Wall clock time and date at job start Tue Mar 31 2020 13:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48503 * 109.47286 * 240.00070 * 3 2 1 5 5 H 1.48506 * 109.47122 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47292 * 120.00174 * 3 2 1 7 7 C 1.37881 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99728 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00175 * 179.72402 * 10 9 7 12 12 O 1.21588 * 119.99712 * 355.13753 * 11 10 9 13 13 N 1.34777 * 119.99930 * 175.14034 * 11 10 9 14 14 C 1.46729 * 120.08091 * 184.56976 * 13 11 10 15 15 C 1.50568 * 109.48636 * 222.57958 * 14 13 11 16 16 C 1.37758 * 120.52031 * 109.00674 * 15 14 13 17 17 C 1.38406 * 119.97227 * 179.06339 * 16 15 14 18 18 C 1.38347 * 120.22272 * 0.02562 * 17 16 15 19 19 C 1.38038 * 120.23697 * 0.36768 * 18 17 16 20 20 C 1.39247 * 119.82447 * 359.89032 * 19 18 17 21 21 C 1.48105 * 120.60783 * 179.34867 * 20 19 18 22 22 C 1.39227 * 120.66878 * 50.84300 * 21 20 19 23 23 C 1.38054 * 119.78354 * 178.37427 * 22 21 20 24 24 C 1.38336 * 120.23028 * 0.03297 * 23 22 21 25 25 C 1.38398 * 120.24563 * 0.30552 * 24 23 22 26 26 C 1.37786 * 119.95886 * 359.94673 * 25 24 23 27 27 C 1.46664 * 120.08796 * 4.83931 * 13 11 10 28 28 H 0.96999 * 120.00392 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47148 * 60.00348 * 9 7 2 30 30 H 1.09000 * 109.46893 * 299.99739 * 9 7 2 31 31 H 0.97002 * 119.99830 * 359.97438 * 10 9 7 32 32 H 1.09001 * 109.50160 * 342.61381 * 14 13 11 33 33 H 1.08995 * 109.50748 * 102.72861 * 14 13 11 34 34 H 1.08000 * 120.01653 * 359.04633 * 16 15 14 35 35 H 1.07991 * 119.88332 * 180.02562 * 17 16 15 36 36 H 1.07998 * 119.87724 * 180.37038 * 18 17 16 37 37 H 1.08007 * 120.08214 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.11184 * 358.35454 * 22 21 20 39 39 H 1.08004 * 119.88306 * 180.02562 * 23 22 21 40 40 H 1.08003 * 119.88003 * 180.32321 * 24 23 22 41 41 H 1.07998 * 120.01815 * 179.97438 * 25 24 23 42 42 H 1.09006 * 109.50843 * 342.50649 * 27 13 11 43 43 H 1.08995 * 109.50918 * 102.65649 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 1.7537 -4.8834 0.0032 12 8 0.5621 -5.1065 0.0965 13 7 2.6253 -5.9066 -0.0954 14 6 2.1329 -7.2855 -0.1914 15 6 2.9699 -8.1798 0.6842 16 6 2.4484 -8.7104 1.8436 17 6 3.2215 -9.5468 2.6301 18 6 4.5180 -9.8523 2.2564 19 6 5.0522 -9.3191 1.1006 20 6 4.2815 -8.4727 0.3077 21 6 4.8420 -7.8796 -0.9282 22 6 5.4650 -8.6809 -1.8812 23 6 5.9512 -8.1137 -3.0422 24 6 5.8217 -6.7537 -3.2602 25 6 5.2095 -5.9511 -2.3134 26 6 4.7257 -6.5070 -1.1492 27 6 4.0685 -5.6453 -0.1011 28 1 -0.4851 0.8400 -0.0004 29 1 0.6247 -2.5563 -0.8919 30 1 0.6240 -2.5575 0.8880 31 1 3.1566 -3.4354 -0.0010 32 1 1.0942 -7.3246 0.1366 33 1 2.2018 -7.6255 -1.2247 34 1 1.4369 -8.4737 2.1390 35 1 2.8111 -9.9623 3.5385 36 1 5.1142 -10.5103 2.8711 37 1 6.0648 -9.5589 0.8114 38 1 5.5680 -9.7427 -1.7127 39 1 6.4344 -8.7338 -3.7827 40 1 6.1994 -6.3168 -4.1728 41 1 5.1108 -4.8898 -2.4872 42 1 4.2472 -4.5945 -0.3296 43 1 4.4851 -5.8817 0.8779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336468187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:04 Heat of formation + Delta-G solvation = 30.522436 kcal Electronic energy + Delta-G solvation = -26463.532862 eV Core-core repulsion = 22859.363651 eV Total energy + Delta-G solvation = -3604.169211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88422 -39.03619 -38.51380 -35.58892 -34.26463 -32.83980 -32.49103 -31.86795 -31.12463 -29.41338 -27.46296 -26.50638 -25.42144 -23.75389 -22.56677 -21.71033 -21.44379 -20.70736 -19.29873 -18.10086 -17.10170 -16.54191 -16.13125 -16.06948 -15.43574 -15.33315 -15.17756 -14.72974 -14.63002 -14.28449 -13.80694 -13.55642 -13.38880 -13.22970 -13.05416 -12.67649 -12.59244 -12.31682 -12.09123 -12.01986 -11.84071 -11.60696 -11.28735 -11.09326 -10.96356 -10.94447 -10.85991 -10.27609 -9.52331 -9.46869 -9.37023 -8.98870 -8.92601 -8.71890 -8.43390 -8.39889 -7.73700 -6.13912 -4.20618 0.70856 1.11871 1.26036 1.52831 3.15739 3.26606 3.31642 3.33352 3.48329 3.85887 3.88390 4.32709 4.40529 4.53039 4.61488 4.69791 4.76104 4.81940 4.88097 4.90478 5.15476 5.21777 5.22279 5.24027 5.38092 5.46720 5.54779 5.60688 5.72203 5.81260 5.83096 5.92316 5.93360 6.15237 6.29908 6.33618 6.34765 6.40099 6.55846 6.69437 6.78269 6.83334 7.12016 7.51241 7.53907 7.58953 7.85461 8.03000 8.75652 8.89569 9.30961 9.48024 10.96306 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.003477 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.023554 B = 8051.704400 C = 9266.911221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.728 5.728 11 C 0.698 3.302 12 O -0.595 6.595 13 N -0.628 5.628 14 C 0.171 3.829 15 C -0.082 4.082 16 C -0.099 4.099 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.107 4.107 20 C -0.039 4.039 21 C -0.037 4.037 22 C -0.107 4.107 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.099 4.099 26 C -0.083 4.083 27 C 0.153 3.847 28 H 0.266 0.734 29 H 0.024 0.976 30 H 0.026 0.974 31 H 0.385 0.615 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.090 0.910 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.119 -20.425 -1.126 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.399 3.601 12 O -0.474 6.474 13 N -0.367 5.367 14 C 0.048 3.952 15 C -0.083 4.083 16 C -0.117 4.117 17 C -0.136 4.136 18 C -0.138 4.138 19 C -0.125 4.125 20 C -0.040 4.040 21 C -0.038 4.038 22 C -0.125 4.125 23 C -0.137 4.137 24 C -0.135 4.135 25 C -0.118 4.118 26 C -0.084 4.084 27 C 0.029 3.971 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.220 0.780 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.108 0.892 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.001 -20.364 -1.074 24.184 hybrid contribution 1.017 0.964 -0.012 1.401 sum 14.018 -19.400 -1.086 23.959 Atomic orbital electron populations 1.69964 1.06087 1.27374 1.48825 1.24930 0.94895 0.99339 0.94748 0.86485 0.79423 0.82382 0.78664 1.20084 1.21071 1.20083 1.21174 0.93171 0.90445 1.53289 0.92077 1.18993 0.87796 0.81027 0.97641 1.45894 1.10836 1.04361 1.77113 1.16055 0.84760 0.81011 0.78243 1.90860 1.14241 1.83752 1.58576 1.47350 1.04483 1.05321 1.79560 1.20077 0.98193 0.79166 0.97788 1.20195 0.94066 0.97999 0.96080 1.21042 1.00425 0.96715 0.93530 1.21238 0.94372 0.98302 0.99668 1.21081 0.95664 1.00161 0.96847 1.21123 0.99499 0.97064 0.94847 1.18647 0.93366 0.97531 0.94440 1.18601 0.98581 0.92609 0.93993 1.21116 0.98318 0.99435 0.93635 1.21091 1.00075 0.95194 0.97310 1.21232 0.99219 0.93828 0.99190 1.21040 0.97480 1.00485 0.92758 1.20116 0.98773 0.93426 0.96074 1.20364 0.80961 0.98810 0.96936 0.92403 0.95781 0.95619 0.78007 0.88141 0.91608 0.85368 0.85870 0.85957 0.85894 0.85879 0.85933 0.85800 0.85268 0.89223 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.16 16 9 C 0.27 7.21 5.43 -5.19 -0.03 7.18 16 10 N -0.73 -16.07 5.44 -66.41 -0.36 -16.43 16 11 C 0.70 15.06 8.27 -86.92 -0.72 14.34 16 12 O -0.60 -15.14 15.77 5.29 0.08 -15.06 16 13 N -0.63 -10.58 3.02 -181.90 -0.55 -11.13 16 14 C 0.17 2.58 5.53 -5.13 -0.03 2.55 16 15 C -0.08 -1.07 5.09 -104.36 -0.53 -1.60 16 16 C -0.10 -1.16 9.68 -39.70 -0.38 -1.54 16 17 C -0.12 -1.16 10.05 -39.48 -0.40 -1.55 16 18 C -0.12 -1.09 10.03 -39.61 -0.40 -1.49 16 19 C -0.11 -1.06 9.59 -39.28 -0.38 -1.44 16 20 C -0.04 -0.46 4.82 -104.98 -0.51 -0.97 16 21 C -0.04 -0.44 4.84 -105.01 -0.51 -0.95 16 22 C -0.11 -1.06 9.59 -39.28 -0.38 -1.44 16 23 C -0.12 -1.08 10.03 -39.61 -0.40 -1.48 16 24 C -0.12 -1.15 10.04 -39.49 -0.40 -1.54 16 25 C -0.10 -1.14 9.69 -39.69 -0.38 -1.52 16 26 C -0.08 -1.04 5.09 -104.28 -0.53 -1.57 16 27 C 0.15 2.12 5.48 -5.07 -0.03 2.10 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.39 7.36 5.82 -40.82 -0.24 7.12 16 32 H 0.10 1.64 6.87 -51.93 -0.36 1.28 16 33 H 0.07 0.97 7.71 -51.93 -0.40 0.57 16 34 H 0.13 1.44 8.00 -52.49 -0.42 1.02 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.13 1.39 8.01 -52.49 -0.42 0.97 16 42 H 0.09 1.20 5.55 -51.93 -0.29 0.92 16 43 H 0.07 0.96 7.69 -51.93 -0.40 0.56 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -33.13 356.53 -11.58 -44.71 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.44 Total: 6.50 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -6.41 Total: -4.35 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.17 Total: -53.04 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.08 Total: -15.06 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.13 -11.58 -44.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336468187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.235 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds