Wall clock time and date at job start Tue Mar 31 2020 13:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99931 * 2 1 4 4 H 1.48502 * 109.46962 * 269.99728 * 3 2 1 5 5 H 1.48498 * 109.47270 * 30.00251 * 3 2 1 6 6 H 1.48501 * 109.46786 * 149.99815 * 3 2 1 7 7 C 1.37876 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00125 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99944 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99603 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00547 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99451 * 179.97438 * 11 10 9 14 14 C 1.46914 * 127.08854 * 359.97438 * 13 11 10 15 15 C 1.50591 * 107.26131 * 179.97438 * 14 13 11 16 16 C 1.32267 * 109.82692 * 359.97438 * 15 14 13 17 17 C 1.47496 * 125.08926 * 179.97438 * 16 15 14 18 18 C 1.38608 * 120.36726 * 105.04870 * 17 16 15 19 19 C 1.38965 * 120.65529 * 179.97438 * 18 17 16 20 20 C 1.36249 * 121.16969 * 0.07097 * 19 18 17 21 21 C 1.40555 * 120.10933 * 359.95271 * 20 19 18 22 22 C 1.40583 * 121.17218 * 180.02562 * 21 20 19 23 23 C 1.36124 * 119.65074 * 179.85865 * 22 21 20 24 24 C 1.39314 * 120.96013 * 0.14514 * 23 22 21 25 25 C 1.36229 * 120.93529 * 359.90071 * 24 23 22 26 26 C 1.40184 * 119.68459 * 0.02562 * 25 24 23 27 27 C 1.46912 * 127.08290 * 180.29172 * 13 11 10 28 28 H 0.97003 * 119.99433 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47066 * 59.99371 * 9 7 2 30 30 H 1.09001 * 109.46551 * 299.99825 * 9 7 2 31 31 H 0.97001 * 120.00104 * 359.97438 * 10 9 7 32 32 H 1.09004 * 109.88249 * 60.58944 * 14 13 11 33 33 H 1.08991 * 110.01191 * 299.48581 * 14 13 11 34 34 H 1.07999 * 125.08565 * 179.97438 * 15 14 13 35 35 H 1.07993 * 119.67473 * 0.02562 * 18 17 16 36 36 H 1.07997 * 119.41213 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.94386 * 180.22220 * 20 19 18 38 38 H 1.07997 * 120.17268 * 359.95791 * 22 21 20 39 39 H 1.08006 * 119.52051 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.53091 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.15907 * 180.02562 * 25 24 23 42 42 H 1.09007 * 110.02787 * 60.65360 * 27 13 11 43 43 H 1.09003 * 109.74646 * 299.48793 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5583 -5.1055 0.0000 13 7 2.6296 -5.9078 -0.0005 14 6 4.0961 -5.8196 -0.0011 15 6 4.6284 -7.2282 -0.0009 16 6 3.6231 -8.0878 0.0003 17 6 3.7630 -9.5561 0.0003 18 6 3.5216 -10.2829 1.1556 19 6 3.6510 -11.6665 1.1622 20 6 4.0185 -12.3458 0.0397 21 6 4.2737 -11.6493 -1.1541 22 6 4.6536 -12.3276 -2.3254 23 6 4.8904 -11.6223 -3.4653 24 6 4.7648 -10.2350 -3.4889 25 6 4.3994 -9.5458 -2.3721 26 6 4.1460 -10.2392 -1.1803 27 6 2.3144 -7.3427 -0.0071 28 1 -0.4849 0.8401 0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6241 -2.5566 0.8903 31 1 3.1567 -3.4354 0.0002 32 1 4.4363 -5.2950 0.8918 33 1 4.4377 -5.2939 -0.8926 34 1 5.6746 -7.4965 -0.0016 35 1 3.2292 -9.7691 2.0593 36 1 3.4576 -12.2130 2.0734 37 1 4.1096 -13.4216 0.0662 38 1 4.7555 -13.4027 -2.3212 39 1 5.1818 -12.1456 -4.3641 40 1 4.9586 -9.6985 -4.4059 41 1 4.3054 -8.4705 -2.4046 42 1 1.7475 -7.5963 -0.9029 43 1 1.7388 -7.5974 0.8828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336454026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:51 Heat of formation + Delta-G solvation = 21.088059 kcal Electronic energy + Delta-G solvation = -25263.078670 eV Core-core repulsion = 21658.500354 eV Total energy + Delta-G solvation = -3604.578316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70483 -41.03321 -39.10198 -37.26727 -36.19494 -34.75071 -34.19421 -32.18796 -31.20367 -30.39818 -29.67933 -28.64694 -25.76114 -24.39324 -24.08204 -23.75983 -22.80046 -21.20882 -20.18822 -19.58430 -18.36774 -18.12931 -17.62074 -17.26865 -17.05798 -16.93571 -16.49233 -15.74988 -15.51172 -15.20230 -14.93593 -14.75427 -14.50303 -14.37036 -14.23626 -13.97898 -13.94941 -13.85702 -13.71000 -13.50733 -13.00241 -12.90284 -12.71426 -12.56991 -12.22459 -12.16593 -11.90580 -11.70022 -11.49285 -11.40227 -10.84366 -10.81399 -10.57823 -9.94544 -9.54370 -9.30811 -8.71226 -8.28769 -6.45623 -0.46351 0.10566 0.80519 1.11059 1.42707 1.46797 1.52933 1.59507 2.08837 2.09756 2.38325 3.06174 3.11150 3.17765 3.36545 3.64229 3.81718 3.97787 4.00219 4.15003 4.18631 4.31770 4.36645 4.38821 4.46581 4.53505 4.54651 4.56210 4.65734 4.84423 4.96408 5.03255 5.13109 5.20347 5.23415 5.23892 5.28700 5.36323 5.45514 5.48712 5.60704 5.65025 5.68800 5.71359 5.82200 5.92789 6.10692 6.13393 6.65106 7.08479 7.24000 7.59246 8.83677 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.002273 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.050190 B =12316.974262 C =12752.721048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.716 5.716 11 C 0.717 3.283 12 O -0.644 6.644 13 N -0.640 5.640 14 C 0.116 3.884 15 C -0.122 4.122 16 C -0.104 4.104 17 C -0.039 4.039 18 C -0.104 4.104 19 C -0.121 4.121 20 C -0.102 4.102 21 C -0.072 4.072 22 C -0.109 4.109 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.053 4.053 27 C 0.164 3.836 28 H 0.269 0.731 29 H -0.014 1.014 30 H -0.013 1.013 31 H 0.405 0.595 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.178 0.822 35 H 0.131 0.869 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.121 0.879 42 H 0.059 0.941 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.312 -27.010 -2.348 32.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.370 5.370 11 C 0.419 3.581 12 O -0.527 6.527 13 N -0.379 5.379 14 C -0.006 4.006 15 C -0.140 4.140 16 C -0.105 4.105 17 C -0.040 4.040 18 C -0.122 4.122 19 C -0.138 4.138 20 C -0.120 4.120 21 C -0.072 4.072 22 C -0.127 4.127 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.141 4.141 26 C -0.053 4.053 27 C 0.040 3.960 28 H 0.078 0.922 29 H 0.004 0.996 30 H 0.005 0.995 31 H 0.240 0.760 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.195 0.805 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.170 0.830 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.139 0.861 42 H 0.077 0.923 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.205 -26.923 -2.341 31.511 hybrid contribution -0.109 1.193 0.006 1.198 sum 16.096 -25.730 -2.334 30.440 Atomic orbital electron populations 1.70150 1.08306 1.28620 1.49828 1.26087 0.95806 1.03916 0.93810 0.85116 0.78463 0.76749 0.78622 1.19548 1.20940 1.17826 1.21562 0.94302 0.90251 1.53073 0.89752 1.18472 0.88054 0.83143 0.94092 1.45279 1.11055 1.03269 1.77354 1.15536 0.83743 0.80705 0.78124 1.90846 1.16184 1.84546 1.61101 1.47081 1.07180 1.04955 1.78704 1.21029 0.78319 0.97490 1.03713 1.23811 1.00073 0.91683 0.98424 1.20115 0.93952 0.92234 1.04208 1.18320 1.01936 0.89987 0.93736 1.21472 0.98529 0.94786 0.97419 1.21053 0.99455 0.93576 0.99751 1.21420 0.98054 1.01118 0.91393 1.18357 1.00895 0.92152 0.95754 1.21379 0.98660 1.01049 0.91594 1.21198 0.99574 0.94040 0.99282 1.21198 0.98782 0.95181 0.98612 1.21136 1.00080 1.00207 0.92694 1.18187 1.00325 0.93254 0.93492 1.20248 0.96026 0.78305 1.01398 0.92197 0.99566 0.99506 0.75972 0.88881 0.88900 0.80520 0.85068 0.83249 0.82833 0.82952 0.83515 0.84494 0.86069 0.92283 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.99 42.48 29.54 68.60 2.03 44.51 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.55 -30.58 9.28 25.60 0.24 -30.34 16 8 H 0.08 4.19 7.60 -2.91 -0.02 4.16 16 9 C 0.29 16.26 5.43 85.63 0.46 16.72 16 10 N -0.72 -32.61 5.52 -482.28 -2.66 -35.27 16 11 C 0.72 32.65 8.53 179.05 1.53 34.18 16 12 O -0.64 -35.80 16.74 -3.98 -0.07 -35.87 16 13 N -0.64 -21.71 3.36 -846.81 -2.85 -24.56 16 14 C 0.12 2.68 6.31 85.52 0.54 3.22 16 15 C -0.12 -2.29 10.37 24.60 0.26 -2.04 16 16 C -0.10 -2.35 4.40 -18.51 -0.08 -2.43 16 17 C -0.04 -0.83 5.70 -19.90 -0.11 -0.94 16 18 C -0.10 -1.89 9.74 22.53 0.22 -1.67 16 19 C -0.12 -1.72 9.93 21.98 0.22 -1.51 16 20 C -0.10 -1.42 9.75 22.37 0.22 -1.20 16 21 C -0.07 -1.26 5.74 -21.31 -0.12 -1.38 16 22 C -0.11 -1.49 9.77 22.35 0.22 -1.27 16 23 C -0.12 -1.66 9.95 22.04 0.22 -1.44 16 24 C -0.12 -1.95 9.95 22.06 0.22 -1.73 16 25 C -0.12 -2.46 9.37 22.27 0.21 -2.25 16 26 C -0.05 -1.09 5.76 -21.12 -0.12 -1.21 16 27 C 0.16 4.93 6.93 85.52 0.59 5.52 16 28 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 29 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 31 H 0.40 15.27 7.41 -92.71 -0.69 14.58 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 37 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.12 2.47 6.87 -2.91 -0.02 2.45 16 42 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -77.74 367.57 2.24 -75.51 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.34 Total: 21.26 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 5.16 Total: 10.90 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -5.23 Total: -116.30 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.07 Total: -35.87 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -77.74 2.24 -75.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336454026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.596 kcal (2) G-P(sol) polarization free energy of solvation -77.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds