Wall clock time and date at job start Tue Mar 31 2020 14:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86805 * 120.00102 * 2 1 4 4 H 1.48498 * 109.47347 * 86.88918 * 3 2 1 5 5 H 1.48500 * 109.47001 * 206.89277 * 3 2 1 6 6 H 1.48503 * 109.46988 * 326.89152 * 3 2 1 7 7 C 1.39941 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00121 * 19.80316 * 7 2 1 9 9 C 1.41431 * 119.99819 * 199.80529 * 7 2 1 10 10 C 1.40791 * 120.18090 * 31.94988 * 9 7 2 11 11 C 1.37708 * 120.03896 * 179.73255 * 10 9 7 12 12 C 1.38373 * 120.41528 * 0.52321 * 11 10 9 13 13 C 1.39882 * 120.35543 * 359.75248 * 12 11 10 14 14 C 1.47887 * 120.02181 * 179.97438 * 13 12 11 15 15 O 1.21544 * 120.00210 * 351.83023 * 14 13 12 16 16 N 1.34782 * 119.99394 * 171.82615 * 14 13 12 17 17 C 1.47016 * 125.65097 * 5.56206 * 16 14 13 18 18 C 1.54323 * 107.27166 * 181.02408 * 17 16 14 19 19 C 1.55157 * 102.94406 * 22.19357 * 18 17 16 20 20 H 1.08995 * 111.00683 * 82.57007 * 19 18 17 21 21 C 1.50699 * 111.00935 * 206.38933 * 19 18 17 22 22 C 1.38674 * 120.41645 * 239.72385 * 21 19 18 23 23 C 1.38628 * 118.41800 * 179.77924 * 22 21 19 24 24 C 1.38229 * 119.16163 * 0.51381 * 23 22 21 25 25 N 1.31855 * 120.76522 * 359.72347 * 24 23 22 26 26 C 1.31886 * 121.72107 * 359.97438 * 25 24 23 27 27 C 1.47425 * 125.64188 * 185.26020 * 16 14 13 28 28 C 1.39032 * 119.95021 * 359.97438 * 13 12 11 29 29 H 0.97003 * 119.99960 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.97580 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.79566 * 180.25337 * 11 10 9 32 32 H 1.08002 * 119.82388 * 179.73517 * 12 11 10 33 33 H 1.09000 * 109.88758 * 300.43943 * 17 16 14 34 34 H 1.09000 * 109.88143 * 61.45231 * 17 16 14 35 35 H 1.08997 * 110.72726 * 140.55878 * 18 17 16 36 36 H 1.09003 * 110.72025 * 263.65851 * 18 17 16 37 37 H 1.07998 * 120.79204 * 0.02562 * 22 21 19 38 38 H 1.08001 * 120.42022 * 180.21730 * 23 22 21 39 39 H 1.08001 * 119.61923 * 179.70608 * 24 23 22 40 40 H 1.08005 * 119.61237 * 180.02562 * 26 25 24 41 41 H 1.09003 * 110.36344 * 274.74151 * 27 16 14 42 42 H 1.08992 * 110.37513 * 37.06627 * 27 16 14 43 43 H 1.07998 * 120.20184 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4240 2.0845 1.3980 5 1 3.5711 1.4221 -0.6333 6 1 1.4741 2.6328 -0.7648 7 6 2.0080 -1.2119 -0.0005 8 1 1.5160 -2.1194 -0.3178 9 6 3.3595 -1.2482 0.4145 10 6 3.8204 -0.3584 1.4034 11 6 5.1357 -0.4000 1.8093 12 6 6.0152 -1.3059 1.2431 13 6 5.5768 -2.1938 0.2551 14 6 6.5232 -3.1586 -0.3454 15 8 7.7097 -3.0839 -0.0922 16 7 6.0700 -4.1207 -1.1734 17 6 4.6873 -4.2558 -1.6543 18 6 4.6348 -5.5103 -2.5516 19 6 5.8601 -6.3323 -2.0717 20 1 5.6179 -6.9101 -1.1798 21 6 6.3730 -7.2284 -3.1695 22 6 6.4128 -8.6032 -2.9925 23 6 6.8881 -9.3886 -4.0313 24 6 7.3136 -8.7789 -5.1965 25 7 7.2659 -7.4678 -5.3279 26 6 6.8144 -6.6901 -4.3631 27 6 6.8802 -5.2082 -1.7517 28 6 4.2507 -2.1687 -0.1619 29 1 -0.4850 0.8401 -0.0004 30 1 3.1409 0.3539 1.8474 31 1 5.4841 0.2816 2.5711 32 1 7.0458 -1.3274 1.5655 33 1 4.0106 -4.3767 -0.8084 34 1 4.4071 -3.3736 -2.2299 35 1 3.7106 -6.0640 -2.3869 36 1 4.7375 -5.2377 -3.6020 37 1 6.0777 -9.0517 -2.0689 38 1 6.9299 -10.4630 -3.9296 39 1 7.6897 -9.3833 -6.0087 40 1 6.7901 -5.6200 -4.5075 41 1 7.3738 -4.8701 -2.6628 42 1 7.6161 -5.5590 -1.0284 43 1 3.9080 -2.8521 -0.9247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335360561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:22 Heat of formation + Delta-G solvation = 24.218251 kcal Electronic energy + Delta-G solvation = -25945.190795 eV Core-core repulsion = 22340.748214 eV Total energy + Delta-G solvation = -3604.442581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74941 -40.92324 -39.20042 -38.45252 -35.50129 -34.67094 -33.05920 -32.39300 -31.97680 -31.20821 -29.28589 -27.08265 -26.03457 -24.68940 -24.12622 -23.32446 -22.48456 -21.41529 -20.97476 -19.21143 -18.23194 -17.85435 -17.60673 -17.43195 -16.86887 -16.67851 -16.41600 -15.78232 -15.43377 -15.20596 -14.95218 -14.69023 -14.64578 -14.46070 -14.33188 -14.02051 -13.90775 -13.82200 -13.53277 -13.42137 -13.09715 -12.80735 -12.57609 -12.53681 -12.30003 -12.02940 -11.81619 -11.76976 -11.27549 -11.17840 -10.80092 -10.67055 -10.35618 -9.86166 -9.82592 -9.63654 -9.49439 -8.89294 -6.49269 0.14599 0.18205 0.37789 0.73545 1.27959 1.39728 1.46780 1.88847 1.92080 2.12600 2.65429 2.82876 3.38520 3.43613 3.47517 3.57935 3.74188 3.88289 4.01755 4.06474 4.14797 4.18822 4.23933 4.29160 4.40959 4.49099 4.58309 4.61404 4.65774 4.76145 4.84897 4.87053 4.90287 4.91638 5.01255 5.11225 5.16823 5.22710 5.28059 5.39488 5.49787 5.65541 5.76417 5.80523 5.87803 6.10032 6.34516 6.37515 6.65838 6.82471 7.05702 7.08499 8.18251 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.002970 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.191907 B = 9424.614869 C =10318.396287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.057 3.943 3 Si 0.948 3.052 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.276 1.276 7 C -0.478 4.478 8 H 0.072 0.928 9 C 0.066 3.934 10 C -0.227 4.227 11 C -0.090 4.090 12 C -0.182 4.182 13 C -0.115 4.115 14 C 0.575 3.425 15 O -0.583 6.583 16 N -0.611 5.611 17 C 0.086 3.914 18 C -0.116 4.116 19 C -0.043 4.043 20 H 0.110 0.890 21 C -0.123 4.123 22 C -0.071 4.071 23 C -0.165 4.165 24 C 0.080 3.920 25 N -0.515 5.515 26 C 0.089 3.911 27 C 0.112 3.888 28 C -0.200 4.200 29 H 0.293 0.707 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.175 0.825 40 H 0.152 0.848 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.039 -16.089 -6.976 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.159 4.159 3 Si 0.772 3.228 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.203 1.203 7 C -0.507 4.507 8 H 0.090 0.910 9 C 0.063 3.937 10 C -0.246 4.246 11 C -0.108 4.108 12 C -0.202 4.202 13 C -0.118 4.118 14 C 0.367 3.633 15 O -0.465 6.465 16 N -0.343 5.343 17 C -0.036 4.036 18 C -0.153 4.153 19 C -0.063 4.063 20 H 0.129 0.871 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.185 4.185 24 C -0.077 4.077 25 N -0.223 5.223 26 C -0.068 4.068 27 C -0.010 4.010 28 C -0.218 4.218 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.176 0.824 38 H 0.183 0.817 39 H 0.192 0.808 40 H 0.169 0.831 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.680 -15.532 -7.614 19.354 hybrid contribution -0.289 0.735 0.924 1.215 sum 8.392 -14.797 -6.690 18.279 Atomic orbital electron populations 1.69716 1.08918 1.31360 1.36813 1.26608 0.95100 1.03581 0.90570 0.85736 0.79573 0.77743 0.79715 1.18296 1.18379 1.20251 1.19382 0.94432 0.96115 1.40788 0.90983 1.17880 0.93022 0.92057 0.90692 1.21490 0.96715 1.04819 1.01590 1.20911 0.92891 0.97882 0.99099 1.20770 0.99362 0.99220 1.00818 1.19658 0.93942 0.98294 0.99922 1.18326 0.87184 0.80217 0.77559 1.90660 1.18028 1.74233 1.63553 1.48301 1.11914 1.27750 1.46347 1.22729 0.82539 0.99606 0.98698 1.22860 0.99113 0.93680 0.99671 1.21209 0.94223 0.93719 0.97141 0.87134 1.20534 1.01053 0.95126 0.95856 1.21876 0.95325 0.92363 1.00161 1.22486 0.99284 1.02873 0.93827 1.23269 0.95766 0.90474 0.98145 1.67707 1.15071 1.07411 1.32156 1.22731 0.94594 1.00305 0.89157 1.22461 0.94169 0.85957 0.98447 1.22902 0.91446 1.04247 1.03221 0.89622 0.87828 0.84984 0.86779 0.89927 0.90172 0.87356 0.89384 0.82386 0.81719 0.80770 0.83064 0.90996 0.91089 0.82029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.56 13.93 21.83 0.30 -43.26 16 2 C 0.06 2.88 5.37 85.26 0.46 3.33 16 3 Si 0.95 40.91 24.69 68.60 1.69 42.60 16 4 H -0.26 -10.59 6.63 99.48 0.66 -9.93 16 5 H -0.26 -11.65 7.08 99.48 0.70 -10.95 16 6 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.48 -24.57 9.54 23.47 0.22 -24.35 16 8 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 9 C 0.07 3.15 5.03 -21.32 -0.11 3.05 16 10 C -0.23 -10.36 7.33 22.77 0.17 -10.20 16 11 C -0.09 -3.71 10.01 22.18 0.22 -3.49 16 12 C -0.18 -7.69 9.60 22.70 0.22 -7.47 16 13 C -0.12 -4.87 5.87 -20.13 -0.12 -4.99 16 14 C 0.58 22.70 7.81 86.80 0.68 23.38 16 15 O -0.58 -25.91 16.66 -3.86 -0.06 -25.97 16 16 N -0.61 -18.67 3.32 -826.91 -2.75 -21.42 16 17 C 0.09 2.19 4.88 86.73 0.42 2.61 16 18 C -0.12 -2.00 6.36 31.78 0.20 -1.80 16 19 C -0.04 -0.73 3.29 -10.07 -0.03 -0.77 16 20 H 0.11 1.63 8.01 -2.39 -0.02 1.61 16 21 C -0.12 -2.00 5.01 -19.77 -0.10 -2.10 16 22 C -0.07 -0.90 9.83 22.47 0.22 -0.68 16 23 C -0.17 -1.87 10.11 22.36 0.23 -1.64 16 24 C 0.08 1.20 11.18 84.69 0.95 2.14 16 25 N -0.51 -10.75 10.36 -195.84 -2.03 -12.78 16 26 C 0.09 1.72 9.50 84.67 0.80 2.52 16 27 C 0.11 2.68 6.29 86.93 0.55 3.23 16 28 C -0.20 -8.51 8.34 23.01 0.19 -8.32 16 29 H 0.29 13.72 8.30 -92.71 -0.77 12.96 16 30 H 0.10 4.70 5.07 -2.91 -0.01 4.69 16 31 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 32 H 0.11 4.64 7.66 -2.91 -0.02 4.62 16 33 H 0.08 2.24 6.66 -2.39 -0.02 2.22 16 34 H 0.08 2.19 6.80 -2.39 -0.02 2.17 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.43 7.24 -2.39 -0.02 1.41 16 37 H 0.16 1.22 8.04 -2.91 -0.02 1.20 16 38 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.15 2.84 7.01 -2.91 -0.02 2.82 16 41 H 0.07 1.70 6.67 -2.39 -0.02 1.68 16 42 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 43 H 0.16 6.02 2.76 -7.61 -0.02 6.00 16 Total: -1.00 -65.62 347.80 3.31 -62.31 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.98 Total: 24.06 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 5.17 Total: -25.54 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -4.47 Total: -77.45 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.06 Total: -25.97 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.69 Total: 42.60 kcal Total: -65.62 3.31 -62.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335360561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.526 kcal (2) G-P(sol) polarization free energy of solvation -65.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds