Wall clock time and date at job start Tue Mar 31 2020 13:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86801 * 120.00333 * 2 1 4 4 H 1.48497 * 109.47333 * 269.99936 * 3 2 1 5 5 H 1.48499 * 109.46987 * 30.00134 * 3 2 1 6 6 H 1.48504 * 109.47278 * 149.99759 * 3 2 1 7 7 C 1.39894 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00173 * 191.73024 * 7 2 1 9 9 C 1.41156 * 119.99926 * 11.71947 * 7 2 1 10 10 C 1.40865 * 120.16634 * 207.91501 * 9 7 2 11 11 C 1.36375 * 119.82894 * 180.02562 * 10 9 7 12 12 C 1.39477 * 120.16904 * 0.02562 * 11 10 9 13 13 N 1.39247 * 119.83730 * 179.97438 * 12 11 10 14 14 C 1.34783 * 119.99493 * 33.43935 * 13 12 11 15 15 O 1.21573 * 119.99889 * 5.47174 * 14 13 12 16 16 N 1.34774 * 119.99468 * 185.47196 * 14 13 12 17 17 C 1.47509 * 118.76175 * 354.81831 * 16 14 13 18 18 C 1.53573 * 111.02391 * 221.65038 * 17 16 14 19 19 C 1.51537 * 109.58427 * 39.97836 * 18 17 16 20 20 O 1.42153 * 108.75921 * 268.59733 * 19 18 17 21 21 C 1.38013 * 119.43665 * 87.22298 * 20 19 18 22 22 H 1.08993 * 109.46747 * 56.57682 * 21 20 19 23 23 C 1.53006 * 109.46683 * 176.57244 * 21 20 19 24 24 F 1.39899 * 109.47183 * 295.00976 * 23 21 20 25 25 C 1.45128 * 118.75348 * 174.83717 * 16 14 13 26 26 C 1.39479 * 120.33404 * 0.25240 * 12 11 10 27 27 C 1.36374 * 120.16909 * 359.44600 * 26 12 11 28 28 H 0.97000 * 119.99450 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.08695 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.91866 * 179.97438 * 11 10 9 31 31 H 0.96991 * 120.00246 * 213.44684 * 13 12 11 32 32 H 1.09003 * 109.16850 * 101.24965 * 17 16 14 33 33 H 1.08999 * 109.16300 * 342.04798 * 17 16 14 34 34 H 1.09003 * 109.45132 * 160.01433 * 18 17 16 35 35 H 1.09003 * 109.45246 * 279.94353 * 18 17 16 36 36 H 1.09007 * 109.58553 * 28.38058 * 19 18 17 37 37 H 1.09000 * 109.58476 * 148.81390 * 19 18 17 38 38 H 1.09000 * 109.47074 * 55.01172 * 23 21 20 39 39 H 1.08996 * 109.46914 * 175.00634 * 23 21 20 40 40 H 1.09005 * 109.45881 * 210.71009 * 25 16 14 41 41 H 1.08996 * 109.46103 * 330.67046 * 25 16 14 42 42 H 1.08000 * 119.92291 * 179.70267 * 26 12 11 43 43 H 1.07999 * 120.08897 * 180.25354 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4000 5 1 1.4404 2.6526 0.7001 6 1 3.5404 1.4401 0.7001 7 6 2.0082 -1.2115 -0.0005 8 1 3.0713 -1.2214 0.1896 9 6 1.3245 -2.4211 -0.2494 10 6 1.8036 -3.6296 0.2931 11 6 1.1379 -4.7943 0.0479 12 6 -0.0142 -4.7910 -0.7383 13 7 -0.6882 -5.9843 -0.9847 14 6 -0.7157 -6.9493 -0.0441 15 8 -0.2387 -6.7410 1.0546 16 7 -1.2719 -8.1451 -0.3217 17 6 -1.9447 -8.3304 -1.6213 18 6 -3.2536 -9.1168 -1.4569 19 6 -3.9668 -8.6591 -0.2006 20 8 -3.5538 -9.4796 0.8842 21 6 -2.4230 -9.1404 1.5991 22 1 -2.5318 -8.1299 1.9928 23 6 -2.2388 -10.1222 2.7581 24 9 -3.3010 -9.9856 3.6583 25 6 -1.1867 -9.2017 0.6695 26 6 -0.4914 -3.5993 -1.2837 27 6 0.1600 -2.4258 -1.0422 28 1 -0.4849 0.8401 0.0004 29 1 2.6958 -3.6338 0.9017 30 1 1.5042 -5.7217 0.4627 31 1 -1.1377 -6.1211 -1.8332 32 1 -1.2816 -8.8754 -2.2931 33 1 -2.1656 -7.3539 -2.0523 34 1 -3.8934 -8.9416 -2.3219 35 1 -3.0305 -10.1810 -1.3804 36 1 -3.7094 -7.6206 0.0079 37 1 -5.0442 -8.7503 -0.3384 38 1 -2.2189 -11.1411 2.3714 39 1 -1.2999 -9.9091 3.2689 40 1 -1.1573 -10.1689 0.1677 41 1 -0.2806 -9.0722 1.2613 42 1 -1.3815 -3.6051 -1.8954 43 1 -0.2130 -1.5032 -1.4618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334896127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:58 Heat of formation + Delta-G solvation = -87.835964 kcal Electronic energy + Delta-G solvation = -27356.535892 eV Core-core repulsion = 23316.465052 eV Total energy + Delta-G solvation = -4040.070841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.68054 -40.78948 -39.04461 -37.39418 -35.48785 -34.66204 -33.51186 -32.88004 -30.25582 -29.56735 -28.82213 -27.07368 -25.75828 -24.48994 -22.40699 -21.71606 -21.34309 -20.75381 -19.23497 -18.30928 -17.32256 -17.29900 -16.92487 -16.60892 -16.05117 -15.42306 -15.28840 -15.17580 -14.99698 -14.62720 -14.23267 -14.07335 -13.88518 -13.44732 -13.03924 -12.92633 -12.69775 -12.57450 -12.11720 -11.84560 -11.77458 -11.61854 -11.39097 -11.27887 -11.16796 -11.12684 -11.00927 -10.74448 -10.67449 -10.05720 -9.85735 -9.57096 -9.53915 -9.23806 -8.95153 -8.64407 -7.54778 -6.92520 -6.69527 -4.30521 2.61284 2.75894 3.07114 3.09297 3.11795 3.12376 3.30661 3.59069 3.94801 4.11624 4.33724 4.45995 4.56410 4.65661 4.75132 4.76754 4.85351 4.98667 5.01248 5.19666 5.32634 5.34758 5.41631 5.54698 5.64828 5.69172 5.75988 5.83264 6.16540 6.36018 6.45497 6.75443 6.76719 7.02105 7.08870 7.23398 7.30370 7.35411 7.61396 7.82050 7.92823 8.04969 8.28708 8.37111 8.61315 8.88088 8.90323 9.04463 10.22864 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.002717 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.262863 B =10304.042603 C =10710.963300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.211 4.211 11 C -0.079 4.079 12 C 0.013 3.987 13 N -0.664 5.664 14 C 0.691 3.309 15 O -0.571 6.571 16 N -0.634 5.634 17 C 0.108 3.892 18 C -0.165 4.165 19 C 0.076 3.924 20 O -0.384 6.384 21 C 0.054 3.946 22 H 0.069 0.931 23 C 0.078 3.922 24 F -0.212 7.212 25 C 0.106 3.894 26 C -0.118 4.118 27 C -0.147 4.147 28 H 0.279 0.721 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.390 0.610 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 -17.138 -4.212 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.101 3.899 10 C -0.231 4.231 11 C -0.099 4.099 12 C -0.080 4.080 13 N -0.312 5.312 14 C 0.393 3.607 15 O -0.448 6.448 16 N -0.372 5.372 17 C -0.015 4.015 18 C -0.203 4.203 19 C 0.000 4.000 20 O -0.303 6.303 21 C -0.007 4.007 22 H 0.086 0.914 23 C 0.022 3.978 24 F -0.193 7.193 25 C -0.019 4.019 26 C -0.139 4.139 27 C -0.167 4.167 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.226 0.774 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.453 -16.984 -3.346 18.474 hybrid contribution 0.086 1.007 -0.548 1.149 sum -6.368 -15.977 -3.894 17.635 Atomic orbital electron populations 1.69818 1.07424 1.28986 1.36454 1.25902 0.94832 1.01246 0.92476 0.86259 0.80377 0.80563 0.79175 1.19385 1.20348 1.18672 1.19549 0.96205 0.90626 1.42486 0.90473 1.17669 0.91671 0.92180 0.88426 1.20688 1.03051 0.93028 1.06327 1.20255 0.93464 0.97723 0.98467 1.17007 0.96507 0.83341 1.11105 1.42378 1.56219 1.15700 1.16916 1.16054 0.79790 0.80331 0.84527 1.90922 1.52258 1.79726 1.21878 1.47063 1.60195 1.12027 1.17933 1.21874 0.93847 1.00965 0.84843 1.22486 0.96550 1.01623 0.99638 1.22175 0.98554 0.94484 0.84787 1.86227 1.44117 1.53740 1.46180 1.22716 0.86686 0.99447 0.91807 0.91357 1.21932 0.88138 1.00337 0.87344 1.92781 1.59751 1.97299 1.69426 1.21957 0.99096 0.90171 0.90637 1.20195 0.99103 0.91853 1.02702 1.20943 0.98668 0.96017 1.01034 0.90986 0.88696 0.87989 0.77403 0.91372 0.90371 0.89382 0.90042 0.92583 0.88971 0.89999 0.88877 0.89954 0.88659 0.89312 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.77 10.83 55.54 0.60 -20.16 16 2 C 0.07 1.81 5.24 -17.34 -0.09 1.72 16 3 Si 0.91 18.76 29.58 -169.99 -5.03 13.73 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.21 9.05 -37.86 -0.34 -12.55 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 9 C 0.10 2.77 5.56 -106.80 -0.59 2.17 16 10 C -0.21 -5.37 9.74 -39.26 -0.38 -5.75 16 11 C -0.08 -1.90 8.57 -39.79 -0.34 -2.24 16 12 C 0.01 0.29 6.29 -83.57 -0.53 -0.24 16 13 N -0.66 -11.76 5.17 -14.10 -0.07 -11.83 16 14 C 0.69 12.21 7.94 -86.92 -0.69 11.52 16 15 O -0.57 -12.44 13.49 5.30 0.07 -12.37 16 16 N -0.63 -8.10 2.19 -178.19 -0.39 -8.49 16 17 C 0.11 0.98 6.00 -3.19 -0.02 0.96 16 18 C -0.16 -1.23 5.78 -27.17 -0.16 -1.39 16 19 C 0.08 0.75 6.37 36.42 0.23 0.98 16 20 O -0.38 -4.51 9.45 -26.53 -0.25 -4.76 16 21 C 0.05 0.64 2.99 -25.78 -0.08 0.57 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 23 C 0.08 0.77 7.20 37.16 0.27 1.04 16 24 F -0.21 -2.77 17.34 2.25 0.04 -2.73 16 25 C 0.11 1.19 4.82 -3.83 -0.02 1.17 16 26 C -0.12 -2.69 9.89 -39.79 -0.39 -3.08 16 27 C -0.15 -3.76 8.61 -39.26 -0.34 -4.10 16 28 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 29 H 0.09 2.30 8.06 -52.48 -0.42 1.88 16 30 H 0.10 2.43 6.40 -52.49 -0.34 2.09 16 31 H 0.39 5.46 6.25 -40.82 -0.26 5.20 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.68 5.78 -51.93 -0.30 0.38 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.59 8.01 -51.93 -0.42 0.18 16 36 H 0.06 0.66 7.40 -51.93 -0.38 0.28 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 41 H 0.10 1.16 7.35 -51.93 -0.38 0.78 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.12 3.25 6.18 -52.49 -0.32 2.92 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -31.99 350.06 -8.97 -40.96 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.75 Total: 9.60 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -3.47 Total: -9.22 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.14 Total: -40.48 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.18 Total: -17.13 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.99 -8.97 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334896127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.876 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds