Wall clock time and date at job start Tue Mar 31 2020 13:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86797 * 119.99692 * 2 1 4 4 H 1.48501 * 109.47317 * 274.99385 * 3 2 1 5 5 H 1.48500 * 109.47570 * 34.99598 * 3 2 1 6 6 H 1.48501 * 109.47218 * 154.99343 * 3 2 1 7 7 C 1.40233 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99967 * 210.64719 * 7 2 1 9 9 C 1.41089 * 120.00098 * 30.65027 * 7 2 1 10 10 C 1.40893 * 120.10327 * 195.28331 * 9 7 2 11 11 C 1.36303 * 119.89464 * 180.02562 * 10 9 7 12 12 C 1.40036 * 120.10541 * 359.97438 * 11 10 9 13 13 C 1.47581 * 119.89827 * 180.02562 * 12 11 10 14 14 O 1.21592 * 119.99878 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00055 * 179.97438 * 13 12 11 16 16 C 1.39290 * 120.00274 * 184.87583 * 15 13 12 17 17 C 1.38939 * 119.79518 * 174.68498 * 16 15 13 18 18 C 1.38756 * 119.28174 * 180.02562 * 17 16 15 19 19 C 1.38094 * 118.56875 * 359.80520 * 18 17 16 20 20 C 1.38630 * 119.04469 * 0.28581 * 19 18 17 21 21 N 1.31730 * 121.13938 * 359.81891 * 20 19 18 22 22 C 1.50487 * 122.47333 * 180.34360 * 19 18 17 23 23 C 1.52788 * 110.47530 * 342.26745 * 22 19 18 24 24 C 1.53319 * 108.53139 * 51.10671 * 23 22 19 25 25 C 1.50350 * 118.64091 * 179.50865 * 18 17 16 26 26 C 1.40040 * 120.20494 * 0.26940 * 12 11 10 27 27 C 1.36303 * 120.10242 * 359.45281 * 26 12 11 28 28 H 0.97000 * 120.00315 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.05201 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.94662 * 179.97438 * 11 10 9 31 31 H 0.97002 * 120.00141 * 4.88579 * 15 13 12 32 32 H 1.07999 * 120.35922 * 0.04296 * 17 16 15 33 33 H 1.08002 * 119.42934 * 179.80709 * 20 19 18 34 34 H 1.08996 * 109.30861 * 102.58063 * 22 19 18 35 35 H 1.09006 * 109.29980 * 221.96736 * 22 19 18 36 36 H 1.08999 * 109.62687 * 170.82194 * 23 22 19 37 37 H 1.09001 * 109.63010 * 291.39201 * 23 22 19 38 38 H 1.09001 * 109.63593 * 170.41676 * 24 23 22 39 39 H 1.09000 * 109.64504 * 49.79891 * 24 23 22 40 40 H 1.08997 * 109.31381 * 282.99381 * 25 18 17 41 41 H 1.09003 * 109.30922 * 42.39877 * 25 18 17 42 42 H 1.07996 * 119.94951 * 179.72694 * 26 12 11 43 43 H 1.08003 * 120.05080 * 180.24558 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3823 2.1074 -1.3947 5 1 1.4946 2.6199 0.8029 6 1 3.5867 1.4121 0.5918 7 6 2.0076 -1.2145 0.0005 8 1 2.9745 -1.2795 0.4773 9 6 1.4500 -2.3513 -0.6218 10 6 1.9761 -3.6312 -0.3571 11 6 1.4344 -4.7265 -0.9612 12 6 0.3565 -4.5812 -1.8432 13 6 -0.2267 -5.7703 -2.4942 14 8 0.2290 -6.8740 -2.2648 15 7 -1.2645 -5.6329 -3.3431 16 6 -1.8804 -6.7615 -3.8787 17 6 -3.0175 -6.6202 -4.6645 18 6 -3.6228 -7.7518 -5.1923 19 6 -3.0671 -8.9861 -4.9191 20 6 -1.9323 -9.0526 -4.1256 21 7 -1.3790 -7.9623 -3.6354 22 6 -3.6463 -10.2687 -5.4521 23 6 -5.0869 -10.0536 -5.9133 24 6 -5.1218 -8.8436 -6.8542 25 6 -4.8589 -7.5830 -6.0312 26 6 -0.1664 -3.3105 -2.1133 27 6 0.3651 -2.2100 -1.5096 28 1 -0.4850 0.8400 -0.0004 29 1 2.8076 -3.7442 0.3227 30 1 1.8373 -5.7080 -0.7592 31 1 -1.5825 -4.7479 -3.5812 32 1 -3.4257 -5.6401 -4.8626 33 1 -1.4944 -10.0150 -3.9055 34 1 -3.0460 -10.6128 -6.2942 35 1 -3.6284 -11.0255 -4.6677 36 1 -5.4381 -10.9393 -6.4426 37 1 -5.7236 -9.8638 -5.0491 38 1 -6.1017 -8.7750 -7.3266 39 1 -4.3507 -8.9504 -7.6172 40 1 -5.7127 -7.3926 -5.3810 41 1 -4.7254 -6.7352 -6.7033 42 1 -0.9949 -3.2027 -2.7976 43 1 -0.0415 -1.2309 -1.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334988806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:03 Heat of formation + Delta-G solvation = -8.141604 kcal Electronic energy + Delta-G solvation = -25282.852496 eV Core-core repulsion = 21677.006686 eV Total energy + Delta-G solvation = -3605.845809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95315 -40.57296 -39.00964 -37.68617 -35.79549 -35.61334 -33.53609 -32.28084 -31.59949 -31.32863 -29.64512 -27.71279 -25.21810 -24.73099 -23.68956 -23.26820 -22.79195 -21.44335 -20.39368 -19.43265 -19.01453 -18.10100 -17.24611 -16.86795 -16.46803 -16.24101 -16.01709 -15.78135 -15.53877 -15.36590 -15.09731 -14.69247 -14.59278 -14.51622 -14.02617 -13.95234 -13.78397 -13.48049 -13.21636 -13.16676 -13.02973 -12.91645 -12.66899 -12.38620 -11.85494 -11.78541 -11.74339 -11.43910 -11.42042 -11.38645 -11.03820 -10.95589 -10.33159 -9.90549 -9.66474 -9.56750 -9.05302 -8.94695 -6.49153 0.04781 0.35542 0.56220 1.14283 1.35724 1.43036 1.53320 2.03124 2.07566 2.13904 2.63990 2.96170 3.48997 3.66856 3.70351 3.82883 3.97759 4.00734 4.09097 4.26431 4.26957 4.41226 4.41664 4.49272 4.64434 4.67343 4.72603 4.85044 4.88818 4.97283 4.99457 5.07134 5.09187 5.12822 5.20523 5.26765 5.31213 5.41841 5.50095 5.52683 5.58260 5.77630 5.86178 5.95090 5.97335 6.16209 6.36621 6.47588 6.70704 6.85773 7.14743 7.48212 8.00015 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.002304 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.921332 B =12148.696587 C =12979.498807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.045 3.955 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.256 1.256 7 C -0.461 4.461 8 H 0.089 0.911 9 C 0.098 3.902 10 C -0.261 4.261 11 C -0.025 4.025 12 C -0.309 4.309 13 C 0.561 3.439 14 O -0.547 6.547 15 N -0.657 5.657 16 C 0.333 3.667 17 C -0.211 4.211 18 C -0.012 4.012 19 C -0.163 4.163 20 C 0.112 3.888 21 N -0.525 5.525 22 C -0.070 4.070 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.081 4.081 26 C -0.048 4.048 27 C -0.213 4.213 28 H 0.303 0.697 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.425 0.575 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 -8.553 -13.391 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.487 4.487 8 H 0.107 0.893 9 C 0.094 3.906 10 C -0.280 4.280 11 C -0.045 4.045 12 C -0.314 4.314 13 C 0.355 3.645 14 O -0.425 6.425 15 N -0.304 5.304 16 C 0.104 3.896 17 C -0.234 4.234 18 C -0.020 4.020 19 C -0.167 4.167 20 C -0.047 4.047 21 N -0.240 5.240 22 C -0.107 4.107 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.118 4.118 26 C -0.067 4.067 27 C -0.233 4.233 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.265 0.735 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.141 0.859 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.224 -9.163 -12.601 19.803 hybrid contribution -0.030 1.157 0.024 1.157 sum -12.254 -8.006 -12.577 19.299 Atomic orbital electron populations 1.69805 1.09657 1.32465 1.27370 1.27035 0.95291 1.05154 0.90349 0.85135 0.79482 0.75012 0.79951 1.18201 1.18499 1.17952 1.20191 1.04417 0.94267 1.29775 0.89335 1.18096 0.90583 0.92361 0.89532 1.20732 1.06532 0.92495 1.08268 1.20453 0.93468 0.97312 0.93222 1.18981 1.07242 0.92108 1.13035 1.18708 0.78770 0.89075 0.77909 1.90711 1.60806 1.28233 1.62715 1.43485 1.33159 1.08211 1.45546 1.18814 0.91059 0.86721 0.92996 1.21707 0.96729 1.01828 1.03158 1.20025 0.96294 0.91032 0.94606 1.20755 0.97602 0.96953 1.01375 1.23049 0.92711 0.96173 0.92807 1.67557 1.33373 0.98516 1.24540 1.20383 0.96903 0.92282 1.01142 1.21577 0.95174 0.99182 0.99634 1.21585 1.02959 0.93343 0.97586 1.20574 0.93200 1.00322 0.97668 1.20681 0.97423 0.91419 0.97188 1.20978 1.01950 0.98097 1.02226 0.88528 0.87817 0.88322 0.73534 0.82388 0.81848 0.89790 0.89964 0.89486 0.91894 0.89298 0.91703 0.88982 0.89039 0.85862 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.49 11.19 21.87 0.24 -35.24 16 2 C 0.05 2.02 4.92 85.35 0.42 2.44 16 3 Si 0.99 33.37 29.65 68.60 2.03 35.41 16 4 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 5 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16 6 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 7 C -0.46 -22.95 8.99 23.45 0.21 -22.74 16 8 H 0.09 4.25 8.01 -2.91 -0.02 4.23 16 9 C 0.10 5.08 5.64 -21.28 -0.12 4.96 16 10 C -0.26 -13.22 9.73 22.47 0.22 -13.01 16 11 C -0.03 -1.27 9.52 22.25 0.21 -1.06 16 12 C -0.31 -14.76 5.89 -19.94 -0.12 -14.88 16 13 C 0.56 25.95 7.72 86.71 0.67 26.62 16 14 O -0.55 -28.80 14.59 -4.01 -0.06 -28.86 16 15 N -0.66 -24.38 5.33 -311.38 -1.66 -26.04 16 16 C 0.33 11.76 7.42 132.92 0.99 12.75 16 17 C -0.21 -5.43 9.57 22.56 0.22 -5.21 16 18 C -0.01 -0.25 5.74 -19.88 -0.11 -0.36 16 19 C -0.16 -3.70 5.74 -19.87 -0.11 -3.81 16 20 C 0.11 3.32 10.79 84.80 0.91 4.24 16 21 N -0.53 -20.52 7.89 -192.88 -1.52 -22.04 16 22 C -0.07 -1.02 5.71 29.71 0.17 -0.85 16 23 C -0.12 -1.28 5.97 30.63 0.18 -1.10 16 24 C -0.12 -1.21 5.98 30.64 0.18 -1.03 16 25 C -0.08 -1.09 5.71 29.68 0.17 -0.92 16 26 C -0.05 -2.15 9.47 22.26 0.21 -1.94 16 27 C -0.21 -10.52 8.76 22.47 0.20 -10.32 16 28 H 0.30 12.13 8.29 -92.71 -0.77 11.36 16 29 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 30 H 0.10 4.87 7.63 -2.91 -0.02 4.85 16 31 H 0.42 12.79 6.72 -92.71 -0.62 12.16 16 32 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 33 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.08 8.13 -2.38 -0.02 1.06 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.12 4.40 6.38 -2.91 -0.02 4.39 16 43 H 0.12 5.67 5.98 -2.91 -0.02 5.65 16 Total: -1.00 -68.67 355.44 3.96 -64.71 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: 0.42 Total: 38.29 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 4.49 Total: -26.23 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -2.94 Total: -83.32 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.06 Total: -28.86 kcal Atomic # 14 Polarization: 33.37 SS G_CDS: 2.03 Total: 35.41 kcal Total: -68.67 3.96 -64.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334988806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.573 kcal (2) G-P(sol) polarization free energy of solvation -68.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds