Wall clock time and date at job start Tue Mar 31 2020 13:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86793 * 120.00053 * 2 1 4 4 H 1.48495 * 109.47350 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47516 * 300.00397 * 3 2 1 6 6 H 1.48507 * 109.47155 * 60.00279 * 3 2 1 7 7 C 1.40030 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99888 * 195.11623 * 7 2 1 9 9 C 1.41544 * 120.00390 * 15.11478 * 7 2 1 10 10 C 1.41181 * 120.99232 * 25.52056 * 9 7 2 11 11 C 1.37585 * 119.00941 * 179.97438 * 10 9 7 12 12 N 1.32086 * 121.11257 * 359.72793 * 11 10 9 13 13 C 1.32464 * 122.23017 * 0.56482 * 12 11 10 14 14 N 1.39473 * 119.57966 * 179.70365 * 13 12 11 15 15 C 1.34770 * 119.99789 * 197.79629 * 14 13 12 16 16 O 1.21272 * 120.00638 * 5.87326 * 15 14 13 17 17 C 1.50705 * 119.99853 * 185.86853 * 15 14 13 18 18 H 1.08998 * 109.25148 * 336.94011 * 17 15 14 19 19 C 1.52734 * 109.25736 * 217.46588 * 17 15 14 20 20 C 1.53333 * 108.37377 * 188.67843 * 19 17 15 21 21 C 1.52731 * 108.37442 * 69.92566 * 20 19 17 22 22 C 1.50633 * 110.58856 * 308.94305 * 21 20 19 23 23 C 1.38914 * 117.75043 * 197.47145 * 22 21 20 24 24 C 1.37931 * 120.54798 * 180.23640 * 23 22 21 25 25 C 1.38270 * 119.77169 * 359.97438 * 24 23 22 26 26 C 1.37927 * 119.76775 * 359.90185 * 25 24 23 27 27 C 1.37665 * 122.57077 * 17.53126 * 22 21 20 28 28 C 1.38597 * 120.84223 * 359.43783 * 13 12 11 29 29 H 0.97000 * 119.99403 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.49134 * 359.95998 * 10 9 7 31 31 H 1.08001 * 119.44431 * 180.02562 * 11 10 9 32 32 H 0.97000 * 119.99737 * 17.80189 * 14 13 12 33 33 H 1.09001 * 109.68415 * 308.39984 * 19 17 15 34 34 H 1.09001 * 109.67894 * 68.95863 * 19 17 15 35 35 H 1.09001 * 109.68215 * 189.64975 * 20 19 17 36 36 H 1.08999 * 109.68049 * 310.16659 * 20 19 17 37 37 H 1.08998 * 109.25515 * 69.22548 * 21 20 19 38 38 H 1.08999 * 109.25401 * 188.69587 * 21 20 19 39 39 H 1.08000 * 119.72877 * 0.21773 * 23 22 21 40 40 H 1.07995 * 120.11632 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.11124 * 179.91571 * 25 24 23 42 42 H 1.08004 * 119.72301 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.60347 * 180.24652 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2124 6 1 1.8828 2.3964 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0596 -1.2290 0.2434 9 6 1.3366 -2.4172 -0.3207 10 6 0.1803 -2.4121 -1.1306 11 6 -0.4393 -3.6067 -1.4167 12 7 0.0331 -4.7491 -0.9515 13 6 1.1108 -4.8076 -0.1835 14 7 1.5580 -6.0438 0.2824 15 6 2.4066 -6.1031 1.3277 16 8 2.6980 -5.0919 1.9305 17 6 2.9935 -7.4261 1.7477 18 1 2.3467 -8.2322 1.4015 19 6 3.0873 -7.4746 3.2714 20 6 3.8811 -8.7253 3.6672 21 6 5.3393 -8.5179 3.2629 22 6 5.4335 -8.0875 1.8225 23 6 6.6637 -8.2119 1.1893 24 6 6.8163 -7.8306 -0.1274 25 6 5.7362 -7.3207 -0.8241 26 6 4.5133 -7.1987 -0.1980 27 6 4.3574 -7.5827 1.1279 28 6 1.8027 -3.6565 0.1587 29 1 -0.4849 0.8401 0.0004 30 1 -0.2122 -1.4841 -1.5196 31 1 -1.3241 -3.6110 -2.0360 32 1 1.2583 -6.8608 -0.1460 33 1 3.5992 -6.5841 3.6363 34 1 2.0861 -7.5245 3.6994 35 1 3.8167 -8.8752 4.7449 36 1 3.4765 -9.5956 3.1506 37 1 5.7825 -7.7502 3.8971 38 1 5.8852 -9.4522 3.3947 39 1 7.5078 -8.6102 1.7327 40 1 7.7757 -7.9308 -0.6129 41 1 5.8498 -7.0192 -1.8548 42 1 3.6702 -6.8000 -0.7427 43 1 2.6832 -3.7090 0.7819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335277978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:30 Heat of formation + Delta-G solvation = 11.308824 kcal Electronic energy + Delta-G solvation = -26431.062994 eV Core-core repulsion = 22826.060619 eV Total energy + Delta-G solvation = -3605.002376 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79573 -39.27686 -37.77446 -35.97703 -34.54250 -33.57533 -32.69004 -30.63871 -30.30631 -29.30398 -28.27020 -25.91397 -24.56202 -22.86699 -22.69097 -21.88987 -21.21622 -20.04253 -19.31381 -17.86614 -17.09251 -16.49689 -15.97169 -15.61036 -15.44423 -15.11873 -14.67961 -14.37837 -14.24539 -14.00206 -13.67351 -13.51888 -13.26087 -13.12525 -12.82098 -12.61124 -12.44859 -12.21459 -12.09009 -11.73638 -11.46384 -11.39937 -11.17972 -11.10648 -11.00284 -10.71335 -10.43981 -10.41743 -10.06478 -9.80357 -9.32297 -9.08900 -8.74995 -8.53767 -8.06008 -7.95093 -7.04172 -6.79376 -4.54338 1.29520 1.35592 2.49445 2.77598 3.05705 3.11600 3.12675 3.36282 3.41685 3.76522 3.90610 4.46682 4.54324 4.67960 4.78338 4.84351 4.88932 5.04115 5.08946 5.21186 5.27359 5.34146 5.43410 5.56146 5.70053 5.73280 5.75451 5.85055 5.90379 5.92262 5.99302 6.09963 6.26854 6.44824 6.51624 6.56064 6.57960 6.71815 6.93660 6.97436 7.04524 7.19890 7.43076 7.49913 7.86294 8.00459 8.12765 8.53073 8.63666 8.80517 8.83585 9.54404 10.12520 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.003403 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.023576 B = 8225.092713 C = 8635.983528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.137 3.863 10 C -0.223 4.223 11 C 0.103 3.897 12 N -0.601 5.601 13 C 0.332 3.668 14 N -0.652 5.652 15 C 0.516 3.484 16 O -0.501 6.501 17 C -0.060 4.060 18 H 0.098 0.902 19 C -0.108 4.108 20 C -0.117 4.117 21 C -0.081 4.081 22 C -0.068 4.068 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.113 4.113 27 C -0.064 4.064 28 C -0.271 4.271 29 H 0.282 0.718 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.401 0.599 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.004 -15.462 2.807 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.128 3.872 10 C -0.247 4.247 11 C -0.048 4.048 12 N -0.322 5.322 13 C 0.108 3.892 14 N -0.296 5.296 15 C 0.301 3.699 16 O -0.374 6.374 17 C -0.082 4.082 18 H 0.116 0.884 19 C -0.146 4.146 20 C -0.154 4.154 21 C -0.118 4.118 22 C -0.068 4.068 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.131 4.131 27 C -0.065 4.065 28 C -0.296 4.296 29 H 0.093 0.907 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.236 0.764 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.605 -15.382 3.053 17.888 hybrid contribution 0.408 1.248 -0.196 1.327 sum 9.013 -14.134 2.857 17.005 Atomic orbital electron populations 1.69789 1.07675 1.29339 1.34522 1.25965 0.94788 1.01495 0.91956 0.86193 0.81029 0.80539 0.78616 1.18256 1.19593 1.19827 1.19627 0.97372 0.90471 1.40546 0.90042 1.17791 0.90490 0.92073 0.86827 1.22160 1.00943 0.97935 1.03644 1.21644 0.97750 0.87672 0.97741 1.66598 1.14790 1.30984 1.19781 1.17931 0.92044 0.84001 0.95256 1.43337 1.45742 1.08281 1.32289 1.20329 0.79027 0.90865 0.79634 1.90674 1.58794 1.35473 1.52507 1.20165 0.94482 0.95648 0.97862 0.88369 1.21497 1.01488 0.99512 0.92062 1.21545 0.94716 0.97888 1.01281 1.20501 0.97590 1.01402 0.92345 1.19541 0.92663 0.98835 0.95756 1.21092 0.96652 1.01377 0.95102 1.21072 0.98686 0.99195 0.94711 1.21064 0.92896 0.99595 1.00164 1.21342 0.98415 0.98984 0.94389 1.19108 0.93630 1.00005 0.93746 1.22262 1.05930 0.91561 1.09823 0.90735 0.85609 0.85848 0.76416 0.89708 0.90909 0.90943 0.91507 0.90339 0.90760 0.86184 0.86130 0.85943 0.85815 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.43 10.93 55.55 0.61 -19.82 16 2 C 0.08 1.96 5.22 -17.34 -0.09 1.87 16 3 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.45 -12.29 9.12 -37.65 -0.34 -12.64 16 8 H 0.08 2.19 7.89 -52.48 -0.41 1.77 16 9 C 0.14 3.79 5.59 -106.55 -0.60 3.20 16 10 C -0.22 -5.88 8.78 -38.70 -0.34 -6.22 16 11 C 0.10 2.50 11.15 -17.68 -0.20 2.30 16 12 N -0.60 -14.46 10.36 -12.52 -0.13 -14.59 16 13 C 0.33 7.91 7.52 -154.70 -1.16 6.75 16 14 N -0.65 -12.20 4.64 -11.49 -0.05 -12.26 16 15 C 0.52 9.34 5.53 -10.99 -0.06 9.28 16 16 O -0.50 -11.27 12.93 5.56 0.07 -11.20 16 17 C -0.06 -0.80 2.59 -93.09 -0.24 -1.04 16 18 H 0.10 1.05 8.05 -51.93 -0.42 0.63 16 19 C -0.11 -1.29 5.08 -26.70 -0.14 -1.42 16 20 C -0.12 -1.04 5.98 -26.70 -0.16 -1.20 16 21 C -0.08 -0.76 5.67 -28.05 -0.16 -0.91 16 22 C -0.07 -0.80 5.74 -104.61 -0.60 -1.40 16 23 C -0.12 -1.35 9.61 -39.44 -0.38 -1.73 16 24 C -0.12 -1.31 10.05 -39.68 -0.40 -1.71 16 25 C -0.12 -1.49 10.05 -39.68 -0.40 -1.89 16 26 C -0.11 -1.60 9.04 -39.45 -0.36 -1.96 16 27 C -0.06 -0.87 5.42 -104.61 -0.57 -1.43 16 28 C -0.27 -7.18 8.61 -38.48 -0.33 -7.51 16 29 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 30 H 0.13 3.34 6.26 -52.49 -0.33 3.01 16 31 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 32 H 0.40 6.15 8.76 -40.82 -0.36 5.80 16 33 H 0.08 1.19 7.52 -51.93 -0.39 0.80 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 39 H 0.12 1.00 8.05 -52.49 -0.42 0.58 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.85 6.67 -52.48 -0.35 1.50 16 43 H 0.14 3.72 5.30 -52.54 -0.28 3.44 16 LS Contribution 352.13 15.07 5.31 5.31 Total: -1.00 -31.79 352.13 -11.22 -43.00 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -5.47 Total: 13.41 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -6.52 Total: -17.68 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.42 Total: -46.67 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.07 Total: -11.20 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.79 -11.22 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335277978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.310 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds