Wall clock time and date at job start Tue Mar 31 2020 13:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99747 * 2 1 4 4 H 1.48496 * 109.46997 * 274.99574 * 3 2 1 5 5 H 1.48495 * 109.47363 * 34.99872 * 3 2 1 6 6 H 1.48501 * 109.46780 * 155.00123 * 3 2 1 7 7 C 1.37880 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00110 * 175.13468 * 7 2 1 9 9 C 1.50703 * 119.99726 * 355.13683 * 7 2 1 10 10 C 1.53040 * 109.45735 * 185.41587 * 9 7 2 11 11 C 1.53187 * 109.31167 * 178.62590 * 10 9 7 12 12 N 1.46923 * 108.77567 * 54.63733 * 11 10 9 13 13 C 1.34781 * 120.63296 * 126.36501 * 12 11 10 14 14 O 1.21582 * 120.00168 * 185.27776 * 13 12 11 15 15 N 1.34778 * 119.99590 * 5.27983 * 13 12 11 16 16 C 1.46508 * 119.99538 * 175.01942 * 15 13 12 17 17 C 1.50701 * 109.46653 * 179.97438 * 16 15 13 18 18 C 1.38265 * 119.93722 * 270.02282 * 17 16 15 19 19 C 1.38180 * 120.09184 * 179.72599 * 18 17 16 20 20 C 1.38661 * 119.97118 * 0.53140 * 19 18 17 21 21 O 1.35950 * 120.06244 * 179.74828 * 20 19 18 22 22 C 1.38906 * 119.87248 * 359.46453 * 20 19 18 23 23 F 1.35100 * 120.04401 * 180.27505 * 22 20 19 24 24 C 1.38257 * 119.93763 * 90.00172 * 17 16 15 25 25 C 1.46929 * 118.73881 * 306.64486 * 12 11 10 26 26 C 1.52758 * 109.00982 * 53.30597 * 25 12 11 27 27 H 0.96996 * 120.00033 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46124 * 305.38962 * 9 7 2 29 29 H 1.09002 * 109.49630 * 58.68252 * 10 9 7 30 30 H 1.08993 * 109.52778 * 298.59953 * 10 9 7 31 31 H 1.09005 * 109.59189 * 294.85212 * 11 10 9 32 32 H 1.09005 * 109.70551 * 174.49231 * 11 10 9 33 33 H 0.96998 * 120.00537 * 355.01957 * 15 13 12 34 34 H 1.09001 * 109.47056 * 60.00074 * 16 15 13 35 35 H 1.09001 * 109.46993 * 299.99740 * 16 15 13 36 36 H 1.07997 * 119.94843 * 359.97438 * 18 17 16 37 37 H 1.08002 * 120.01311 * 180.25258 * 19 18 17 38 38 H 0.96699 * 114.00239 * 269.72135 * 21 20 19 39 39 H 1.08005 * 119.98457 * 0.02562 * 24 17 16 40 40 H 1.09003 * 109.58925 * 173.14538 * 25 12 11 41 41 H 1.09003 * 109.58143 * 293.56444 * 25 12 11 42 42 H 1.08992 * 109.56599 * 185.55511 * 26 25 12 43 43 H 1.08996 * 109.35775 * 65.49672 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1074 -1.3947 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4120 0.5917 7 6 2.0046 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0788 9 6 1.2551 -2.4968 0.1118 10 6 2.2534 -3.6512 0.2245 11 6 1.4882 -4.9701 0.3719 12 7 0.5436 -5.0963 -0.7464 13 6 0.5441 -6.1965 -1.5249 14 8 -0.1749 -6.2487 -2.5039 15 7 1.3417 -7.2387 -1.2181 16 6 1.2633 -8.4757 -1.9992 17 6 2.2516 -9.4757 -1.4566 18 6 3.5401 -9.5134 -1.9566 19 6 4.4506 -10.4252 -1.4574 20 6 4.0686 -11.3112 -0.4615 21 8 4.9614 -12.2124 0.0274 22 6 2.7738 -11.2721 0.0400 23 9 2.3996 -12.1299 1.0142 24 6 1.8682 -10.3534 -0.4595 25 6 -0.3974 -3.9976 -1.0037 26 6 0.3852 -2.6920 -1.1321 27 1 -0.4850 0.8400 -0.0004 28 1 0.6215 -2.4766 0.9985 29 1 2.8880 -3.4994 1.0976 30 1 2.8714 -3.6874 -0.6725 31 1 0.9408 -4.9717 1.3145 32 1 2.1885 -5.8052 0.3546 33 1 1.9675 -7.1699 -0.4802 34 1 1.4982 -8.2625 -3.0420 35 1 0.2558 -8.8859 -1.9301 36 1 3.8365 -8.8266 -2.7355 37 1 5.4579 -10.4508 -1.8460 38 1 4.9651 -13.0572 -0.4431 39 1 0.8611 -10.3220 -0.0706 40 1 -0.9393 -4.1898 -1.9297 41 1 -1.1017 -3.9183 -0.1755 42 1 -0.3097 -1.8575 -1.2247 43 1 1.0204 -2.7370 -2.0168 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336330035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:42 Heat of formation + Delta-G solvation = -113.433887 kcal Electronic energy + Delta-G solvation = -26601.189592 eV Core-core repulsion = 22560.008741 eV Total energy + Delta-G solvation = -4041.180850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.95356 -41.45301 -40.58942 -38.68379 -38.04846 -35.71547 -35.26211 -32.97194 -32.09284 -31.72872 -31.00632 -28.10848 -26.70343 -24.67737 -24.03389 -23.83102 -22.70120 -21.74572 -20.46461 -19.65082 -19.25638 -18.35779 -17.94217 -17.78737 -17.28150 -16.99827 -16.54674 -16.52780 -16.15064 -15.57048 -15.29092 -15.14038 -14.96191 -14.90157 -14.61066 -14.46001 -14.31331 -14.02795 -13.67819 -13.40694 -13.08557 -13.01716 -12.92445 -12.81519 -12.64094 -12.46310 -12.15423 -11.92636 -11.63787 -11.39657 -11.34422 -10.94002 -10.78640 -10.39772 -10.22346 -10.01093 -9.66141 -9.37461 -8.07160 -6.19671 -0.13609 0.08842 1.41723 1.43900 1.53263 1.71504 2.15442 2.40693 2.45172 2.90955 3.05581 3.20460 3.26982 3.52172 3.74328 4.08593 4.13645 4.16741 4.26007 4.34308 4.45335 4.50785 4.61541 4.64490 4.74888 4.78268 4.90951 4.92236 4.99013 4.99448 5.12449 5.21392 5.24824 5.40671 5.44795 5.48078 5.51601 5.66840 5.68231 5.99368 6.06468 6.12424 6.40200 6.68811 6.92359 6.99746 7.48242 7.56407 8.97322 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.002423 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.680029 B =11551.598250 C =12118.321815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.045 3.955 10 C -0.116 4.116 11 C 0.118 3.882 12 N -0.621 5.621 13 C 0.704 3.296 14 O -0.636 6.636 15 N -0.732 5.732 16 C 0.182 3.818 17 C -0.086 4.086 18 C -0.085 4.085 19 C -0.114 4.114 20 C 0.080 3.920 21 O -0.502 6.502 22 C 0.049 3.951 23 F -0.145 7.145 24 C -0.118 4.118 25 C 0.139 3.861 26 C -0.110 4.110 27 H 0.260 0.740 28 H 0.006 0.994 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.407 0.593 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.414 0.586 39 H 0.147 0.853 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 -24.668 -1.589 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.154 4.154 11 C -0.004 4.004 12 N -0.357 5.357 13 C 0.406 3.594 14 O -0.518 6.518 15 N -0.391 5.391 16 C 0.059 3.941 17 C -0.086 4.086 18 C -0.103 4.103 19 C -0.133 4.133 20 C 0.034 3.966 21 O -0.315 6.315 22 C 0.029 3.971 23 F -0.123 7.123 24 C -0.137 4.137 25 C 0.016 3.984 26 C -0.149 4.149 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.245 0.755 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.172 0.828 37 H 0.181 0.819 38 H 0.273 0.727 39 H 0.165 0.835 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.614 -24.210 -1.834 25.445 hybrid contribution 0.182 0.745 0.240 0.804 sum 7.797 -23.464 -1.594 24.777 Atomic orbital electron populations 1.70005 1.07079 1.27081 1.51365 1.25714 0.95628 1.02260 0.95024 0.85678 0.79019 0.79949 0.77806 1.20738 1.21011 1.19132 1.21572 0.93277 0.92205 1.49871 0.92984 1.18612 0.93131 0.92444 0.93149 1.21865 0.98137 0.94254 1.01151 1.21792 0.91440 0.98397 0.88806 1.47384 1.38546 1.17375 1.32430 1.15959 0.80821 0.80564 0.82099 1.90848 1.47991 1.82814 1.30152 1.45195 1.42812 1.13139 1.37976 1.20013 0.97973 0.81005 0.95125 1.19602 0.95299 0.96836 0.96900 1.21336 0.91505 0.97864 0.99626 1.21562 1.01740 0.95077 0.94891 1.18663 0.86786 0.95227 0.95901 1.84823 1.57983 1.28513 1.60204 1.18293 0.93779 0.93369 0.91617 1.91479 1.91891 1.68576 1.60402 1.21118 1.00458 0.94831 0.97296 1.21328 0.90868 0.85552 1.00673 1.21694 0.99185 0.95300 0.98677 0.93093 0.97623 0.90918 0.93498 0.90796 0.88273 0.75467 0.90287 0.90774 0.82823 0.81896 0.72666 0.83523 0.91285 0.92175 0.91486 0.95891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.04 11.53 21.45 0.25 -51.80 16 2 C 0.01 0.68 5.36 84.66 0.45 1.13 16 3 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.53 -28.33 8.49 25.60 0.22 -28.11 16 8 H 0.05 2.73 7.75 -2.91 -0.02 2.71 16 9 C 0.05 2.14 2.01 -11.51 -0.02 2.12 16 10 C -0.12 -4.24 5.30 30.67 0.16 -4.08 16 11 C 0.12 3.43 6.39 86.36 0.55 3.98 16 12 N -0.62 -21.35 2.98 -837.73 -2.50 -23.85 16 13 C 0.70 23.38 8.30 179.05 1.49 24.86 16 14 O -0.64 -25.93 15.77 -3.97 -0.06 -26.00 16 15 N -0.73 -16.90 5.46 -482.27 -2.63 -19.54 16 16 C 0.18 3.40 5.80 85.63 0.50 3.90 16 17 C -0.09 -1.23 5.25 -19.85 -0.10 -1.34 16 18 C -0.08 -0.99 9.69 22.26 0.22 -0.78 16 19 C -0.11 -1.27 9.98 22.36 0.22 -1.05 16 20 C 0.08 1.17 6.71 22.53 0.15 1.32 16 21 O -0.50 -6.64 13.37 -92.99 -1.24 -7.88 16 22 C 0.05 0.84 7.31 22.45 0.16 1.00 16 23 F -0.14 -2.94 17.11 44.97 0.77 -2.17 16 24 C -0.12 -1.81 9.67 22.30 0.22 -1.59 16 25 C 0.14 5.59 6.41 86.22 0.55 6.14 16 26 C -0.11 -5.16 5.18 30.53 0.16 -5.00 16 27 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.10 2.10 5.64 -2.38 -0.01 2.08 16 33 H 0.41 7.70 5.95 -92.71 -0.55 7.14 16 34 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 35 H 0.07 1.44 8.08 -2.39 -0.02 1.42 16 36 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 38 H 0.41 1.38 9.06 -74.06 -0.67 0.71 16 39 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.07 2.88 7.00 -2.39 -0.02 2.86 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.07 3.58 6.29 -2.39 -0.02 3.56 16 43 H 0.02 1.10 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -70.17 358.14 1.37 -68.81 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -0.17 Total: 14.87 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 4.92 Total: 2.50 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -4.88 Total: -95.18 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.31 Total: -33.88 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.77 Total: -2.17 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -70.17 1.37 -68.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336330035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.627 kcal (2) G-P(sol) polarization free energy of solvation -70.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds