Wall clock time and date at job start Tue Mar 31 2020 13:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48496 * 109.47305 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46981 * 299.99947 * 3 2 1 6 6 H 1.48504 * 109.46834 * 59.99838 * 3 2 1 7 7 C 1.40030 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99809 * 190.94028 * 7 2 1 9 9 C 1.41544 * 120.00033 * 10.93514 * 7 2 1 10 10 C 1.41184 * 120.99372 * 208.95487 * 9 7 2 11 11 C 1.37586 * 119.01578 * 180.02562 * 10 9 7 12 12 N 1.32081 * 121.11208 * 359.97438 * 11 10 9 13 13 C 1.32479 * 122.23397 * 0.02562 * 12 11 10 14 14 N 1.39384 * 119.58746 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99466 * 6.32077 * 14 13 12 16 16 O 1.21560 * 120.00321 * 4.93381 * 15 14 13 17 17 C 1.47810 * 119.99924 * 184.93625 * 15 14 13 18 18 C 1.39343 * 119.87923 * 358.16606 * 17 15 14 19 19 C 1.37944 * 119.60252 * 179.97438 * 18 17 15 20 20 C 1.38089 * 119.93458 * 0.13570 * 19 18 17 21 21 C 1.39027 * 120.86192 * 0.05171 * 20 19 18 22 22 C 1.37422 * 119.76325 * 359.37072 * 21 20 19 23 23 C 1.50611 * 122.63125 * 181.01117 * 22 21 20 24 24 C 1.52731 * 110.58772 * 342.22907 * 23 22 21 25 25 C 1.53321 * 108.36740 * 51.13749 * 24 23 22 26 26 C 1.50653 * 117.69841 * 179.29378 * 21 20 19 27 27 C 1.38624 * 120.83252 * 0.24714 * 13 12 11 28 28 H 0.96997 * 120.00221 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.48895 * 0.02798 * 10 9 7 30 30 H 1.07998 * 119.44269 * 180.02562 * 11 10 9 31 31 H 0.96995 * 120.00443 * 186.31511 * 14 13 12 32 32 H 1.08000 * 120.20422 * 359.94457 * 18 17 15 33 33 H 1.07999 * 120.03132 * 180.11727 * 19 18 17 34 34 H 1.07999 * 119.56457 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.25016 * 102.51565 * 23 22 21 36 36 H 1.09006 * 109.25316 * 221.93830 * 23 22 21 37 37 H 1.09002 * 109.68749 * 170.86030 * 24 23 22 38 38 H 1.09003 * 109.68490 * 291.41725 * 24 23 22 39 39 H 1.09003 * 109.67601 * 49.98740 * 25 24 23 40 40 H 1.08998 * 109.67776 * 170.53030 * 25 24 23 41 41 H 1.09000 * 109.24640 * 282.67348 * 26 21 20 42 42 H 1.08997 * 109.24978 * 42.08984 * 26 21 20 43 43 H 1.08005 * 120.60407 * 179.74890 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8825 2.3964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0729 -1.2212 0.1770 9 6 1.3192 -2.4273 -0.2336 10 6 1.7781 -3.6413 0.3221 11 6 1.0778 -4.7981 0.0688 12 7 -0.0096 -4.7874 -0.6810 13 6 -0.4815 -3.6756 -1.2255 14 7 -1.6337 -3.7279 -2.0081 15 6 -2.3318 -4.8767 -2.1035 16 8 -2.0090 -5.8413 -1.4378 17 6 -3.4901 -4.9639 -3.0176 18 6 -3.8814 -3.8456 -3.7509 19 6 -4.9628 -3.9335 -4.6028 20 6 -5.6512 -5.1246 -4.7217 21 6 -5.2704 -6.2445 -3.9911 22 6 -4.1875 -6.1731 -3.1481 23 6 -3.7055 -7.3517 -2.3438 24 6 -4.7916 -8.4218 -2.2551 25 6 -5.2934 -8.7195 -3.6729 26 6 -6.0816 -7.5022 -4.1636 27 6 0.1594 -2.4618 -1.0312 28 1 -0.4850 0.8400 0.0004 29 1 2.6657 -3.6615 0.9370 30 1 1.4225 -5.7306 0.4907 31 1 -1.9331 -2.9375 -2.4839 32 1 -3.3416 -2.9153 -3.6527 33 1 -5.2709 -3.0715 -5.1759 34 1 -6.4968 -5.1869 -5.3908 35 1 -2.8217 -7.7752 -2.8211 36 1 -3.4457 -7.0189 -1.3388 37 1 -4.3784 -9.3288 -1.8138 38 1 -5.6165 -8.0578 -1.6425 39 1 -4.4447 -8.9066 -4.3309 40 1 -5.9448 -9.5933 -3.6558 41 1 -7.0108 -7.4104 -3.6012 42 1 -6.3135 -7.6382 -5.2199 43 1 -0.2263 -1.5584 -1.4801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334663437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:31 Heat of formation + Delta-G solvation = 1.713211 kcal Electronic energy + Delta-G solvation = -26100.352744 eV Core-core repulsion = 22494.934272 eV Total energy + Delta-G solvation = -3605.418473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83875 -40.59288 -39.25187 -37.07576 -36.14687 -35.50559 -33.45274 -32.47591 -31.25197 -30.85784 -29.45217 -27.92315 -25.36697 -24.43858 -23.88315 -23.62320 -22.80312 -21.38271 -20.27527 -19.43632 -18.75762 -17.53064 -17.15747 -16.75256 -16.50544 -16.33078 -16.12628 -15.97941 -15.77544 -15.47476 -14.85979 -14.72716 -14.60220 -14.43611 -14.31942 -13.90942 -13.59946 -13.37587 -13.19682 -12.96828 -12.91525 -12.73223 -12.63570 -12.43008 -12.13964 -11.88483 -11.80776 -11.70384 -11.49381 -11.20514 -11.19423 -10.57213 -9.93334 -9.81806 -9.62583 -9.52352 -8.88051 -8.63504 -6.59472 -0.17790 0.38689 0.79341 0.97027 1.40549 1.53094 1.55570 1.98136 2.06384 2.20034 2.75737 2.88257 3.53497 3.67082 3.70546 3.75627 4.03481 4.06391 4.14671 4.17901 4.25211 4.37700 4.47601 4.64266 4.68190 4.73231 4.78545 4.84713 4.90525 4.94824 4.97401 5.03736 5.06039 5.12470 5.20731 5.23452 5.32311 5.39659 5.44156 5.45155 5.50373 5.60392 5.71833 5.89513 5.98134 6.11446 6.43920 6.54249 6.76546 6.82027 7.23600 7.77402 8.29029 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.003031 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.520885 B = 9235.977981 C =10416.357020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.486 4.486 8 H 0.084 0.916 9 C 0.117 3.883 10 C -0.294 4.294 11 C 0.113 3.887 12 N -0.575 5.575 13 C 0.333 3.667 14 N -0.650 5.650 15 C 0.535 3.465 16 O -0.509 6.509 17 C -0.158 4.158 18 C -0.095 4.095 19 C -0.127 4.127 20 C -0.088 4.088 21 C -0.095 4.095 22 C -0.035 4.035 23 C -0.088 4.088 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.075 4.075 27 C -0.252 4.252 28 H 0.291 0.709 29 H 0.118 0.882 30 H 0.152 0.848 31 H 0.418 0.582 32 H 0.134 0.866 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 -6.275 -11.304 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.186 1.186 6 H -0.192 1.192 7 C -0.517 4.517 8 H 0.103 0.897 9 C 0.108 3.892 10 C -0.317 4.317 11 C -0.041 4.041 12 N -0.295 5.295 13 C 0.107 3.893 14 N -0.297 5.297 15 C 0.324 3.676 16 O -0.383 6.383 17 C -0.162 4.162 18 C -0.114 4.114 19 C -0.144 4.144 20 C -0.106 4.106 21 C -0.095 4.095 22 C -0.036 4.036 23 C -0.124 4.124 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.112 4.112 27 C -0.277 4.277 28 H 0.102 0.898 29 H 0.136 0.864 30 H 0.169 0.831 31 H 0.257 0.743 32 H 0.152 0.848 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.686 -7.648 -11.019 19.890 hybrid contribution 1.204 2.055 0.486 2.430 sum -13.482 -5.594 -10.533 18.000 Atomic orbital electron populations 1.69805 1.08995 1.30805 1.35081 1.26826 0.95650 1.04581 0.90863 0.85034 0.79277 0.75659 0.78987 1.18120 1.18599 1.19188 1.19868 0.96441 0.90921 1.44485 0.89750 1.18016 0.90732 0.93415 0.87010 1.22149 1.05681 0.94402 1.09496 1.22236 0.90183 0.97653 0.94030 1.67309 1.16534 1.28524 1.17132 1.18404 0.87739 0.90491 0.92626 1.43392 1.24009 1.14422 1.47866 1.19082 0.83310 0.82473 0.82709 1.90748 1.67235 1.36057 1.44294 1.19949 0.97896 0.96881 1.01439 1.21492 0.97656 0.96911 0.95313 1.21376 0.94892 0.99521 0.98638 1.21789 0.99550 0.91483 0.97764 1.19960 0.95374 0.97884 0.96275 1.19865 0.94337 0.93499 0.95873 1.20726 0.97935 0.93465 1.00316 1.21629 0.97748 0.97923 0.98353 1.21641 1.00177 0.98303 0.95413 1.20611 0.97427 0.89772 1.03347 1.21515 1.02814 0.95310 1.08086 0.89823 0.86383 0.83111 0.74315 0.84785 0.82172 0.82039 0.92426 0.90703 0.91182 0.91639 0.92334 0.89182 0.89034 0.88420 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.08 10.95 21.84 0.24 -40.84 16 2 C 0.04 1.78 5.28 85.29 0.45 2.23 16 3 Si 0.99 36.41 29.57 68.60 2.03 38.44 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 6 H -0.27 -9.49 7.11 99.48 0.71 -8.79 16 7 C -0.49 -25.48 9.12 23.52 0.21 -25.27 16 8 H 0.08 4.23 7.87 -2.91 -0.02 4.21 16 9 C 0.12 6.34 5.56 -21.11 -0.12 6.22 16 10 C -0.29 -14.85 9.90 22.84 0.23 -14.62 16 11 C 0.11 5.58 11.15 84.50 0.94 6.52 16 12 N -0.58 -30.56 7.89 -193.58 -1.53 -32.09 16 13 C 0.33 17.03 7.40 132.79 0.98 18.01 16 14 N -0.65 -27.62 5.33 -311.30 -1.66 -29.28 16 15 C 0.53 22.39 7.67 86.78 0.67 23.06 16 16 O -0.51 -24.63 11.31 -3.90 -0.04 -24.68 16 17 C -0.16 -5.16 5.88 -20.00 -0.12 -5.28 16 18 C -0.10 -2.40 9.53 22.47 0.21 -2.19 16 19 C -0.13 -2.34 10.03 22.16 0.22 -2.12 16 20 C -0.09 -1.49 9.60 22.42 0.22 -1.28 16 21 C -0.09 -2.03 5.73 -19.88 -0.11 -2.14 16 22 C -0.03 -1.02 5.77 -19.61 -0.11 -1.14 16 23 C -0.09 -2.74 4.28 29.73 0.13 -2.61 16 24 C -0.12 -2.66 5.97 30.61 0.18 -2.47 16 25 C -0.12 -1.96 6.00 30.73 0.18 -1.77 16 26 C -0.07 -1.10 5.67 29.87 0.17 -0.93 16 27 C -0.25 -13.32 8.58 22.99 0.20 -13.12 16 28 H 0.29 13.00 8.29 -92.71 -0.77 12.23 16 29 H 0.12 5.42 8.06 -2.91 -0.02 5.40 16 30 H 0.15 6.39 8.06 -2.91 -0.02 6.37 16 31 H 0.42 14.81 6.71 -92.71 -0.62 14.19 16 32 H 0.13 3.02 6.39 -2.91 -0.02 3.00 16 33 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.16 1.51 8.05 -2.91 -0.02 1.48 16 35 H 0.06 1.97 8.11 -2.39 -0.02 1.95 16 36 H 0.07 2.89 5.72 -2.38 -0.01 2.87 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.40 8.09 -2.39 -0.02 1.39 16 39 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.10 0.99 8.12 -2.39 -0.02 0.97 16 43 H 0.12 6.39 6.38 -2.91 -0.02 6.37 16 Total: -1.00 -70.21 349.96 3.99 -66.21 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: 0.43 Total: 41.14 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 4.53 Total: -18.90 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -2.95 Total: -102.21 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.04 Total: -24.68 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -70.21 3.99 -66.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334663437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.928 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds