Wall clock time and date at job start Tue Mar 31 2020 14:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 120.00627 * 2 1 4 4 H 1.48496 * 109.47262 * 83.96723 * 3 2 1 5 5 H 1.48504 * 109.46589 * 323.97002 * 3 2 1 6 6 H 1.48492 * 109.47299 * 203.97213 * 3 2 1 7 7 C 1.39942 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00232 * 35.73216 * 7 2 1 9 9 C 1.41438 * 119.99864 * 215.73640 * 7 2 1 10 10 C 1.40790 * 120.17635 * 23.41147 * 9 7 2 11 11 C 1.37711 * 120.03829 * 179.97438 * 10 9 7 12 12 C 1.38371 * 120.41340 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.35691 * 359.97438 * 12 11 10 14 14 C 1.47883 * 120.02411 * 179.97438 * 13 12 11 15 15 O 1.21551 * 119.99957 * 352.77500 * 14 13 12 16 16 N 1.34777 * 120.00222 * 172.78016 * 14 13 12 17 17 C 1.47029 * 125.64492 * 5.62397 * 16 14 13 18 18 C 1.54335 * 107.26286 * 178.85491 * 17 16 14 19 19 C 1.55160 * 103.02253 * 338.13788 * 18 17 16 20 20 H 1.09000 * 111.03995 * 277.22422 * 19 18 17 21 21 C 1.50694 * 111.00129 * 153.38365 * 19 18 17 22 22 C 1.38674 * 120.41655 * 126.35540 * 21 19 18 23 23 C 1.38631 * 118.41941 * 179.97438 * 22 21 19 24 24 C 1.38221 * 119.15976 * 359.97438 * 23 22 21 25 25 N 1.31854 * 120.77135 * 0.02562 * 24 23 22 26 26 C 1.31884 * 121.71771 * 359.70464 * 25 24 23 27 27 C 1.47427 * 125.65253 * 185.93889 * 16 14 13 28 28 C 1.39033 * 119.94635 * 359.72065 * 13 12 11 29 29 H 0.96994 * 120.00722 * 185.09650 * 1 2 3 30 30 H 1.07996 * 119.97957 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.79535 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.82146 * 179.97438 * 12 11 10 33 33 H 1.09000 * 109.88338 * 298.39674 * 17 16 14 34 34 H 1.08994 * 109.88158 * 59.56552 * 17 16 14 35 35 H 1.08999 * 110.84650 * 219.67571 * 18 17 16 36 36 H 1.08997 * 110.51941 * 96.45687 * 18 17 16 37 37 H 1.07996 * 120.78960 * 0.02568 * 22 21 19 38 38 H 1.07996 * 120.41967 * 180.02562 * 23 22 21 39 39 H 1.08009 * 119.61560 * 180.02562 * 24 23 22 40 40 H 1.08004 * 119.61502 * 180.31279 * 26 25 24 41 41 H 1.09000 * 110.36144 * 322.92708 * 27 16 14 42 42 H 1.08994 * 110.36623 * 85.13956 * 27 16 14 43 43 H 1.08007 * 120.19945 * 180.27556 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.3626 2.1199 1.3923 5 1 1.5094 2.6124 -0.8236 6 1 3.5978 1.4065 -0.5688 7 6 2.0079 -1.2120 0.0005 8 1 1.6203 -2.0595 -0.5453 9 6 3.2225 -1.3271 0.7160 10 6 3.4947 -0.4612 1.7923 11 6 4.6780 -0.5761 2.4873 12 6 5.6061 -1.5402 2.1356 13 6 5.3527 -2.4101 1.0698 14 6 6.3500 -3.4374 0.6999 15 8 7.4426 -3.4433 1.2326 16 7 6.0476 -4.3671 -0.2278 17 6 4.8166 -4.4075 -1.0308 18 6 4.9239 -5.6253 -1.9727 19 6 6.4528 -5.8813 -2.0404 20 1 6.9270 -5.2273 -2.7722 21 6 6.7452 -7.3281 -2.3436 22 6 7.5679 -7.6704 -3.4062 23 6 7.8095 -9.0141 -3.6474 24 6 7.2269 -9.9611 -2.8263 25 7 6.4497 -9.5990 -1.8246 26 6 6.2022 -8.3304 -1.5625 27 6 6.8933 -5.5155 -0.6010 28 6 4.1601 -2.3114 0.3620 29 1 -0.4851 -0.8366 0.0746 30 1 2.7750 0.2936 2.0730 31 1 4.8829 0.0904 3.3119 32 1 6.5313 -1.6216 2.6870 33 1 3.9511 -4.5170 -0.3773 34 1 4.7270 -3.4937 -1.6181 35 1 4.5287 -5.3879 -2.9604 36 1 4.4075 -6.4851 -1.5460 37 1 8.0105 -6.9084 -4.0304 38 1 8.4455 -9.3170 -4.4660 39 1 7.4105 -11.0100 -3.0072 40 1 5.5643 -8.0719 -0.7301 41 1 7.9457 -5.2320 -0.5869 42 1 6.7173 -6.3519 0.0754 43 1 3.9583 -2.9838 -0.4588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335360560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:19 Heat of formation + Delta-G solvation = 35.776773 kcal Electronic energy + Delta-G solvation = -25935.256146 eV Core-core repulsion = 22331.314780 eV Total energy + Delta-G solvation = -3603.941366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80570 -39.76577 -37.67182 -36.96484 -33.87781 -33.65937 -32.34772 -30.57093 -30.35881 -30.12295 -28.19958 -24.96634 -24.76890 -23.98119 -23.21168 -21.81180 -20.95912 -20.36737 -19.49741 -18.03603 -17.54332 -16.84568 -16.44635 -15.93559 -15.54323 -15.20037 -14.87273 -14.28142 -14.16431 -14.09748 -13.84394 -13.65360 -13.52246 -13.34210 -13.16742 -12.65930 -12.51871 -12.44783 -12.36984 -11.91953 -11.71245 -11.36448 -11.26685 -11.09865 -10.90826 -10.42739 -10.34182 -10.07564 -10.02887 -9.70353 -9.62661 -9.32316 -9.09496 -9.01617 -8.46238 -7.88394 -7.79935 -7.49055 -4.60617 0.79291 0.98918 1.94827 2.60387 3.14759 3.20332 3.27193 3.43233 3.48802 3.62264 3.94424 4.11300 4.35689 4.38271 4.44069 4.47887 4.62958 4.68495 4.79876 4.94671 5.17181 5.20730 5.28413 5.29547 5.32102 5.49157 5.61759 5.75591 5.76945 5.80276 5.85771 5.95411 5.98635 6.09380 6.27106 6.38842 6.43924 6.47801 6.62848 6.85549 7.13304 7.37888 7.48091 7.55207 7.65821 7.69670 7.80046 7.86345 8.26517 8.46472 8.60320 8.66419 9.78314 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.002945 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.955441 B = 9506.946056 C =10374.405655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.057 3.943 3 Si 1.056 2.944 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.080 0.920 9 C 0.088 3.912 10 C -0.224 4.224 11 C -0.083 4.083 12 C -0.195 4.195 13 C -0.099 4.099 14 C 0.580 3.420 15 O -0.552 6.552 16 N -0.619 5.619 17 C 0.095 3.905 18 C -0.128 4.128 19 C -0.061 4.061 20 H 0.096 0.904 21 C -0.118 4.118 22 C -0.070 4.070 23 C -0.171 4.171 24 C 0.091 3.909 25 N -0.482 5.482 26 C 0.105 3.895 27 C 0.117 3.883 28 C -0.220 4.220 29 H 0.291 0.709 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.189 -12.827 -8.482 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.167 4.167 3 Si 0.880 3.120 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.556 4.556 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.244 4.244 11 C -0.102 4.102 12 C -0.215 4.215 13 C -0.102 4.102 14 C 0.373 3.627 15 O -0.431 6.431 16 N -0.353 5.353 17 C -0.027 4.027 18 C -0.166 4.166 19 C -0.080 4.080 20 H 0.115 0.885 21 C -0.121 4.121 22 C -0.096 4.096 23 C -0.191 4.191 24 C -0.066 4.066 25 N -0.190 5.190 26 C -0.052 4.052 27 C -0.006 4.006 28 C -0.239 4.239 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.173 0.827 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.090 -11.830 -7.697 16.788 hybrid contribution 0.373 -1.078 -0.500 1.245 sum 9.463 -12.908 -8.196 17.982 Atomic orbital electron populations 1.70551 1.08840 1.33238 1.28476 1.27220 0.95137 1.04586 0.89726 0.83851 0.76417 0.73503 0.78228 1.19889 1.20997 1.18847 1.20483 1.05128 0.99995 1.29951 0.90198 1.17620 0.91758 0.90974 0.91081 1.21246 0.98710 1.04700 0.99706 1.20586 0.94088 0.97109 0.98385 1.20391 1.00445 0.99832 1.00876 1.19328 0.94620 0.97020 0.99244 1.18602 0.87077 0.79970 0.77024 1.90678 1.23945 1.74395 1.54106 1.48295 1.20357 1.26833 1.39827 1.22616 0.88220 0.98275 0.93591 1.22920 0.94439 0.98578 1.00694 1.21289 0.97220 0.91822 0.97705 0.88521 1.20637 0.98599 0.96054 0.96784 1.21540 0.95462 0.96621 0.96002 1.22146 1.01770 0.93776 1.01420 1.22790 0.92855 1.00200 0.90753 1.67731 1.14034 1.19582 1.17701 1.22695 0.96950 0.87472 0.98070 1.22188 0.96313 0.88886 0.93236 1.22467 0.93762 1.04611 1.03028 0.89733 0.87891 0.88237 0.87764 0.89531 0.89590 0.89482 0.90229 0.84709 0.84761 0.82853 0.82699 0.90232 0.91489 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.85 13.65 55.55 0.76 -19.09 16 2 C 0.06 1.41 5.10 -17.34 -0.09 1.32 16 3 Si 1.06 22.79 25.79 -169.99 -4.38 18.41 16 4 H -0.27 -5.68 6.66 56.52 0.38 -5.31 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.53 -13.16 9.28 -37.73 -0.35 -13.51 16 8 H 0.08 2.00 8.06 -52.49 -0.42 1.58 16 9 C 0.09 2.14 5.15 -106.87 -0.55 1.59 16 10 C -0.22 -5.28 7.69 -38.81 -0.30 -5.58 16 11 C -0.08 -1.82 10.01 -39.72 -0.40 -2.22 16 12 C -0.20 -4.36 9.60 -38.92 -0.37 -4.73 16 13 C -0.10 -2.18 5.87 -105.04 -0.62 -2.80 16 14 C 0.58 11.85 7.81 -12.31 -0.10 11.75 16 15 O -0.55 -12.56 16.59 5.32 0.09 -12.47 16 16 N -0.62 -9.95 3.33 -176.37 -0.59 -10.53 16 17 C 0.10 1.30 4.87 -3.05 -0.01 1.28 16 18 C -0.13 -1.28 6.35 -24.89 -0.16 -1.44 16 19 C -0.06 -0.60 3.28 -89.62 -0.29 -0.89 16 20 H 0.10 0.89 8.01 -51.93 -0.42 0.47 16 21 C -0.12 -1.11 5.00 -104.48 -0.52 -1.63 16 22 C -0.07 -0.57 9.83 -39.28 -0.39 -0.95 16 23 C -0.17 -1.26 10.11 -39.44 -0.40 -1.66 16 24 C 0.09 0.78 11.18 -17.55 -0.20 0.59 16 25 N -0.48 -5.34 10.36 -13.25 -0.14 -5.48 16 26 C 0.11 1.09 9.47 -17.55 -0.17 0.92 16 27 C 0.12 1.50 6.35 -2.53 -0.02 1.49 16 28 C -0.22 -4.82 8.36 -38.44 -0.32 -5.14 16 29 H 0.29 7.08 8.73 -40.82 -0.36 6.73 16 30 H 0.10 2.40 5.21 -52.49 -0.27 2.13 16 31 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.10 2.25 7.65 -52.48 -0.40 1.85 16 33 H 0.09 1.26 6.74 -51.93 -0.35 0.91 16 34 H 0.09 1.23 6.74 -51.93 -0.35 0.88 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.74 6.81 -51.93 -0.35 0.38 16 37 H 0.14 0.82 8.04 -52.49 -0.42 0.40 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 40 H 0.16 1.49 7.03 -52.48 -0.37 1.12 16 41 H 0.08 1.09 7.98 -51.93 -0.41 0.68 16 42 H 0.07 0.83 7.08 -51.93 -0.37 0.47 16 43 H 0.14 2.59 2.73 -58.65 -0.16 2.43 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -29.70 349.03 -9.42 -39.12 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.17 Total: 6.40 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -5.25 Total: -21.61 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.03 Total: -35.10 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.38 Total: 18.41 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.70 -9.42 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335360560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.892 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds