Wall clock time and date at job start Tue Mar 31 2020 13:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99931 * 2 1 4 4 H 1.48502 * 109.46962 * 269.99728 * 3 2 1 5 5 H 1.48498 * 109.47270 * 30.00251 * 3 2 1 6 6 H 1.48501 * 109.46786 * 149.99815 * 3 2 1 7 7 C 1.37876 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00125 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99944 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99603 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00547 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99451 * 179.97438 * 11 10 9 14 14 C 1.46914 * 127.08854 * 359.97438 * 13 11 10 15 15 C 1.50591 * 107.26131 * 179.97438 * 14 13 11 16 16 C 1.32267 * 109.82692 * 359.97438 * 15 14 13 17 17 C 1.47496 * 125.08926 * 179.97438 * 16 15 14 18 18 C 1.38608 * 120.36726 * 105.04870 * 17 16 15 19 19 C 1.38965 * 120.65529 * 179.97438 * 18 17 16 20 20 C 1.36249 * 121.16969 * 0.07097 * 19 18 17 21 21 C 1.40555 * 120.10933 * 359.95271 * 20 19 18 22 22 C 1.40583 * 121.17218 * 180.02562 * 21 20 19 23 23 C 1.36124 * 119.65074 * 179.85865 * 22 21 20 24 24 C 1.39314 * 120.96013 * 0.14514 * 23 22 21 25 25 C 1.36229 * 120.93529 * 359.90071 * 24 23 22 26 26 C 1.40184 * 119.68459 * 0.02562 * 25 24 23 27 27 C 1.46912 * 127.08290 * 180.29172 * 13 11 10 28 28 H 0.97003 * 119.99433 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47066 * 59.99371 * 9 7 2 30 30 H 1.09001 * 109.46551 * 299.99825 * 9 7 2 31 31 H 0.97001 * 120.00104 * 359.97438 * 10 9 7 32 32 H 1.09004 * 109.88249 * 60.58944 * 14 13 11 33 33 H 1.08991 * 110.01191 * 299.48581 * 14 13 11 34 34 H 1.07999 * 125.08565 * 179.97438 * 15 14 13 35 35 H 1.07993 * 119.67473 * 0.02562 * 18 17 16 36 36 H 1.07997 * 119.41213 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.94386 * 180.22220 * 20 19 18 38 38 H 1.07997 * 120.17268 * 359.95791 * 22 21 20 39 39 H 1.08006 * 119.52051 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.53091 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.15907 * 180.02562 * 25 24 23 42 42 H 1.09007 * 110.02787 * 60.65360 * 27 13 11 43 43 H 1.09003 * 109.74646 * 299.48793 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5583 -5.1055 0.0000 13 7 2.6296 -5.9078 -0.0005 14 6 4.0961 -5.8196 -0.0011 15 6 4.6284 -7.2282 -0.0009 16 6 3.6231 -8.0878 0.0003 17 6 3.7630 -9.5561 0.0003 18 6 3.5216 -10.2829 1.1556 19 6 3.6510 -11.6665 1.1622 20 6 4.0185 -12.3458 0.0397 21 6 4.2737 -11.6493 -1.1541 22 6 4.6536 -12.3276 -2.3254 23 6 4.8904 -11.6223 -3.4653 24 6 4.7648 -10.2350 -3.4889 25 6 4.3994 -9.5458 -2.3721 26 6 4.1460 -10.2392 -1.1803 27 6 2.3144 -7.3427 -0.0071 28 1 -0.4849 0.8401 0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6241 -2.5566 0.8903 31 1 3.1567 -3.4354 0.0002 32 1 4.4363 -5.2950 0.8918 33 1 4.4377 -5.2939 -0.8926 34 1 5.6746 -7.4965 -0.0016 35 1 3.2292 -9.7691 2.0593 36 1 3.4576 -12.2130 2.0734 37 1 4.1096 -13.4216 0.0662 38 1 4.7555 -13.4027 -2.3212 39 1 5.1818 -12.1456 -4.3641 40 1 4.9586 -9.6985 -4.4059 41 1 4.3054 -8.4705 -2.4046 42 1 1.7475 -7.5963 -0.9029 43 1 1.7388 -7.5974 0.8828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336454026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:52 Heat of formation + Delta-G solvation = 40.716686 kcal Electronic energy + Delta-G solvation = -25262.227509 eV Core-core repulsion = 21658.500354 eV Total energy + Delta-G solvation = -3603.727155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.80902 -39.78873 -37.70761 -36.57780 -34.16276 -33.69611 -32.31491 -31.11453 -30.56181 -29.54269 -28.35142 -26.96670 -24.41540 -23.56510 -23.14133 -22.21809 -22.02568 -19.51574 -19.16900 -18.15878 -17.69367 -16.90882 -16.48482 -15.98499 -15.83575 -15.22297 -14.97285 -14.69032 -14.49371 -14.04916 -13.84990 -13.81140 -13.61238 -13.13052 -12.99991 -12.82700 -12.78400 -12.73039 -12.26593 -11.96518 -11.80350 -11.72585 -11.50600 -11.28048 -11.02000 -10.94937 -10.88315 -10.29941 -10.13031 -9.49045 -9.47865 -9.36807 -8.89083 -8.72839 -8.28274 -8.03996 -7.72428 -6.14753 -4.21406 0.19541 0.76028 1.60673 1.85243 2.71763 3.02541 3.25326 3.31536 3.34156 3.81177 3.87697 4.18252 4.31659 4.43212 4.56845 4.60191 4.62366 4.76053 4.84096 4.87070 5.08280 5.13077 5.14330 5.21307 5.24447 5.34811 5.47335 5.49763 5.64675 5.69076 5.72844 5.84996 5.89749 5.96712 6.08016 6.16400 6.25967 6.29375 6.36297 6.54168 6.59847 6.72640 7.17783 7.49500 7.56952 7.57582 7.87713 8.02593 8.75205 8.88706 9.30154 9.47249 10.95491 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.002273 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.050190 B =12316.974262 C =12752.721048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.724 5.724 11 C 0.720 3.280 12 O -0.593 6.593 13 N -0.645 5.645 14 C 0.126 3.874 15 C -0.144 4.144 16 C -0.104 4.104 17 C -0.018 4.018 18 C -0.101 4.101 19 C -0.112 4.112 20 C -0.107 4.107 21 C -0.051 4.051 22 C -0.110 4.110 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.099 4.099 26 C -0.037 4.037 27 C 0.167 3.833 28 H 0.266 0.734 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.387 0.613 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.074 0.926 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.966 -25.772 -2.198 29.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.376 5.376 11 C 0.422 3.578 12 O -0.471 6.471 13 N -0.386 5.386 14 C 0.002 3.998 15 C -0.162 4.162 16 C -0.105 4.105 17 C -0.018 4.018 18 C -0.119 4.119 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.051 4.051 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.136 4.136 25 C -0.117 4.117 26 C -0.037 4.037 27 C 0.043 3.957 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.219 0.781 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.092 0.908 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.774 -25.629 -2.191 28.720 hybrid contribution 0.950 0.954 -0.013 1.347 sum 13.724 -24.675 -2.204 28.321 Atomic orbital electron populations 1.69983 1.06083 1.27274 1.48895 1.24946 0.94925 0.99397 0.94769 0.86405 0.79592 0.82637 0.78197 1.20471 1.21004 1.19774 1.21206 0.93248 0.90359 1.53169 0.91954 1.19024 0.87760 0.80932 0.97724 1.45718 1.10951 1.03975 1.76975 1.15461 0.83843 0.80081 0.78451 1.90892 1.13520 1.83651 1.59032 1.47248 1.05467 1.05199 1.80715 1.20680 0.81391 0.95488 1.02216 1.23671 0.98987 0.93534 1.00042 1.20376 0.95787 0.91551 1.02793 1.18337 0.99896 0.90591 0.92979 1.21255 0.99152 0.93852 0.97611 1.20765 0.99618 0.94094 0.98564 1.21057 0.99624 0.99719 0.92123 1.18027 1.00263 0.92367 0.94428 1.21022 0.99875 0.99668 0.92212 1.20873 0.99898 0.94351 0.98215 1.20917 0.99797 0.94362 0.98554 1.21100 0.98314 1.00345 0.91975 1.18004 0.99884 0.92395 0.93447 1.20162 0.93877 0.79231 1.02406 0.92449 0.95641 0.95618 0.78066 0.90427 0.90449 0.83635 0.85444 0.85666 0.85611 0.85609 0.86005 0.85873 0.85281 0.90792 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.24 5.43 -5.19 -0.03 7.21 16 10 N -0.72 -16.06 5.52 -66.41 -0.37 -16.43 16 11 C 0.72 15.72 8.53 -86.91 -0.74 14.98 16 12 O -0.59 -15.48 16.74 5.29 0.09 -15.39 16 13 N -0.64 -10.73 3.36 -181.63 -0.61 -11.34 16 14 C 0.13 1.54 6.31 -5.02 -0.03 1.51 16 15 C -0.14 -1.47 10.37 -36.29 -0.38 -1.85 16 16 C -0.10 -1.19 4.40 -102.83 -0.45 -1.64 16 17 C -0.02 -0.19 5.70 -104.67 -0.60 -0.78 16 18 C -0.10 -0.96 9.74 -39.18 -0.38 -1.34 16 19 C -0.11 -0.91 9.93 -40.03 -0.40 -1.31 16 20 C -0.11 -0.87 9.75 -39.42 -0.38 -1.26 16 21 C -0.05 -0.49 5.74 -106.85 -0.61 -1.10 16 22 C -0.11 -0.89 9.77 -39.46 -0.39 -1.27 16 23 C -0.12 -0.91 9.95 -39.94 -0.40 -1.30 16 24 C -0.12 -1.03 9.95 -39.90 -0.40 -1.43 16 25 C -0.10 -1.01 9.37 -39.57 -0.37 -1.38 16 26 C -0.04 -0.40 5.76 -106.57 -0.61 -1.01 16 27 C 0.17 2.41 6.93 -5.02 -0.03 2.38 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.39 7.39 7.41 -40.82 -0.30 7.09 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 1.30 6.87 -52.49 -0.36 0.94 16 42 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -33.99 367.57 -11.95 -45.94 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.69 Total: 4.37 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -6.62 Total: -3.07 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.24 Total: -53.29 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.09 Total: -15.39 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.99 -11.95 -45.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336454026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.653 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds