Wall clock time and date at job start Tue Mar 31 2020 13:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86801 * 119.99658 * 2 1 4 4 H 1.48502 * 109.47073 * 239.99774 * 3 2 1 5 5 H 1.48499 * 109.47489 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46851 * 120.00195 * 3 2 1 7 7 C 1.40027 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99608 * 190.31016 * 7 2 1 9 9 C 1.41538 * 120.00217 * 10.30820 * 7 2 1 10 10 C 1.41174 * 120.99578 * 27.87325 * 9 7 2 11 11 C 1.37588 * 119.01430 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10796 * 359.73712 * 11 10 9 13 13 C 1.32465 * 122.23284 * 0.53615 * 12 11 10 14 14 N 1.39472 * 119.57986 * 179.74437 * 13 12 11 15 15 C 1.34780 * 119.99722 * 5.05611 * 14 13 12 16 16 O 1.21274 * 120.00184 * 5.35949 * 15 14 13 17 17 C 1.50707 * 119.99499 * 185.36087 * 15 14 13 18 18 H 1.09004 * 109.24737 * 41.91238 * 17 15 14 19 19 C 1.52736 * 109.24729 * 161.38131 * 17 15 14 20 20 C 1.53328 * 108.37821 * 171.38305 * 19 17 15 21 21 C 1.52739 * 108.38053 * 290.11175 * 20 19 17 22 22 C 1.50634 * 110.58368 * 51.09395 * 21 20 19 23 23 C 1.38918 * 117.74465 * 162.51523 * 22 21 20 24 24 C 1.37940 * 120.54168 * 179.97438 * 23 22 21 25 25 C 1.38263 * 119.76684 * 359.33249 * 24 23 22 26 26 C 1.37932 * 119.77454 * 0.69845 * 25 24 23 27 27 C 1.37659 * 122.56949 * 342.29278 * 22 21 20 28 28 C 1.38601 * 120.84127 * 359.46860 * 13 12 11 29 29 H 0.97001 * 119.99761 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.49111 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.44596 * 180.02562 * 11 10 9 32 32 H 0.97000 * 119.99934 * 185.05067 * 14 13 12 33 33 H 1.08996 * 109.68369 * 51.65854 * 19 17 15 34 34 H 1.09001 * 109.68699 * 291.09959 * 19 17 15 35 35 H 1.08996 * 109.68309 * 170.39416 * 20 19 17 36 36 H 1.08992 * 109.71809 * 49.85517 * 20 19 17 37 37 H 1.08993 * 109.25918 * 290.80569 * 21 20 19 38 38 H 1.09004 * 109.22154 * 171.35472 * 21 20 19 39 39 H 1.08001 * 119.72680 * 359.71287 * 23 22 21 40 40 H 1.07997 * 120.11182 * 179.60841 * 24 23 22 41 41 H 1.08001 * 120.11056 * 180.37503 * 25 24 23 42 42 H 1.07994 * 119.72456 * 179.75531 * 26 25 24 43 43 H 1.07997 * 120.60240 * 180.23164 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0746 -1.2202 0.1669 9 6 1.3171 -2.4285 -0.2204 10 6 0.1311 -2.4629 -0.9855 11 6 -0.5074 -3.6671 -1.1730 12 7 -0.0259 -4.7827 -0.6550 13 6 1.0797 -4.8034 0.0743 14 7 1.5357 -6.0125 0.5991 15 6 0.9117 -7.1637 0.2799 16 8 0.0164 -7.1616 -0.5381 17 6 1.3267 -8.4536 0.9395 18 1 1.4991 -8.2752 2.0010 19 6 0.2111 -9.4841 0.7767 20 6 0.7338 -10.8426 1.2584 21 6 1.7776 -11.3388 0.2598 22 6 2.8104 -10.2735 0.0000 23 6 4.0124 -10.6649 -0.5760 24 6 4.9984 -9.7369 -0.8396 25 6 4.7840 -8.4040 -0.5409 26 6 3.5915 -8.0135 0.0317 27 6 2.6009 -8.9479 0.3063 28 6 1.7922 -3.6398 0.3178 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2691 -1.5574 -1.4171 31 1 -1.4150 -3.7016 -1.7574 32 1 2.3020 -6.0249 1.1937 33 1 -0.0755 -9.5521 -0.2727 34 1 -0.6511 -9.1894 1.3749 35 1 -0.0897 -11.5546 1.3127 36 1 1.1899 -10.7333 2.2423 37 1 1.2843 -11.5973 -0.6772 38 1 2.2684 -12.2243 0.6638 39 1 4.1779 -11.7049 -0.8156 40 1 5.9327 -10.0497 -1.2817 41 1 5.5499 -7.6719 -0.7505 42 1 3.4265 -6.9728 0.2683 43 1 2.6952 -3.6617 0.9098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335277976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:27 Heat of formation + Delta-G solvation = 0.851628 kcal Electronic energy + Delta-G solvation = -26187.516304 eV Core-core repulsion = 22582.060470 eV Total energy + Delta-G solvation = -3605.455834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.95499 -40.57675 -39.39637 -36.94380 -36.20478 -35.43632 -33.64815 -32.62104 -31.19656 -30.46233 -29.78779 -27.93994 -25.65392 -23.93280 -23.75710 -23.58151 -22.81160 -21.38686 -20.21027 -19.69658 -18.34982 -17.77668 -17.55505 -16.92147 -16.55633 -16.31004 -16.09757 -15.91902 -15.79473 -15.29407 -14.89894 -14.71371 -14.69937 -14.23362 -14.20559 -14.09255 -13.80028 -13.36971 -13.19029 -13.00714 -12.89705 -12.83752 -12.59148 -12.32192 -12.11690 -11.89822 -11.84973 -11.64080 -11.46789 -11.26553 -11.20014 -10.97594 -9.99032 -9.75955 -9.64365 -9.45723 -8.89151 -8.64008 -6.61120 0.36670 0.43928 0.71697 0.94353 1.39805 1.52089 1.53677 1.84002 2.04670 2.19695 2.79788 2.81960 3.45670 3.60616 3.71338 3.73035 3.93395 4.04846 4.10883 4.14658 4.25380 4.37370 4.41511 4.53247 4.60262 4.70492 4.72626 4.80268 4.88095 4.95429 4.98917 5.00646 5.01728 5.09962 5.16513 5.21955 5.28275 5.43387 5.43654 5.55790 5.59664 5.61110 5.67886 5.92460 6.07910 6.09243 6.39145 6.56138 6.76826 6.80257 7.23837 7.78444 8.27496 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021239 B = 0.002960 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.029649 B = 9457.312062 C =10380.425823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.485 4.485 8 H 0.087 0.913 9 C 0.120 3.880 10 C -0.239 4.239 11 C 0.096 3.904 12 N -0.576 5.576 13 C 0.345 3.655 14 N -0.651 5.651 15 C 0.506 3.494 16 O -0.520 6.520 17 C -0.054 4.054 18 H 0.125 0.875 19 C -0.103 4.103 20 C -0.110 4.110 21 C -0.081 4.081 22 C -0.075 4.075 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.132 4.132 26 C -0.143 4.143 27 C -0.087 4.087 28 C -0.311 4.311 29 H 0.292 0.708 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.422 0.578 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.536 -18.237 3.890 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.812 3.188 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.516 4.516 8 H 0.105 0.895 9 C 0.112 3.888 10 C -0.262 4.262 11 C -0.055 4.055 12 N -0.296 5.296 13 C 0.117 3.883 14 N -0.301 5.301 15 C 0.293 3.707 16 O -0.392 6.392 17 C -0.075 4.075 18 H 0.142 0.858 19 C -0.141 4.141 20 C -0.147 4.147 21 C -0.118 4.118 22 C -0.076 4.076 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.150 4.150 26 C -0.162 4.162 27 C -0.087 4.087 28 C -0.336 4.336 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.262 0.738 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.151 0.849 42 H 0.132 0.868 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.200 -18.962 3.182 20.531 hybrid contribution 0.782 2.194 0.232 2.341 sum 7.982 -16.768 3.414 18.882 Atomic orbital electron populations 1.69811 1.09157 1.31030 1.34669 1.26889 0.95626 1.04806 0.90813 0.85102 0.78584 0.74910 0.80228 1.18316 1.19255 1.18036 1.19855 0.96402 0.90828 1.44524 0.89480 1.17985 0.91159 0.92805 0.86876 1.22210 1.00892 0.97844 1.05268 1.22191 0.98360 0.87838 0.97133 1.67296 1.14817 1.30325 1.17198 1.18326 0.91326 0.85345 0.93303 1.43797 1.33415 1.04159 1.48696 1.21379 0.81650 0.85397 0.82285 1.90744 1.29996 1.86093 1.32388 1.20283 0.95091 0.91095 1.01072 0.85771 1.21431 0.95866 0.94625 1.02200 1.21550 0.99018 0.94982 0.99159 1.20586 0.94642 0.96245 1.00322 1.19899 0.96482 0.93257 0.97915 1.21499 0.92712 1.01049 0.98931 1.21442 1.00223 0.92752 0.99368 1.21309 0.97134 0.97390 0.99152 1.21522 0.94715 0.99344 1.00600 1.19246 0.93901 0.94013 1.01542 1.21438 1.06092 0.92472 1.13642 0.89764 0.86407 0.84307 0.73823 0.92545 0.91174 0.89069 0.90307 0.90369 0.88016 0.83261 0.83500 0.84886 0.86805 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.00 10.83 21.84 0.24 -41.76 16 2 C 0.04 1.71 5.30 85.29 0.45 2.16 16 3 Si 0.99 36.55 29.57 68.60 2.03 38.58 16 4 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.49 -25.30 9.13 23.52 0.21 -25.09 16 8 H 0.09 4.26 7.87 -2.91 -0.02 4.24 16 9 C 0.12 6.50 5.58 -21.12 -0.12 6.38 16 10 C -0.24 -12.98 8.76 22.84 0.20 -12.78 16 11 C 0.10 5.02 11.15 84.50 0.94 5.96 16 12 N -0.58 -30.66 7.89 -193.53 -1.53 -32.19 16 13 C 0.35 16.68 7.40 132.75 0.98 17.66 16 14 N -0.65 -24.67 4.36 -308.65 -1.35 -26.01 16 15 C 0.51 19.03 6.38 87.66 0.56 19.59 16 16 O -0.52 -24.62 14.11 -3.01 -0.04 -24.66 16 17 C -0.05 -1.44 2.57 -12.40 -0.03 -1.47 16 18 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 19 C -0.10 -2.48 4.87 30.62 0.15 -2.33 16 20 C -0.11 -1.71 5.98 30.62 0.18 -1.53 16 21 C -0.08 -1.24 5.67 29.74 0.17 -1.08 16 22 C -0.08 -1.57 5.74 -19.86 -0.11 -1.68 16 23 C -0.12 -2.22 9.61 22.36 0.21 -2.00 16 24 C -0.12 -2.23 10.05 22.20 0.22 -2.01 16 25 C -0.13 -2.98 10.05 22.20 0.22 -2.76 16 26 C -0.14 -3.77 9.03 22.36 0.20 -3.57 16 27 C -0.09 -2.19 5.42 -19.86 -0.11 -2.30 16 28 C -0.31 -15.25 9.73 22.99 0.22 -15.03 16 29 H 0.29 13.46 8.29 -92.71 -0.77 12.69 16 30 H 0.12 6.53 6.25 -2.91 -0.02 6.51 16 31 H 0.14 6.56 8.06 -2.91 -0.02 6.53 16 32 H 0.42 12.56 7.08 -92.71 -0.66 11.90 16 33 H 0.06 1.64 7.54 -2.39 -0.02 1.62 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.07 8.10 -2.39 -0.02 1.05 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.03 8.13 -2.38 -0.02 1.01 16 39 H 0.15 1.75 8.05 -2.91 -0.02 1.73 16 40 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.11 3.13 4.89 -2.91 -0.01 3.12 16 43 H 0.12 5.29 8.06 -2.91 -0.02 5.26 16 Total: -1.00 -71.23 351.48 4.31 -66.92 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: 0.39 Total: 41.00 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 4.57 Total: -21.88 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -2.64 Total: -99.96 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -71.23 4.31 -66.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335277976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.772 kcal (2) G-P(sol) polarization free energy of solvation -71.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds