Wall clock time and date at job start Tue Mar 31 2020 14:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 120.00627 * 2 1 4 4 H 1.48496 * 109.47262 * 83.96723 * 3 2 1 5 5 H 1.48504 * 109.46589 * 323.97002 * 3 2 1 6 6 H 1.48492 * 109.47299 * 203.97213 * 3 2 1 7 7 C 1.39942 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00232 * 35.73216 * 7 2 1 9 9 C 1.41438 * 119.99864 * 215.73640 * 7 2 1 10 10 C 1.40790 * 120.17635 * 23.41147 * 9 7 2 11 11 C 1.37711 * 120.03829 * 179.97438 * 10 9 7 12 12 C 1.38371 * 120.41340 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.35691 * 359.97438 * 12 11 10 14 14 C 1.47883 * 120.02411 * 179.97438 * 13 12 11 15 15 O 1.21551 * 119.99957 * 352.77500 * 14 13 12 16 16 N 1.34777 * 120.00222 * 172.78016 * 14 13 12 17 17 C 1.47029 * 125.64492 * 5.62397 * 16 14 13 18 18 C 1.54335 * 107.26286 * 178.85491 * 17 16 14 19 19 C 1.55160 * 103.02253 * 338.13788 * 18 17 16 20 20 H 1.09000 * 111.03995 * 277.22422 * 19 18 17 21 21 C 1.50694 * 111.00129 * 153.38365 * 19 18 17 22 22 C 1.38674 * 120.41655 * 126.35540 * 21 19 18 23 23 C 1.38631 * 118.41941 * 179.97438 * 22 21 19 24 24 C 1.38221 * 119.15976 * 359.97438 * 23 22 21 25 25 N 1.31854 * 120.77135 * 0.02562 * 24 23 22 26 26 C 1.31884 * 121.71771 * 359.70464 * 25 24 23 27 27 C 1.47427 * 125.65253 * 185.93889 * 16 14 13 28 28 C 1.39033 * 119.94635 * 359.72065 * 13 12 11 29 29 H 0.96994 * 120.00722 * 185.09650 * 1 2 3 30 30 H 1.07996 * 119.97957 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.79535 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.82146 * 179.97438 * 12 11 10 33 33 H 1.09000 * 109.88338 * 298.39674 * 17 16 14 34 34 H 1.08994 * 109.88158 * 59.56552 * 17 16 14 35 35 H 1.08999 * 110.84650 * 219.67571 * 18 17 16 36 36 H 1.08997 * 110.51941 * 96.45687 * 18 17 16 37 37 H 1.07996 * 120.78960 * 0.02568 * 22 21 19 38 38 H 1.07996 * 120.41967 * 180.02562 * 23 22 21 39 39 H 1.08009 * 119.61560 * 180.02562 * 24 23 22 40 40 H 1.08004 * 119.61502 * 180.31279 * 26 25 24 41 41 H 1.09000 * 110.36144 * 322.92708 * 27 16 14 42 42 H 1.08994 * 110.36623 * 85.13956 * 27 16 14 43 43 H 1.08007 * 120.19945 * 180.27556 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.3626 2.1199 1.3923 5 1 1.5094 2.6124 -0.8236 6 1 3.5978 1.4065 -0.5688 7 6 2.0079 -1.2120 0.0005 8 1 1.6203 -2.0595 -0.5453 9 6 3.2225 -1.3271 0.7160 10 6 3.4947 -0.4612 1.7923 11 6 4.6780 -0.5761 2.4873 12 6 5.6061 -1.5402 2.1356 13 6 5.3527 -2.4101 1.0698 14 6 6.3500 -3.4374 0.6999 15 8 7.4426 -3.4433 1.2326 16 7 6.0476 -4.3671 -0.2278 17 6 4.8166 -4.4075 -1.0308 18 6 4.9239 -5.6253 -1.9727 19 6 6.4528 -5.8813 -2.0404 20 1 6.9270 -5.2273 -2.7722 21 6 6.7452 -7.3281 -2.3436 22 6 7.5679 -7.6704 -3.4062 23 6 7.8095 -9.0141 -3.6474 24 6 7.2269 -9.9611 -2.8263 25 7 6.4497 -9.5990 -1.8246 26 6 6.2022 -8.3304 -1.5625 27 6 6.8933 -5.5155 -0.6010 28 6 4.1601 -2.3114 0.3620 29 1 -0.4851 -0.8366 0.0746 30 1 2.7750 0.2936 2.0730 31 1 4.8829 0.0904 3.3119 32 1 6.5313 -1.6216 2.6870 33 1 3.9511 -4.5170 -0.3773 34 1 4.7270 -3.4937 -1.6181 35 1 4.5287 -5.3879 -2.9604 36 1 4.4075 -6.4851 -1.5460 37 1 8.0105 -6.9084 -4.0304 38 1 8.4455 -9.3170 -4.4660 39 1 7.4105 -11.0100 -3.0072 40 1 5.5643 -8.0719 -0.7301 41 1 7.9457 -5.2320 -0.5869 42 1 6.7173 -6.3519 0.0754 43 1 3.9583 -2.9838 -0.4588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335360560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:19 Heat of formation + Delta-G solvation = 19.570202 kcal Electronic energy + Delta-G solvation = -25935.958915 eV Core-core repulsion = 22331.314780 eV Total energy + Delta-G solvation = -3604.644135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.76600 -40.92975 -39.16265 -38.46697 -35.70037 -34.68979 -33.07467 -32.19612 -31.95373 -31.20537 -29.31560 -26.76543 -26.01353 -24.73314 -24.12102 -23.30310 -22.40133 -21.43694 -21.12798 -19.69369 -18.26020 -18.09356 -17.53542 -17.19831 -16.89480 -16.64949 -16.00057 -15.74408 -15.56903 -15.35154 -14.96961 -14.82941 -14.53231 -14.46812 -14.28127 -14.01548 -13.91667 -13.87418 -13.60719 -13.18283 -13.01663 -12.85675 -12.57532 -12.41402 -12.15843 -11.99680 -11.80737 -11.71966 -11.29020 -10.91369 -10.82268 -10.69603 -10.37422 -9.89548 -9.84800 -9.66712 -9.55565 -9.38601 -6.50972 0.13240 0.21503 0.35820 0.81143 1.41200 1.54562 1.74333 1.88443 1.94652 2.19505 2.57066 2.80669 3.35653 3.45343 3.46090 3.56071 3.72015 3.88384 3.99830 4.04285 4.11496 4.14175 4.22799 4.31108 4.39665 4.52589 4.57128 4.63144 4.67648 4.73226 4.82042 4.87443 4.90929 4.93468 5.04040 5.08264 5.19483 5.23946 5.37330 5.41781 5.48972 5.70670 5.77282 5.78654 5.86324 5.98690 6.35345 6.40278 6.61915 6.76948 7.03791 7.07568 7.88718 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.002945 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.955441 B = 9506.946056 C =10374.405655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.033 3.967 3 Si 1.082 2.918 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.070 3.930 10 C -0.240 4.240 11 C -0.083 4.083 12 C -0.201 4.201 13 C -0.110 4.110 14 C 0.575 3.425 15 O -0.583 6.583 16 N -0.612 5.612 17 C 0.089 3.911 18 C -0.117 4.117 19 C -0.043 4.043 20 H 0.110 0.890 21 C -0.124 4.124 22 C -0.071 4.071 23 C -0.165 4.165 24 C 0.080 3.920 25 N -0.514 5.514 26 C 0.089 3.911 27 C 0.111 3.889 28 C -0.219 4.219 29 H 0.287 0.713 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.176 0.824 40 H 0.152 0.848 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.636 -13.593 -10.043 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.187 4.187 3 Si 0.902 3.098 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.068 3.932 10 C -0.259 4.259 11 C -0.101 4.101 12 C -0.221 4.221 13 C -0.113 4.113 14 C 0.367 3.633 15 O -0.465 6.465 16 N -0.344 5.344 17 C -0.033 4.033 18 C -0.154 4.154 19 C -0.062 4.062 20 H 0.129 0.871 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.184 4.184 24 C -0.076 4.076 25 N -0.223 5.223 26 C -0.067 4.067 27 C -0.010 4.010 28 C -0.237 4.237 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.148 0.852 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.176 0.824 38 H 0.183 0.817 39 H 0.193 0.807 40 H 0.169 0.831 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.511 -12.628 -9.282 18.871 hybrid contribution 0.039 -1.018 -0.017 1.019 sum 10.549 -13.646 -9.299 19.595 Atomic orbital electron populations 1.70603 1.09243 1.33019 1.30323 1.28037 0.95233 1.06486 0.88963 0.83508 0.75525 0.71652 0.79083 1.18607 1.19658 1.19196 1.20475 1.06026 1.00100 1.31214 0.91572 1.17854 0.92021 0.91944 0.91424 1.21378 0.99507 1.04978 1.00033 1.20877 0.93182 0.97222 0.98794 1.20666 1.00707 0.99817 1.00919 1.19630 0.95027 0.97518 0.99155 1.18385 0.86376 0.80631 0.77934 1.90652 1.24807 1.75434 1.55630 1.48296 1.21493 1.26301 1.38292 1.22686 0.86794 1.00101 0.93742 1.22888 0.94925 0.96877 1.00726 1.21160 0.96811 0.92624 0.95655 0.87147 1.20527 0.99480 0.95088 0.97539 1.21881 0.94616 0.97677 0.95548 1.22488 1.01188 0.93193 1.01579 1.23276 0.92267 1.01791 0.90266 1.67710 1.15435 1.20007 1.19174 1.22728 0.97641 0.87810 0.98563 1.22404 0.95442 0.87593 0.95597 1.22818 0.93230 1.04216 1.03469 0.90204 0.87913 0.85191 0.87243 0.90586 0.89977 0.87276 0.89408 0.82412 0.81679 0.80716 0.83066 0.91015 0.91116 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.20 13.65 21.83 0.30 -40.90 16 2 C 0.03 1.63 5.10 85.25 0.43 2.06 16 3 Si 1.08 45.47 25.79 68.60 1.77 47.24 16 4 H -0.26 -10.38 6.66 99.48 0.66 -9.72 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.55 -27.88 9.28 23.47 0.22 -27.66 16 8 H 0.07 3.42 8.06 -2.91 -0.02 3.40 16 9 C 0.07 3.40 5.15 -21.32 -0.11 3.29 16 10 C -0.24 -11.17 7.69 22.77 0.18 -10.99 16 11 C -0.08 -3.52 10.01 22.18 0.22 -3.30 16 12 C -0.20 -8.83 9.60 22.70 0.22 -8.62 16 13 C -0.11 -4.82 5.87 -20.13 -0.12 -4.94 16 14 C 0.57 23.35 7.81 86.80 0.68 24.03 16 15 O -0.58 -26.55 16.59 -3.88 -0.06 -26.61 16 16 N -0.61 -19.23 3.33 -830.20 -2.76 -21.99 16 17 C 0.09 2.32 4.87 86.73 0.42 2.74 16 18 C -0.12 -2.06 6.35 31.79 0.20 -1.86 16 19 C -0.04 -0.74 3.28 -10.15 -0.03 -0.78 16 20 H 0.11 1.66 8.01 -2.39 -0.02 1.64 16 21 C -0.12 -2.04 5.00 -19.77 -0.10 -2.13 16 22 C -0.07 -0.91 9.83 22.47 0.22 -0.69 16 23 C -0.17 -1.88 10.11 22.36 0.23 -1.65 16 24 C 0.08 1.21 11.18 84.69 0.95 2.15 16 25 N -0.51 -10.76 10.36 -195.83 -2.03 -12.79 16 26 C 0.09 1.74 9.47 84.67 0.80 2.54 16 27 C 0.11 2.75 6.35 86.86 0.55 3.30 16 28 C -0.22 -9.59 8.36 23.01 0.19 -9.39 16 29 H 0.29 14.31 8.73 -92.71 -0.81 13.51 16 30 H 0.10 4.73 5.21 -2.91 -0.02 4.72 16 31 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 32 H 0.11 4.66 7.65 -2.91 -0.02 4.64 16 33 H 0.08 2.18 6.74 -2.39 -0.02 2.17 16 34 H 0.08 2.26 6.74 -2.39 -0.02 2.24 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.46 6.81 -2.39 -0.02 1.44 16 37 H 0.16 1.26 8.04 -2.91 -0.02 1.23 16 38 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.15 2.85 7.03 -2.91 -0.02 2.83 16 41 H 0.07 1.91 7.98 -2.39 -0.02 1.89 16 42 H 0.07 1.71 7.08 -2.39 -0.02 1.70 16 43 H 0.16 6.04 2.73 -8.70 -0.02 6.02 16 Total: -1.00 -64.62 349.03 3.31 -61.31 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.95 Total: 25.65 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 5.15 Total: -31.90 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -4.49 Total: -75.69 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.06 Total: -26.61 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.77 Total: 47.24 kcal Total: -64.62 3.31 -61.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335360560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.881 kcal (2) G-P(sol) polarization free energy of solvation -64.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds