Wall clock time and date at job start Tue Mar 31 2020 13:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86803 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47266 * 272.40417 * 3 2 1 5 5 H 1.48506 * 109.47111 * 32.40718 * 3 2 1 6 6 H 1.48509 * 109.46977 * 152.40167 * 3 2 1 7 7 C 1.40031 * 120.00473 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99724 * 347.82497 * 7 2 1 9 9 C 1.41542 * 120.00484 * 167.83153 * 7 2 1 10 10 C 1.41178 * 120.99882 * 149.34167 * 9 7 2 11 11 C 1.37588 * 119.01973 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.11276 * 359.74195 * 11 10 9 13 13 C 1.32488 * 122.22858 * 0.52727 * 12 11 10 14 14 N 1.39380 * 119.58161 * 179.74587 * 13 12 11 15 15 C 1.34769 * 120.00143 * 4.91962 * 14 13 12 16 16 O 1.21555 * 119.99974 * 355.04665 * 15 14 13 17 17 C 1.47806 * 119.99997 * 175.04695 * 15 14 13 18 18 C 1.39616 * 120.27354 * 359.97438 * 17 15 14 19 19 C 1.37622 * 119.61920 * 180.10376 * 18 17 15 20 20 C 1.39077 * 120.75708 * 0.02562 * 19 18 17 21 21 C 1.37835 * 119.90928 * 359.73648 * 20 19 18 22 22 C 1.38653 * 119.82175 * 0.39655 * 21 20 19 23 23 C 1.50652 * 122.55126 * 180.76070 * 21 20 19 24 24 C 1.52724 * 110.60420 * 341.99104 * 23 21 20 25 25 C 1.53321 * 108.38494 * 51.15841 * 24 23 21 26 26 C 1.50683 * 117.61259 * 179.41469 * 20 19 18 27 27 C 1.38625 * 120.83412 * 359.47585 * 13 12 11 28 28 H 0.96996 * 120.00301 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.48990 * 0.04153 * 10 9 7 30 30 H 1.07996 * 119.44205 * 179.97438 * 11 10 9 31 31 H 0.97003 * 119.99379 * 184.91293 * 14 13 12 32 32 H 1.08005 * 120.19294 * 0.13461 * 18 17 15 33 33 H 1.08003 * 119.62560 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.78065 * 179.70957 * 22 21 20 35 35 H 1.08994 * 109.25325 * 102.28262 * 23 21 20 36 36 H 1.09003 * 109.24869 * 221.70332 * 23 21 20 37 37 H 1.09001 * 109.67770 * 170.88185 * 24 23 21 38 38 H 1.08996 * 109.68325 * 291.43054 * 24 23 21 39 39 H 1.08998 * 109.67897 * 49.84095 * 25 24 23 40 40 H 1.09000 * 109.67795 * 170.39082 * 25 24 23 41 41 H 1.09005 * 109.25198 * 282.54126 * 26 20 19 42 42 H 1.09004 * 109.25335 * 41.95782 * 26 20 19 43 43 H 1.07997 * 120.60622 * 180.27410 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4379 2.0759 -1.3988 5 1 1.4651 2.6375 0.7504 6 1 3.5634 1.4261 0.6487 7 6 2.0076 -1.2126 -0.0005 8 1 1.4858 -2.1376 0.1963 9 6 3.3992 -1.2263 -0.2589 10 6 4.2368 -2.2037 0.3209 11 6 5.5839 -2.1786 0.0423 12 7 6.0984 -1.2624 -0.7580 13 6 5.3570 -0.3208 -1.3228 14 7 5.9585 0.6223 -2.1543 15 6 7.2669 0.5151 -2.4589 16 8 7.9432 -0.3504 -1.9382 17 6 7.8795 1.4498 -3.4263 18 6 7.1079 2.4456 -4.0281 19 6 7.6917 3.3073 -4.9285 20 6 9.0412 3.1972 -5.2461 21 6 9.8096 2.2193 -4.6517 22 6 9.2312 1.3439 -3.7453 23 6 11.2795 2.0571 -4.9391 24 6 11.6562 2.7735 -6.2342 25 6 11.1279 4.2111 -6.1629 26 6 9.6038 4.1691 -6.2508 27 6 3.9896 -0.2650 -1.1016 28 1 -0.4850 0.8400 0.0004 29 1 3.8261 -2.9602 0.9732 30 1 6.2310 -2.9228 0.4825 31 1 5.4353 1.3558 -2.5137 32 1 6.0591 2.5395 -3.7881 33 1 7.0950 4.0779 -5.3939 34 1 9.8329 0.5750 -3.2835 35 1 11.8554 2.4779 -4.1150 36 1 11.5121 0.9964 -5.0345 37 1 12.7405 2.7860 -6.3448 38 1 11.2061 2.2586 -7.0829 39 1 11.4287 4.6663 -5.2193 40 1 11.5278 4.7908 -6.9948 41 1 9.3101 3.8594 -7.2539 42 1 9.2048 5.1636 -6.0512 43 1 3.3881 0.5014 -1.5674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335277200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:35 Heat of formation + Delta-G solvation = -5.560099 kcal Electronic energy + Delta-G solvation = -25659.764780 eV Core-core repulsion = 22054.030913 eV Total energy + Delta-G solvation = -3605.733867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78461 -40.80591 -39.61083 -36.83954 -36.23978 -35.62921 -33.54841 -33.26613 -31.87749 -30.34866 -29.82257 -27.96386 -25.60603 -24.30059 -24.14267 -23.43048 -22.84707 -21.72324 -20.31861 -19.59948 -19.01848 -17.84425 -17.40132 -16.82754 -16.49032 -16.38810 -16.29945 -16.02761 -15.82357 -15.41173 -14.99109 -14.81700 -14.74425 -14.67686 -14.57521 -14.34787 -13.83467 -13.50366 -13.45280 -13.10601 -12.79621 -12.69809 -12.64814 -12.47268 -12.36586 -11.87291 -11.73122 -11.62976 -11.48190 -11.33361 -11.28395 -11.05122 -10.18501 -9.83265 -9.74842 -9.62701 -9.05676 -8.97656 -6.76113 -0.25818 0.32899 0.56277 0.72525 1.20444 1.36541 1.45227 1.84547 1.90101 2.07164 2.62167 2.80883 3.40503 3.47753 3.63538 3.76343 3.91536 4.00705 4.06637 4.14319 4.20543 4.21998 4.42218 4.50965 4.55148 4.58921 4.63095 4.66435 4.70704 4.87468 4.89194 4.98582 5.03324 5.08801 5.10129 5.16164 5.23972 5.26374 5.31592 5.43025 5.44994 5.48555 5.60840 5.66038 5.92148 5.98373 6.16246 6.34888 6.48081 6.65694 7.07897 7.60594 8.08803 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.002923 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.350522 B = 9578.164158 C =10694.322556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.052 3.948 3 Si 0.965 3.035 4 H -0.242 1.242 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.466 4.466 8 H 0.068 0.932 9 C 0.113 3.887 10 C -0.279 4.279 11 C 0.128 3.872 12 N -0.574 5.574 13 C 0.364 3.636 14 N -0.652 5.652 15 C 0.543 3.457 16 O -0.517 6.517 17 C -0.152 4.152 18 C -0.094 4.094 19 C -0.123 4.123 20 C -0.051 4.051 21 C -0.090 4.090 22 C -0.073 4.073 23 C -0.083 4.083 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.083 4.083 27 C -0.324 4.324 28 H 0.299 0.701 29 H 0.124 0.876 30 H 0.162 0.838 31 H 0.422 0.578 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.940 14.058 -14.506 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.166 4.166 3 Si 0.788 3.212 4 H -0.167 1.167 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.497 4.497 8 H 0.086 0.914 9 C 0.104 3.896 10 C -0.302 4.302 11 C -0.024 4.024 12 N -0.294 5.294 13 C 0.136 3.864 14 N -0.299 5.299 15 C 0.332 3.668 16 O -0.391 6.391 17 C -0.155 4.155 18 C -0.112 4.112 19 C -0.141 4.141 20 C -0.052 4.052 21 C -0.090 4.090 22 C -0.092 4.092 23 C -0.120 4.120 24 C -0.155 4.155 25 C -0.157 4.157 26 C -0.120 4.120 27 C -0.349 4.349 28 H 0.110 0.890 29 H 0.142 0.858 30 H 0.179 0.821 31 H 0.261 0.739 32 H 0.158 0.842 33 H 0.177 0.823 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 19.092 13.517 -14.345 27.441 hybrid contribution -1.701 0.151 0.655 1.829 sum 17.391 13.668 -13.690 26.013 Atomic orbital electron populations 1.69615 1.08997 1.31975 1.35428 1.26826 0.95472 1.04172 0.90087 0.85515 0.78899 0.76384 0.80376 1.16688 1.20161 1.18846 1.19481 0.91542 0.95558 1.43112 0.91374 1.17911 0.93311 0.90531 0.87826 1.22142 0.94468 1.05510 1.08119 1.22419 0.93053 0.94547 0.92390 1.67463 1.38885 1.07142 1.15907 1.18221 0.88242 0.89406 0.90558 1.43421 1.10893 1.27955 1.47675 1.19030 0.81299 0.84582 0.81919 1.90813 1.61220 1.35400 1.51645 1.19728 0.95835 0.98992 1.00974 1.21451 1.00108 0.93630 0.96032 1.21450 0.94915 0.99885 0.97857 1.20278 0.93383 0.95187 0.96306 1.19846 0.97389 0.95162 0.96621 1.21318 0.93185 0.98458 0.96253 1.20552 0.90015 1.01860 0.99570 1.21563 1.01791 0.95878 0.96272 1.21579 0.94353 0.96799 1.03012 1.20646 0.96341 0.97748 0.97252 1.21335 0.93271 1.08869 1.11447 0.89027 0.85788 0.82079 0.73876 0.84194 0.82320 0.86219 0.90027 0.90711 0.89903 0.91604 0.91833 0.89454 0.89029 0.88832 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.45 13.92 21.84 0.30 -43.14 16 2 C 0.05 2.65 5.48 85.29 0.47 3.11 16 3 Si 0.96 40.60 24.42 68.60 1.68 42.27 16 4 H -0.24 -9.01 6.67 99.48 0.66 -8.35 16 5 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.26 -11.92 6.65 99.48 0.66 -11.26 16 7 C -0.47 -25.36 9.67 23.52 0.23 -25.13 16 8 H 0.07 3.95 8.06 -2.91 -0.02 3.92 16 9 C 0.11 5.78 5.16 -21.11 -0.11 5.67 16 10 C -0.28 -13.22 9.90 22.84 0.23 -13.00 16 11 C 0.13 5.82 11.15 84.50 0.94 6.76 16 12 N -0.57 -28.35 7.84 -193.57 -1.52 -29.87 16 13 C 0.36 17.00 7.42 132.78 0.98 17.99 16 14 N -0.65 -25.01 5.33 -311.31 -1.66 -26.67 16 15 C 0.54 20.95 7.73 86.78 0.67 21.62 16 16 O -0.52 -24.11 14.60 -3.89 -0.06 -24.17 16 17 C -0.15 -4.48 5.87 -20.16 -0.12 -4.60 16 18 C -0.09 -2.09 9.54 22.46 0.21 -1.87 16 19 C -0.12 -2.11 9.58 22.33 0.21 -1.89 16 20 C -0.05 -0.87 5.75 -19.76 -0.11 -0.98 16 21 C -0.09 -1.84 5.73 -19.88 -0.11 -1.95 16 22 C -0.07 -1.98 9.16 22.62 0.21 -1.77 16 23 C -0.08 -1.27 5.66 29.74 0.17 -1.10 16 24 C -0.12 -1.23 5.98 30.61 0.18 -1.05 16 25 C -0.12 -1.06 5.98 30.61 0.18 -0.88 16 26 C -0.08 -0.84 5.67 29.75 0.17 -0.67 16 27 C -0.32 -15.49 6.94 22.99 0.16 -15.33 16 28 H 0.30 13.83 8.29 -92.71 -0.77 13.06 16 29 H 0.12 5.41 8.06 -2.91 -0.02 5.38 16 30 H 0.16 6.15 8.06 -2.91 -0.02 6.13 16 31 H 0.42 12.83 6.76 -92.71 -0.63 12.20 16 32 H 0.14 2.59 6.44 -2.91 -0.02 2.57 16 33 H 0.16 1.68 8.05 -2.91 -0.02 1.66 16 34 H 0.12 3.50 7.63 -2.91 -0.02 3.48 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 0.71 8.10 -2.39 -0.02 0.69 16 39 H 0.06 0.63 8.10 -2.39 -0.02 0.61 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.09 0.68 8.12 -2.39 -0.02 0.66 16 43 H 0.12 5.30 4.43 -2.91 -0.01 5.29 16 Total: -1.00 -70.22 349.70 3.64 -66.58 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.33 Total: 30.05 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 4.56 Total: -15.06 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -2.87 Total: -99.68 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.06 Total: -24.17 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.68 Total: 42.27 kcal Total: -70.22 3.64 -66.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335277200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.024 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds