Wall clock time and date at job start Tue Mar 31 2020 13:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86801 * 120.00333 * 2 1 4 4 H 1.48497 * 109.47333 * 269.99936 * 3 2 1 5 5 H 1.48499 * 109.46987 * 30.00134 * 3 2 1 6 6 H 1.48504 * 109.47278 * 149.99759 * 3 2 1 7 7 C 1.39894 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00173 * 191.73024 * 7 2 1 9 9 C 1.41156 * 119.99926 * 11.71947 * 7 2 1 10 10 C 1.40865 * 120.16634 * 207.91501 * 9 7 2 11 11 C 1.36375 * 119.82894 * 180.02562 * 10 9 7 12 12 C 1.39477 * 120.16904 * 0.02562 * 11 10 9 13 13 N 1.39247 * 119.83730 * 179.97438 * 12 11 10 14 14 C 1.34783 * 119.99493 * 33.43935 * 13 12 11 15 15 O 1.21573 * 119.99889 * 5.47174 * 14 13 12 16 16 N 1.34774 * 119.99468 * 185.47196 * 14 13 12 17 17 C 1.47509 * 118.76175 * 354.81831 * 16 14 13 18 18 C 1.53573 * 111.02391 * 221.65038 * 17 16 14 19 19 C 1.51537 * 109.58427 * 39.97836 * 18 17 16 20 20 O 1.42153 * 108.75921 * 268.59733 * 19 18 17 21 21 C 1.38013 * 119.43665 * 87.22298 * 20 19 18 22 22 H 1.08993 * 109.46747 * 56.57682 * 21 20 19 23 23 C 1.53006 * 109.46683 * 176.57244 * 21 20 19 24 24 F 1.39899 * 109.47183 * 295.00976 * 23 21 20 25 25 C 1.45128 * 118.75348 * 174.83717 * 16 14 13 26 26 C 1.39479 * 120.33404 * 0.25240 * 12 11 10 27 27 C 1.36374 * 120.16909 * 359.44600 * 26 12 11 28 28 H 0.97000 * 119.99450 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.08695 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.91866 * 179.97438 * 11 10 9 31 31 H 0.96991 * 120.00246 * 213.44684 * 13 12 11 32 32 H 1.09003 * 109.16850 * 101.24965 * 17 16 14 33 33 H 1.08999 * 109.16300 * 342.04798 * 17 16 14 34 34 H 1.09003 * 109.45132 * 160.01433 * 18 17 16 35 35 H 1.09003 * 109.45246 * 279.94353 * 18 17 16 36 36 H 1.09007 * 109.58553 * 28.38058 * 19 18 17 37 37 H 1.09000 * 109.58476 * 148.81390 * 19 18 17 38 38 H 1.09000 * 109.47074 * 55.01172 * 23 21 20 39 39 H 1.08996 * 109.46914 * 175.00634 * 23 21 20 40 40 H 1.09005 * 109.45881 * 210.71009 * 25 16 14 41 41 H 1.08996 * 109.46103 * 330.67046 * 25 16 14 42 42 H 1.08000 * 119.92291 * 179.70267 * 26 12 11 43 43 H 1.07999 * 120.08897 * 180.25354 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4000 5 1 1.4404 2.6526 0.7001 6 1 3.5404 1.4401 0.7001 7 6 2.0082 -1.2115 -0.0005 8 1 3.0713 -1.2214 0.1896 9 6 1.3245 -2.4211 -0.2494 10 6 1.8036 -3.6296 0.2931 11 6 1.1379 -4.7943 0.0479 12 6 -0.0142 -4.7910 -0.7383 13 7 -0.6882 -5.9843 -0.9847 14 6 -0.7157 -6.9493 -0.0441 15 8 -0.2387 -6.7410 1.0546 16 7 -1.2719 -8.1451 -0.3217 17 6 -1.9447 -8.3304 -1.6213 18 6 -3.2536 -9.1168 -1.4569 19 6 -3.9668 -8.6591 -0.2006 20 8 -3.5538 -9.4796 0.8842 21 6 -2.4230 -9.1404 1.5991 22 1 -2.5318 -8.1299 1.9928 23 6 -2.2388 -10.1222 2.7581 24 9 -3.3010 -9.9856 3.6583 25 6 -1.1867 -9.2017 0.6695 26 6 -0.4914 -3.5993 -1.2837 27 6 0.1600 -2.4258 -1.0422 28 1 -0.4849 0.8401 0.0004 29 1 2.6958 -3.6338 0.9017 30 1 1.5042 -5.7217 0.4627 31 1 -1.1377 -6.1211 -1.8332 32 1 -1.2816 -8.8754 -2.2931 33 1 -2.1656 -7.3539 -2.0523 34 1 -3.8934 -8.9416 -2.3219 35 1 -3.0305 -10.1810 -1.3804 36 1 -3.7094 -7.6206 0.0079 37 1 -5.0442 -8.7503 -0.3384 38 1 -2.2189 -11.1411 2.3714 39 1 -1.2999 -9.9091 3.2689 40 1 -1.1573 -10.1689 0.1677 41 1 -0.2806 -9.0722 1.2613 42 1 -1.3815 -3.6051 -1.8954 43 1 -0.2130 -1.5032 -1.4618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334896127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:58 Heat of formation + Delta-G solvation = -106.696112 kcal Electronic energy + Delta-G solvation = -27357.353730 eV Core-core repulsion = 23316.465052 eV Total energy + Delta-G solvation = -4040.888678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.61335 -41.99791 -40.27583 -39.07260 -36.59769 -36.30788 -34.77764 -34.28660 -31.55342 -31.27287 -30.46660 -28.03424 -27.03509 -25.93896 -23.66034 -23.06562 -22.48588 -22.42055 -20.58768 -19.58187 -19.20798 -18.40491 -17.93697 -17.55867 -17.39794 -16.98361 -16.40721 -16.28381 -15.99099 -15.93050 -15.72172 -15.31487 -15.02275 -14.66969 -14.46640 -14.44954 -14.00882 -13.73816 -13.65173 -13.49490 -13.19333 -12.84030 -12.78908 -12.66240 -12.49445 -12.33280 -12.12025 -12.00216 -11.74491 -11.56833 -11.41483 -11.25307 -11.02871 -10.72860 -10.69719 -9.72667 -9.47262 -8.78112 -8.56203 -6.28564 0.83622 1.13522 1.39607 1.47060 1.52959 1.60336 2.10323 2.23144 2.48995 2.77738 2.91311 3.47605 3.70012 3.72379 3.79293 3.91825 4.02350 4.12852 4.19719 4.22613 4.36896 4.41811 4.45551 4.50646 4.61551 4.66995 4.79291 4.90222 4.92695 5.04476 5.07776 5.12907 5.14414 5.28165 5.42567 5.53466 5.62054 5.73125 6.01421 6.05530 6.13735 6.37847 6.46726 6.66274 6.93679 6.95227 7.00131 7.56532 8.37333 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.002717 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.262863 B =10304.042603 C =10710.963300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.032 3.968 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.073 0.927 9 C 0.072 3.928 10 C -0.228 4.228 11 C -0.090 4.090 12 C 0.031 3.969 13 N -0.658 5.658 14 C 0.687 3.313 15 O -0.619 6.619 16 N -0.622 5.622 17 C 0.098 3.902 18 C -0.152 4.152 19 C 0.067 3.933 20 O -0.391 6.391 21 C 0.060 3.940 22 H 0.024 0.976 23 C 0.074 3.926 24 F -0.231 7.231 25 C 0.106 3.894 26 C -0.116 4.116 27 C -0.164 4.164 28 H 0.287 0.713 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.411 0.589 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.029 0.971 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.123 0.877 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 -18.823 -5.984 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.526 4.526 8 H 0.092 0.908 9 C 0.070 3.930 10 C -0.248 4.248 11 C -0.110 4.110 12 C -0.063 4.063 13 N -0.308 5.308 14 C 0.390 3.610 15 O -0.499 6.499 16 N -0.359 5.359 17 C -0.023 4.023 18 C -0.190 4.190 19 C -0.009 4.009 20 O -0.310 6.310 21 C -0.001 4.001 22 H 0.042 0.958 23 C 0.019 3.981 24 F -0.212 7.212 25 C -0.019 4.019 26 C -0.137 4.137 27 C -0.184 4.184 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.250 0.750 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.047 0.953 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.101 0.899 42 H 0.141 0.859 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.465 -18.739 -5.168 20.823 hybrid contribution 0.264 1.335 -0.012 1.360 sum -7.201 -17.405 -5.181 19.535 Atomic orbital electron populations 1.69869 1.08793 1.30351 1.36876 1.26744 0.95648 1.04407 0.91391 0.85138 0.78791 0.75768 0.79582 1.18322 1.19391 1.18561 1.19775 0.96337 0.91828 1.44697 0.90843 1.17982 0.92779 0.92788 0.89490 1.20813 1.03546 0.93517 1.06900 1.20355 0.94320 0.97184 0.99151 1.17039 0.95526 0.84929 1.08837 1.42164 1.56074 1.14396 1.18139 1.16263 0.79639 0.81425 0.83720 1.90894 1.54299 1.80863 1.23813 1.47133 1.58962 1.10319 1.19510 1.22247 0.94999 1.02067 0.83036 1.22426 0.95593 1.01701 0.99232 1.22397 1.00066 0.92929 0.85460 1.86228 1.44073 1.53915 1.46825 1.22585 0.87180 0.97746 0.92559 0.95816 1.22181 0.87893 1.01536 0.86488 1.92737 1.60867 1.97456 1.70179 1.22113 0.98135 0.91067 0.90553 1.20447 0.99681 0.90977 1.02571 1.20949 0.99027 0.96736 1.01647 0.90219 0.88803 0.88031 0.74953 0.88837 0.89964 0.86350 0.88913 0.95258 0.87235 0.86747 0.87554 0.86194 0.89902 0.85926 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.04 10.83 21.82 0.24 -43.80 16 2 C 0.03 1.62 5.24 85.24 0.45 2.06 16 3 Si 0.99 38.83 29.58 68.60 2.03 40.86 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.50 -27.46 9.05 23.39 0.21 -27.25 16 8 H 0.07 3.94 7.87 -2.91 -0.02 3.91 16 9 C 0.07 4.02 5.56 -21.27 -0.12 3.90 16 10 C -0.23 -12.09 9.74 22.48 0.22 -11.87 16 11 C -0.09 -4.43 8.57 22.13 0.19 -4.24 16 12 C 0.03 1.36 6.29 38.56 0.24 1.61 16 13 N -0.66 -22.42 5.17 -316.79 -1.64 -24.06 16 14 C 0.69 23.86 7.94 179.05 1.42 25.28 16 15 O -0.62 -27.47 13.49 -3.95 -0.05 -27.52 16 16 N -0.62 -14.72 2.19 -835.95 -1.83 -16.55 16 17 C 0.10 1.41 6.00 86.38 0.52 1.93 16 18 C -0.15 -1.63 5.78 30.31 0.18 -1.46 16 19 C 0.07 1.17 6.37 71.50 0.46 1.63 16 20 O -0.39 -8.50 9.45 -117.84 -1.11 -9.61 16 21 C 0.06 1.39 2.99 31.21 0.09 1.48 16 22 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 23 C 0.07 1.37 7.20 71.98 0.52 1.89 16 24 F -0.23 -5.96 17.34 44.97 0.78 -5.18 16 25 C 0.11 2.17 4.82 87.25 0.42 2.60 16 26 C -0.12 -5.26 9.89 22.13 0.22 -5.04 16 27 C -0.16 -8.58 8.61 22.48 0.19 -8.39 16 28 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 29 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 30 H 0.10 4.98 6.40 -2.91 -0.02 4.96 16 31 H 0.41 10.45 6.25 -92.72 -0.58 9.87 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.13 5.78 -2.39 -0.01 1.11 16 34 H 0.12 0.65 8.14 -2.39 -0.02 0.64 16 35 H 0.09 0.88 8.01 -2.39 -0.02 0.86 16 36 H 0.03 0.67 7.40 -2.38 -0.02 0.65 16 37 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.12 1.61 8.11 -2.38 -0.02 1.59 16 41 H 0.08 1.95 7.35 -2.39 -0.02 1.94 16 42 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 43 H 0.11 6.09 6.18 -2.91 -0.02 6.08 16 Total: -1.00 -73.50 350.06 4.08 -69.42 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.46 Total: 32.31 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 5.21 Total: -15.86 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -3.23 Total: -84.41 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.17 Total: -37.13 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.78 Total: -5.18 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -73.50 4.08 -69.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334896127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.272 kcal (2) G-P(sol) polarization free energy of solvation -73.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds