Wall clock time and date at job start Tue Mar 31 2020 13:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99544 * 2 1 4 4 H 1.48503 * 109.46926 * 239.99304 * 3 2 1 5 5 H 1.48495 * 109.47538 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46876 * 119.99765 * 3 2 1 7 7 C 1.37869 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99791 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.34771 * 119.99937 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99953 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00054 * 180.02562 * 11 10 9 14 14 C 1.46539 * 124.98220 * 359.97027 * 13 11 10 15 15 C 1.53748 * 105.16860 * 180.02562 * 14 13 11 16 16 C 1.51191 * 104.56829 * 359.97438 * 15 14 13 17 17 C 1.38380 * 108.61898 * 0.02562 * 16 15 14 18 18 C 1.39691 * 119.11457 * 180.02562 * 17 16 15 19 19 C 1.37953 * 120.54245 * 359.97438 * 18 17 16 20 20 C 1.38038 * 120.36868 * 359.76336 * 19 18 17 21 21 C 1.39244 * 130.98872 * 180.02562 * 16 15 14 22 22 C 1.48398 * 120.05044 * 359.92638 * 21 16 15 23 23 C 1.39331 * 120.12372 * 309.98971 * 22 21 16 24 24 C 1.38023 * 119.87751 * 180.02562 * 23 22 21 25 25 C 1.38325 * 120.11867 * 359.97374 * 24 23 22 26 26 C 1.38316 * 120.24405 * 0.02562 * 25 24 23 27 27 C 1.38015 * 120.12267 * 0.02562 * 26 25 24 28 28 H 0.96994 * 120.00257 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47544 * 59.99868 * 9 7 2 30 30 H 1.08994 * 109.46981 * 299.99405 * 9 7 2 31 31 H 0.97003 * 120.00043 * 359.97438 * 10 9 7 32 32 H 1.08998 * 110.30375 * 61.08124 * 14 13 11 33 33 H 1.09005 * 110.38509 * 298.96937 * 14 13 11 34 34 H 1.09003 * 110.41240 * 241.22691 * 15 14 13 35 35 H 1.09004 * 110.41758 * 118.77222 * 15 14 13 36 36 H 1.08001 * 119.72529 * 179.97438 * 18 17 16 37 37 H 1.08006 * 119.81590 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.16392 * 180.24564 * 20 19 18 39 39 H 1.07993 * 120.06321 * 0.03596 * 23 22 21 40 40 H 1.07999 * 119.94158 * 180.25070 * 24 23 22 41 41 H 1.08006 * 119.87432 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.93745 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.06140 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5585 -5.1055 0.0000 13 7 2.6298 -5.9077 0.0005 14 6 4.0883 -5.7660 0.0010 15 6 4.6322 -7.2041 0.0009 16 6 3.3980 -8.0774 0.0009 17 6 2.2798 -7.2622 0.0005 18 6 1.0116 -7.8478 0.0010 19 6 0.8734 -9.2204 0.0013 20 6 1.9884 -10.0342 -0.0037 21 6 3.2596 -9.4630 0.0013 22 6 4.4639 -10.3301 0.0000 23 6 5.4829 -10.1103 -0.9245 24 6 6.6005 -10.9202 -0.9214 25 6 6.7102 -11.9482 -0.0024 26 6 5.7016 -12.1708 0.9176 27 6 4.5792 -11.3677 0.9228 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 3.1568 -3.4354 0.0002 32 1 4.4166 -5.2372 0.8958 33 1 4.4187 -5.2369 -0.8929 34 1 5.2263 -7.3859 0.8965 35 1 5.2269 -7.3856 -0.8944 36 1 0.1322 -7.2209 0.0011 37 1 -0.1129 -9.6608 0.0013 38 1 1.8762 -11.1083 -0.0074 39 1 5.3985 -9.3076 -1.6420 40 1 7.3928 -10.7482 -1.6349 41 1 7.5863 -12.5798 -0.0038 42 1 5.7926 -12.9746 1.6333 43 1 3.7921 -11.5427 1.6413 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336547587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:47 Heat of formation + Delta-G solvation = 25.048530 kcal Electronic energy + Delta-G solvation = -25617.910396 eV Core-core repulsion = 22013.503818 eV Total energy + Delta-G solvation = -3604.406577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05986 -39.46161 -38.27251 -36.20034 -34.38105 -33.05790 -32.45715 -31.30704 -30.85108 -29.41120 -28.37355 -27.09395 -23.88611 -23.61349 -22.68462 -22.51600 -21.39961 -21.10202 -19.55491 -18.17774 -16.94611 -16.37148 -16.19432 -16.12323 -15.64524 -15.21872 -15.20001 -14.78584 -14.66413 -14.31489 -14.02224 -13.63877 -13.51503 -13.19664 -12.92142 -12.76446 -12.49859 -12.34471 -12.30746 -12.00135 -11.79541 -11.64666 -11.63986 -11.24493 -11.02601 -10.91546 -10.82054 -10.34671 -10.12514 -9.52772 -9.45637 -9.32516 -9.17195 -8.79864 -8.33293 -8.08777 -7.50005 -6.20198 -4.27681 0.79362 1.17494 1.42661 1.64955 2.84812 3.22970 3.28078 3.29593 3.47347 3.64081 3.96840 4.21624 4.31985 4.49287 4.54938 4.69453 4.72447 4.75704 4.88185 5.01182 5.14185 5.15945 5.18338 5.27129 5.31953 5.40449 5.53396 5.58566 5.67797 5.75271 5.77743 5.81809 5.94944 6.22009 6.24953 6.27485 6.29132 6.53482 6.57086 6.63403 6.75749 6.99138 7.21042 7.34508 7.46958 7.47202 7.72850 7.93285 8.60217 8.75817 9.10702 9.39131 10.89902 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023985 B = 0.002512 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.091944 B =11144.454650 C =12121.472230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.265 3.735 10 N -0.718 5.718 11 C 0.702 3.298 12 O -0.577 6.577 13 N -0.573 5.573 14 C 0.098 3.902 15 C -0.079 4.079 16 C -0.137 4.137 17 C 0.186 3.814 18 C -0.133 4.133 19 C -0.090 4.090 20 C -0.141 4.141 21 C -0.013 4.013 22 C -0.036 4.036 23 C -0.106 4.106 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.107 4.107 28 H 0.267 0.733 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.389 0.611 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.422 -23.360 -0.009 26.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.369 5.369 11 C 0.404 3.596 12 O -0.454 6.454 13 N -0.300 5.300 14 C -0.025 4.025 15 C -0.116 4.116 16 C -0.141 4.141 17 C 0.088 3.912 18 C -0.154 4.154 19 C -0.109 4.109 20 C -0.160 4.160 21 C -0.014 4.014 22 C -0.036 4.036 23 C -0.124 4.124 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.125 4.125 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.222 0.778 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.297 -23.084 -0.007 26.155 hybrid contribution 0.896 1.119 0.004 1.434 sum 13.193 -21.965 -0.003 25.623 Atomic orbital electron populations 1.69961 1.06097 1.27526 1.48542 1.24939 0.94937 0.99429 0.94627 0.86448 0.79402 0.82201 0.78700 1.20043 1.21014 1.20037 1.21142 0.93229 0.90276 1.53668 0.91946 1.19085 0.87710 0.80818 0.97905 1.45819 1.11257 1.03940 1.75892 1.15860 0.84297 0.80618 0.78804 1.90855 1.13472 1.83453 1.57633 1.45245 1.06770 1.03598 1.74346 1.22108 0.79266 0.98089 1.03036 1.21049 0.95726 0.91336 1.03509 1.19831 0.94286 0.92253 1.07700 1.18090 0.94096 0.82574 0.96450 1.21117 0.96464 0.94962 1.02898 1.20827 0.98612 0.92579 0.98845 1.20950 0.91056 0.99451 1.04561 1.17917 0.92307 0.90056 1.01116 1.18805 0.93641 0.95164 0.95968 1.21255 0.93233 0.99541 0.98395 1.21099 0.97870 0.95724 0.99076 1.21188 0.98960 0.98167 0.95867 1.21086 0.94088 0.99590 0.99066 1.21248 0.98144 0.94721 0.98396 0.92300 0.95425 0.95416 0.77823 0.90052 0.90032 0.89390 0.89426 0.83852 0.85487 0.85883 0.85853 0.86001 0.86246 0.86046 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.67 9.28 -34.44 -0.32 -14.98 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.27 7.05 5.43 -5.19 -0.03 7.02 16 10 N -0.72 -15.51 5.50 -66.41 -0.37 -15.88 16 11 C 0.70 15.04 8.43 -86.93 -0.73 14.31 16 12 O -0.58 -14.37 14.50 5.29 0.08 -14.29 16 13 N -0.57 -9.79 3.13 -118.26 -0.37 -10.16 16 14 C 0.10 1.20 6.32 -3.63 -0.02 1.18 16 15 C -0.08 -0.84 6.03 -27.25 -0.16 -1.00 16 16 C -0.14 -1.81 5.97 -103.96 -0.62 -2.43 16 17 C 0.19 3.01 6.62 -83.58 -0.55 2.46 16 18 C -0.13 -2.15 9.45 -39.14 -0.37 -2.52 16 19 C -0.09 -1.14 10.00 -39.76 -0.40 -1.54 16 20 C -0.14 -1.62 9.53 -39.23 -0.37 -2.00 16 21 C -0.01 -0.16 5.47 -104.92 -0.57 -0.73 16 22 C -0.04 -0.37 5.36 -104.90 -0.56 -0.93 16 23 C -0.11 -0.99 8.82 -39.25 -0.35 -1.33 16 24 C -0.12 -0.95 10.03 -39.63 -0.40 -1.35 16 25 C -0.12 -0.93 10.04 -39.52 -0.40 -1.33 16 26 C -0.12 -0.95 10.03 -39.63 -0.40 -1.34 16 27 C -0.11 -0.98 9.52 -39.25 -0.37 -1.35 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.39 7.19 7.26 -40.82 -0.30 6.89 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.76 6.91 -51.93 -0.36 0.41 16 36 H 0.14 2.64 6.26 -52.49 -0.33 2.31 16 37 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.12 1.14 8.05 -52.49 -0.42 0.72 16 39 H 0.12 1.07 6.90 -52.49 -0.36 0.71 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 42 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.12 1.01 8.04 -52.49 -0.42 0.59 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -32.74 361.34 -11.76 -44.50 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.53 Total: 6.07 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -6.73 Total: -6.19 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.00 Total: -51.17 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.08 Total: -14.29 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.74 -11.76 -44.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336547587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.546 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds