Wall clock time and date at job start Tue Mar 31 2020 13:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86800 * 120.00325 * 2 1 4 4 H 1.48500 * 109.46972 * 269.99729 * 3 2 1 5 5 H 1.48506 * 109.47021 * 29.99795 * 3 2 1 6 6 H 1.48502 * 109.47122 * 149.99327 * 3 2 1 7 7 C 1.40231 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99961 * 195.51384 * 7 2 1 9 9 C 1.41088 * 120.00346 * 15.51195 * 7 2 1 10 10 C 1.40900 * 120.10590 * 204.71234 * 9 7 2 11 11 C 1.36304 * 119.89064 * 180.02562 * 10 9 7 12 12 C 1.40031 * 120.10909 * 0.27352 * 11 10 9 13 13 C 1.47599 * 119.89734 * 179.69856 * 12 11 10 14 14 O 1.21595 * 119.99748 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99775 * 180.02562 * 13 12 11 16 16 C 1.39832 * 119.99513 * 184.60108 * 15 13 12 17 17 C 1.38939 * 120.65769 * 145.31356 * 16 15 13 18 18 N 1.31427 * 120.49979 * 179.79653 * 17 16 15 19 19 C 1.32727 * 122.51041 * 0.66200 * 18 17 16 20 20 C 1.37675 * 120.21967 * 359.45669 * 19 18 17 21 21 C 1.39042 * 120.66011 * 325.58036 * 16 15 13 22 22 C 1.50514 * 122.84014 * 180.45303 * 20 19 18 23 23 C 1.52766 * 110.56902 * 342.48706 * 22 20 19 24 24 C 1.53323 * 108.35081 * 50.84052 * 23 22 20 25 25 C 1.50751 * 117.47585 * 179.28821 * 19 18 17 26 26 C 1.40037 * 120.20476 * 359.44823 * 12 11 10 27 27 C 1.36303 * 120.10626 * 0.55344 * 26 12 11 28 28 H 0.97009 * 119.99821 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.04987 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.94282 * 179.97438 * 11 10 9 31 31 H 0.97000 * 119.99763 * 4.59996 * 15 13 12 32 32 H 1.08001 * 119.74973 * 0.07064 * 17 16 15 33 33 H 1.08007 * 120.58303 * 359.93564 * 21 16 15 34 34 H 1.09004 * 109.25158 * 102.76503 * 22 20 19 35 35 H 1.08996 * 109.25698 * 222.20071 * 22 20 19 36 36 H 1.08991 * 109.68530 * 170.55996 * 23 22 20 37 37 H 1.09005 * 109.68173 * 291.13103 * 23 22 20 38 38 H 1.09003 * 109.64191 * 49.79628 * 24 23 22 39 39 H 1.08994 * 109.64271 * 170.42744 * 24 23 22 40 40 H 1.09003 * 109.25400 * 41.98708 * 25 19 18 41 41 H 1.09003 * 109.23066 * 282.53187 * 25 19 18 42 42 H 1.07999 * 119.94793 * 180.25341 * 26 12 11 43 43 H 1.07995 * 120.05527 * 179.70310 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5380 1.4401 0.7002 7 6 2.0075 -1.2145 0.0005 8 1 3.0580 -1.2314 0.2507 9 6 1.3406 -2.4142 -0.3257 10 6 1.8300 -3.6468 0.1503 11 6 1.1826 -4.8033 -0.1680 12 6 0.0362 -4.7683 -0.9713 13 6 -0.6574 -6.0241 -1.3186 14 8 -0.2333 -7.0867 -0.9068 15 7 -1.7607 -5.9928 -2.0921 16 6 -2.4728 -7.1700 -2.3420 17 6 -3.8563 -7.1479 -2.4680 18 7 -4.5222 -8.2555 -2.7068 19 6 -3.9253 -9.4351 -2.8256 20 6 -2.5570 -9.5341 -2.7104 21 6 -1.8110 -8.3867 -2.4638 22 6 -1.8189 -10.8389 -2.8447 23 6 -2.7778 -12.0171 -2.6836 24 6 -3.9718 -11.7993 -3.6206 25 6 -4.8010 -10.6348 -3.0834 26 6 -0.4573 -3.5452 -1.4419 27 6 0.1834 -2.3835 -1.1290 28 1 -0.4850 0.8401 -0.0004 29 1 2.7166 -3.6751 0.7663 30 1 1.5572 -5.7486 0.1961 31 1 -2.0606 -5.1538 -2.4754 32 1 -4.3882 -6.2127 -2.3733 33 1 -0.7365 -8.4399 -2.3681 34 1 -1.3512 -10.8878 -3.8281 35 1 -1.0471 -10.8959 -2.0771 36 1 -2.2684 -12.9438 -2.9473 37 1 -3.1255 -12.0691 -1.6518 38 1 -3.6130 -11.5622 -4.6222 39 1 -4.5830 -12.7012 -3.6510 40 1 -5.5659 -10.3712 -3.8139 41 1 -5.2816 -10.9352 -2.1523 42 1 -1.3441 -3.5227 -2.0579 43 1 -0.1952 -1.4412 -1.4963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336376780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:09 Heat of formation + Delta-G solvation = -17.301995 kcal Electronic energy + Delta-G solvation = -25361.941078 eV Core-core repulsion = 21755.698045 eV Total energy + Delta-G solvation = -3606.243034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03871 -40.71100 -39.06212 -37.60952 -35.83986 -35.73031 -33.80450 -32.19404 -31.34976 -30.99702 -29.99187 -27.71312 -25.54981 -24.51942 -23.59696 -23.40046 -22.80456 -21.49165 -20.64366 -19.42949 -19.12720 -17.79857 -17.41630 -17.26941 -17.14061 -16.21444 -15.82544 -15.78120 -15.57081 -15.20564 -15.00569 -14.80845 -14.57217 -14.44363 -14.07268 -13.97074 -13.72783 -13.67197 -13.43441 -13.25445 -12.87851 -12.84483 -12.66007 -12.41501 -11.95049 -11.80518 -11.75704 -11.63607 -11.46164 -11.38509 -11.19214 -11.00057 -10.43284 -10.17026 -9.64031 -9.51770 -9.14397 -8.81526 -6.53255 -0.05076 0.20778 0.44320 1.12279 1.38114 1.41883 1.52816 1.99988 2.07819 2.15106 2.66178 2.79219 3.32255 3.63708 3.66167 3.82881 3.87902 3.93204 4.03705 4.13513 4.24635 4.28448 4.40187 4.50008 4.54851 4.63606 4.68366 4.82420 4.89601 4.97366 4.99954 5.02489 5.08596 5.11645 5.13841 5.24542 5.26689 5.32511 5.45294 5.47119 5.54574 5.74805 5.81490 5.89651 5.95675 6.18187 6.45118 6.50846 6.73034 6.84034 6.93962 7.21229 8.12079 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.035716 B = 0.002276 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.780836 B =12300.281821 C =12937.638679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.087 0.913 9 C 0.101 3.899 10 C -0.252 4.252 11 C -0.028 4.028 12 C -0.295 4.295 13 C 0.573 3.427 14 O -0.582 6.582 15 N -0.662 5.662 16 C 0.088 3.912 17 C 0.074 3.926 18 N -0.483 5.483 19 C 0.097 3.903 20 C -0.110 4.110 21 C -0.104 4.104 22 C -0.078 4.078 23 C -0.117 4.117 24 C -0.113 4.113 25 C -0.062 4.062 26 C -0.053 4.053 27 C -0.197 4.197 28 H 0.298 0.702 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.422 0.578 32 H 0.178 0.822 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 -13.105 -7.728 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.105 0.895 9 C 0.098 3.902 10 C -0.272 4.272 11 C -0.047 4.047 12 C -0.300 4.300 13 C 0.370 3.630 14 O -0.464 6.464 15 N -0.308 5.308 16 C -0.009 4.009 17 C -0.088 4.088 18 N -0.192 5.192 19 C -0.039 4.039 20 C -0.113 4.113 21 C -0.132 4.132 22 C -0.116 4.116 23 C -0.154 4.154 24 C -0.151 4.151 25 C -0.100 4.100 26 C -0.072 4.072 27 C -0.216 4.216 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.261 0.739 32 H 0.195 0.805 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.143 0.857 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.571 -13.595 -7.486 17.729 hybrid contribution 1.363 1.551 0.342 2.093 sum -7.209 -12.044 -7.144 15.750 Atomic orbital electron populations 1.69744 1.09186 1.31702 1.31278 1.26960 0.95629 1.04910 0.90866 0.85072 0.79042 0.75095 0.79861 1.18270 1.18956 1.18110 1.20171 0.98052 0.91856 1.39157 0.89503 1.18187 0.91553 0.92942 0.87557 1.20863 1.04633 0.92780 1.08890 1.20494 0.93214 0.97108 0.93914 1.18982 1.03686 0.91485 1.15824 1.18577 0.79133 0.89168 0.76158 1.90614 1.66695 1.32842 1.56272 1.43220 1.27281 1.09855 1.50396 1.19003 0.92840 0.87820 1.01211 1.22797 0.88672 0.98157 0.99147 1.67542 1.40533 0.98575 1.12532 1.21524 0.91265 0.93753 0.97380 1.20682 0.94219 0.96531 0.99840 1.21842 1.01325 0.91907 0.98102 1.20508 0.97871 0.90178 1.03031 1.21586 0.96157 0.97363 1.00306 1.21581 0.96699 0.97822 0.99004 1.20405 0.96687 0.90182 1.02709 1.20748 0.97840 0.91473 0.97151 1.21094 0.99844 0.97532 1.03162 0.89071 0.87607 0.87736 0.73860 0.80466 0.85137 0.89372 0.91087 0.88992 0.91897 0.91359 0.88493 0.89413 0.89577 0.85681 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.02 10.82 21.87 0.24 -36.78 16 2 C 0.04 1.61 5.19 85.35 0.44 2.05 16 3 Si 0.99 33.87 29.59 68.60 2.03 35.90 16 4 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 5 H -0.27 -8.62 7.11 99.48 0.71 -7.92 16 6 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 7 C -0.47 -22.86 9.06 23.45 0.21 -22.64 16 8 H 0.09 4.09 7.90 -2.91 -0.02 4.06 16 9 C 0.10 5.11 5.58 -21.27 -0.12 4.99 16 10 C -0.25 -12.17 9.73 22.47 0.22 -11.96 16 11 C -0.03 -1.31 9.52 22.25 0.21 -1.10 16 12 C -0.30 -13.05 5.89 -19.94 -0.12 -13.16 16 13 C 0.57 23.63 7.62 86.71 0.66 24.30 16 14 O -0.58 -26.66 13.77 -4.02 -0.06 -26.71 16 15 N -0.66 -21.92 5.29 -306.15 -1.62 -23.54 16 16 C 0.09 2.83 6.33 38.23 0.24 3.08 16 17 C 0.07 2.10 11.14 84.92 0.95 3.04 16 18 N -0.48 -13.72 10.17 -183.41 -1.87 -15.59 16 19 C 0.10 2.48 6.62 42.31 0.28 2.76 16 20 C -0.11 -2.97 5.74 -19.86 -0.11 -3.08 16 21 C -0.10 -3.38 8.40 22.66 0.19 -3.19 16 22 C -0.08 -1.58 5.68 29.71 0.17 -1.41 16 23 C -0.12 -1.68 5.98 30.62 0.18 -1.49 16 24 C -0.11 -1.45 5.97 30.61 0.18 -1.27 16 25 C -0.06 -1.10 5.91 29.77 0.18 -0.92 16 26 C -0.05 -2.25 9.47 22.25 0.21 -2.04 16 27 C -0.20 -9.45 8.63 22.47 0.19 -9.26 16 28 H 0.30 12.30 8.29 -92.70 -0.77 11.53 16 29 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.10 4.71 7.63 -2.91 -0.02 4.69 16 31 H 0.42 11.61 6.84 -92.71 -0.63 10.97 16 32 H 0.18 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.13 4.76 6.27 -2.91 -0.02 4.74 16 34 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.97 8.10 -2.38 -0.02 0.95 16 38 H 0.07 0.88 8.10 -2.39 -0.02 0.86 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.13 4.23 6.38 -2.91 -0.02 4.22 16 43 H 0.12 5.74 6.07 -2.91 -0.02 5.73 16 Total: -1.00 -61.00 353.97 3.31 -57.69 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: 0.42 Total: 40.34 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 4.17 Total: -31.30 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -3.25 Total: -75.91 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.06 Total: -26.71 kcal Atomic # 14 Polarization: 33.87 SS G_CDS: 2.03 Total: 35.90 kcal Total: -61.00 3.31 -57.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336376780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.386 kcal (2) G-P(sol) polarization free energy of solvation -60.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds