Wall clock time and date at job start Tue Mar 31 2020 14:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86805 * 120.00102 * 2 1 4 4 H 1.48498 * 109.47347 * 86.88918 * 3 2 1 5 5 H 1.48500 * 109.47001 * 206.89277 * 3 2 1 6 6 H 1.48503 * 109.46988 * 326.89152 * 3 2 1 7 7 C 1.39941 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00121 * 19.80316 * 7 2 1 9 9 C 1.41431 * 119.99819 * 199.80529 * 7 2 1 10 10 C 1.40791 * 120.18090 * 31.94988 * 9 7 2 11 11 C 1.37708 * 120.03896 * 179.73255 * 10 9 7 12 12 C 1.38373 * 120.41528 * 0.52321 * 11 10 9 13 13 C 1.39882 * 120.35543 * 359.75248 * 12 11 10 14 14 C 1.47887 * 120.02181 * 179.97438 * 13 12 11 15 15 O 1.21544 * 120.00210 * 351.83023 * 14 13 12 16 16 N 1.34782 * 119.99394 * 171.82615 * 14 13 12 17 17 C 1.47016 * 125.65097 * 5.56206 * 16 14 13 18 18 C 1.54323 * 107.27166 * 181.02408 * 17 16 14 19 19 C 1.55157 * 102.94406 * 22.19357 * 18 17 16 20 20 H 1.08995 * 111.00683 * 82.57007 * 19 18 17 21 21 C 1.50699 * 111.00935 * 206.38933 * 19 18 17 22 22 C 1.38674 * 120.41645 * 239.72385 * 21 19 18 23 23 C 1.38628 * 118.41800 * 179.77924 * 22 21 19 24 24 C 1.38229 * 119.16163 * 0.51381 * 23 22 21 25 25 N 1.31855 * 120.76522 * 359.72347 * 24 23 22 26 26 C 1.31886 * 121.72107 * 359.97438 * 25 24 23 27 27 C 1.47425 * 125.64188 * 185.26020 * 16 14 13 28 28 C 1.39032 * 119.95021 * 359.97438 * 13 12 11 29 29 H 0.97003 * 119.99960 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.97580 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.79566 * 180.25337 * 11 10 9 32 32 H 1.08002 * 119.82388 * 179.73517 * 12 11 10 33 33 H 1.09000 * 109.88758 * 300.43943 * 17 16 14 34 34 H 1.09000 * 109.88143 * 61.45231 * 17 16 14 35 35 H 1.08997 * 110.72726 * 140.55878 * 18 17 16 36 36 H 1.09003 * 110.72025 * 263.65851 * 18 17 16 37 37 H 1.07998 * 120.79204 * 0.02562 * 22 21 19 38 38 H 1.08001 * 120.42022 * 180.21730 * 23 22 21 39 39 H 1.08001 * 119.61923 * 179.70608 * 24 23 22 40 40 H 1.08005 * 119.61237 * 180.02562 * 26 25 24 41 41 H 1.09003 * 110.36344 * 274.74151 * 27 16 14 42 42 H 1.08992 * 110.37513 * 37.06627 * 27 16 14 43 43 H 1.07998 * 120.20184 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4240 2.0845 1.3980 5 1 3.5711 1.4221 -0.6333 6 1 1.4741 2.6328 -0.7648 7 6 2.0080 -1.2119 -0.0005 8 1 1.5160 -2.1194 -0.3178 9 6 3.3595 -1.2482 0.4145 10 6 3.8204 -0.3584 1.4034 11 6 5.1357 -0.4000 1.8093 12 6 6.0152 -1.3059 1.2431 13 6 5.5768 -2.1938 0.2551 14 6 6.5232 -3.1586 -0.3454 15 8 7.7097 -3.0839 -0.0922 16 7 6.0700 -4.1207 -1.1734 17 6 4.6873 -4.2558 -1.6543 18 6 4.6348 -5.5103 -2.5516 19 6 5.8601 -6.3323 -2.0717 20 1 5.6179 -6.9101 -1.1798 21 6 6.3730 -7.2284 -3.1695 22 6 6.4128 -8.6032 -2.9925 23 6 6.8881 -9.3886 -4.0313 24 6 7.3136 -8.7789 -5.1965 25 7 7.2659 -7.4678 -5.3279 26 6 6.8144 -6.6901 -4.3631 27 6 6.8802 -5.2082 -1.7517 28 6 4.2507 -2.1687 -0.1619 29 1 -0.4850 0.8401 -0.0004 30 1 3.1409 0.3539 1.8474 31 1 5.4841 0.2816 2.5711 32 1 7.0458 -1.3274 1.5655 33 1 4.0106 -4.3767 -0.8084 34 1 4.4071 -3.3736 -2.2299 35 1 3.7106 -6.0640 -2.3869 36 1 4.7375 -5.2377 -3.6020 37 1 6.0777 -9.0517 -2.0689 38 1 6.9299 -10.4630 -3.9296 39 1 7.6897 -9.3833 -6.0087 40 1 6.7901 -5.6200 -4.5075 41 1 7.3738 -4.8701 -2.6628 42 1 7.6161 -5.5590 -1.0284 43 1 3.9080 -2.8521 -0.9247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335360561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:22 Heat of formation + Delta-G solvation = 41.039167 kcal Electronic energy + Delta-G solvation = -25944.461385 eV Core-core repulsion = 22340.748214 eV Total energy + Delta-G solvation = -3603.713171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79536 -39.78067 -37.72037 -36.99920 -33.74263 -33.59690 -32.33470 -30.67650 -30.48878 -30.16520 -28.20096 -25.27566 -24.82663 -23.93293 -23.23392 -21.86353 -21.01512 -20.41828 -19.41215 -17.64108 -17.49628 -16.76897 -16.22828 -15.92728 -15.82872 -15.21140 -14.88023 -14.71175 -14.16382 -14.05972 -13.79235 -13.58377 -13.49450 -13.32753 -13.10005 -12.80945 -12.65701 -12.41153 -12.20412 -11.97909 -11.73484 -11.57883 -11.34574 -11.02480 -10.90293 -10.65099 -10.43408 -10.05799 -10.04246 -9.69297 -9.62342 -9.46376 -9.20938 -9.04347 -8.46998 -7.92581 -7.72901 -7.02692 -4.58513 0.80702 1.00315 1.87983 2.49903 3.05370 3.14710 3.19442 3.23838 3.49296 3.56383 3.91638 4.12834 4.38028 4.41137 4.48036 4.48787 4.64121 4.69905 4.81175 4.97007 5.17631 5.21293 5.24768 5.29882 5.31954 5.50679 5.62919 5.75981 5.78622 5.82271 5.85628 5.91625 5.97890 6.11045 6.19235 6.37147 6.38965 6.43026 6.56250 6.73648 6.96603 7.19438 7.38430 7.48817 7.70760 7.71088 7.81225 7.89292 8.23764 8.48495 8.61633 8.70336 9.99819 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.002970 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.191907 B = 9424.614869 C =10318.396287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.087 3.913 3 Si 0.904 3.096 4 H -0.268 1.268 5 H -0.247 1.247 6 H -0.288 1.288 7 C -0.454 4.454 8 H 0.092 0.908 9 C 0.083 3.917 10 C -0.213 4.213 11 C -0.090 4.090 12 C -0.180 4.180 13 C -0.105 4.105 14 C 0.580 3.420 15 O -0.552 6.552 16 N -0.618 5.618 17 C 0.093 3.907 18 C -0.127 4.127 19 C -0.061 4.061 20 H 0.097 0.903 21 C -0.118 4.118 22 C -0.070 4.070 23 C -0.171 4.171 24 C 0.091 3.909 25 N -0.482 5.482 26 C 0.105 3.895 27 C 0.117 3.883 28 C -0.203 4.203 29 H 0.285 0.715 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 -14.437 -6.718 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.170 1.170 6 H -0.215 1.215 7 C -0.482 4.482 8 H 0.110 0.890 9 C 0.081 3.919 10 C -0.233 4.233 11 C -0.108 4.108 12 C -0.200 4.200 13 C -0.108 4.108 14 C 0.373 3.627 15 O -0.431 6.431 16 N -0.353 5.353 17 C -0.029 4.029 18 C -0.165 4.165 19 C -0.081 4.081 20 H 0.115 0.885 21 C -0.121 4.121 22 C -0.096 4.096 23 C -0.191 4.191 24 C -0.066 4.066 25 N -0.191 5.191 26 C -0.052 4.052 27 C -0.006 4.006 28 C -0.222 4.222 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.173 0.827 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.922 -13.854 -7.336 17.565 hybrid contribution -0.187 0.391 0.877 0.978 sum 7.735 -13.463 -6.460 16.817 Atomic orbital electron populations 1.69700 1.08055 1.30292 1.35043 1.26080 0.94623 1.01554 0.90907 0.86422 0.81221 0.80130 0.79261 1.19389 1.16975 1.21523 1.19380 0.93531 0.96349 1.38973 0.88999 1.17702 0.93126 0.90986 0.90137 1.21358 0.95834 1.04670 1.01397 1.20614 0.93725 0.97685 0.98795 1.20477 0.98885 0.99512 1.01138 1.19366 0.93630 0.97886 0.99898 1.18539 0.87897 0.79506 0.76740 1.90684 1.17179 1.73170 1.62029 1.48297 1.10446 1.28462 1.48062 1.22645 0.84060 0.97847 0.98344 1.22893 0.98006 0.95452 1.00149 1.21336 0.95669 0.94654 0.96392 0.88470 1.20638 1.00364 0.94497 0.96559 1.21535 0.96090 0.92936 0.99068 1.22146 1.00826 1.01332 0.94814 1.22789 0.96045 0.90986 0.96795 1.67730 1.13907 1.06048 1.31367 1.22700 0.93730 1.00236 0.88545 1.22246 0.93638 0.85909 0.98798 1.22565 0.91676 1.04760 1.03242 0.90416 0.87754 0.88097 0.87524 0.89360 0.89480 0.89433 0.90212 0.84704 0.84776 0.82872 0.82679 0.91392 0.90359 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.54 13.93 55.55 0.77 -19.77 16 2 C 0.09 2.18 5.37 -17.34 -0.09 2.08 16 3 Si 0.90 19.97 24.69 -169.99 -4.20 15.77 16 4 H -0.27 -5.77 6.63 56.52 0.37 -5.39 16 5 H -0.25 -5.63 7.08 56.52 0.40 -5.23 16 6 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.45 -11.41 9.54 -37.73 -0.36 -11.77 16 8 H 0.09 2.37 8.06 -52.49 -0.42 1.94 16 9 C 0.08 1.98 5.03 -106.87 -0.54 1.44 16 10 C -0.21 -4.93 7.33 -38.81 -0.28 -5.22 16 11 C -0.09 -1.92 10.01 -39.73 -0.40 -2.32 16 12 C -0.18 -3.90 9.60 -38.92 -0.37 -4.27 16 13 C -0.10 -2.24 5.87 -105.04 -0.62 -2.86 16 14 C 0.58 11.55 7.81 -12.31 -0.10 11.46 16 15 O -0.55 -12.30 16.66 5.33 0.09 -12.21 16 16 N -0.62 -9.68 3.32 -175.33 -0.58 -10.27 16 17 C 0.09 1.24 4.88 -3.07 -0.01 1.22 16 18 C -0.13 -1.24 6.36 -24.90 -0.16 -1.40 16 19 C -0.06 -0.58 3.29 -89.50 -0.29 -0.88 16 20 H 0.10 0.87 8.01 -51.93 -0.42 0.45 16 21 C -0.12 -1.09 5.01 -104.48 -0.52 -1.61 16 22 C -0.07 -0.56 9.83 -39.28 -0.39 -0.94 16 23 C -0.17 -1.25 10.11 -39.44 -0.40 -1.65 16 24 C 0.09 0.78 11.18 -17.54 -0.20 0.58 16 25 N -0.48 -5.32 10.36 -13.25 -0.14 -5.46 16 26 C 0.10 1.08 9.50 -17.55 -0.17 0.91 16 27 C 0.12 1.47 6.29 -2.41 -0.02 1.46 16 28 C -0.20 -4.34 8.34 -38.44 -0.32 -4.66 16 29 H 0.29 6.61 8.30 -40.82 -0.34 6.28 16 30 H 0.10 2.40 5.07 -52.49 -0.27 2.14 16 31 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 32 H 0.11 2.23 7.66 -52.49 -0.40 1.83 16 33 H 0.09 1.24 6.66 -51.93 -0.35 0.89 16 34 H 0.09 1.21 6.80 -51.93 -0.35 0.86 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.73 7.24 -51.93 -0.38 0.35 16 37 H 0.14 0.81 8.04 -52.49 -0.42 0.38 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.16 1.48 7.01 -52.48 -0.37 1.11 16 41 H 0.07 0.83 6.67 -51.93 -0.35 0.48 16 42 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 43 H 0.14 2.59 2.76 -57.49 -0.16 2.43 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -30.07 347.80 -9.20 -39.26 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.15 Total: 5.85 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -5.23 Total: -18.43 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.05 Total: -35.49 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.20 Total: 15.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.07 -9.20 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335360561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.304 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds