Wall clock time and date at job start Tue Mar 31 2020 13:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99544 * 2 1 4 4 H 1.48503 * 109.46926 * 239.99304 * 3 2 1 5 5 H 1.48495 * 109.47538 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46876 * 119.99765 * 3 2 1 7 7 C 1.37869 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99791 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.34771 * 119.99937 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99953 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00054 * 180.02562 * 11 10 9 14 14 C 1.46539 * 124.98220 * 359.97027 * 13 11 10 15 15 C 1.53748 * 105.16860 * 180.02562 * 14 13 11 16 16 C 1.51191 * 104.56829 * 359.97438 * 15 14 13 17 17 C 1.38380 * 108.61898 * 0.02562 * 16 15 14 18 18 C 1.39691 * 119.11457 * 180.02562 * 17 16 15 19 19 C 1.37953 * 120.54245 * 359.97438 * 18 17 16 20 20 C 1.38038 * 120.36868 * 359.76336 * 19 18 17 21 21 C 1.39244 * 130.98872 * 180.02562 * 16 15 14 22 22 C 1.48398 * 120.05044 * 359.92638 * 21 16 15 23 23 C 1.39331 * 120.12372 * 309.98971 * 22 21 16 24 24 C 1.38023 * 119.87751 * 180.02562 * 23 22 21 25 25 C 1.38325 * 120.11867 * 359.97374 * 24 23 22 26 26 C 1.38316 * 120.24405 * 0.02562 * 25 24 23 27 27 C 1.38015 * 120.12267 * 0.02562 * 26 25 24 28 28 H 0.96994 * 120.00257 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47544 * 59.99868 * 9 7 2 30 30 H 1.08994 * 109.46981 * 299.99405 * 9 7 2 31 31 H 0.97003 * 120.00043 * 359.97438 * 10 9 7 32 32 H 1.08998 * 110.30375 * 61.08124 * 14 13 11 33 33 H 1.09005 * 110.38509 * 298.96937 * 14 13 11 34 34 H 1.09003 * 110.41240 * 241.22691 * 15 14 13 35 35 H 1.09004 * 110.41758 * 118.77222 * 15 14 13 36 36 H 1.08001 * 119.72529 * 179.97438 * 18 17 16 37 37 H 1.08006 * 119.81590 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.16392 * 180.24564 * 20 19 18 39 39 H 1.07993 * 120.06321 * 0.03596 * 23 22 21 40 40 H 1.07999 * 119.94158 * 180.25070 * 24 23 22 41 41 H 1.08006 * 119.87432 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.93745 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.06140 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5585 -5.1055 0.0000 13 7 2.6298 -5.9077 0.0005 14 6 4.0883 -5.7660 0.0010 15 6 4.6322 -7.2041 0.0009 16 6 3.3980 -8.0774 0.0009 17 6 2.2798 -7.2622 0.0005 18 6 1.0116 -7.8478 0.0010 19 6 0.8734 -9.2204 0.0013 20 6 1.9884 -10.0342 -0.0037 21 6 3.2596 -9.4630 0.0013 22 6 4.4639 -10.3301 0.0000 23 6 5.4829 -10.1103 -0.9245 24 6 6.6005 -10.9202 -0.9214 25 6 6.7102 -11.9482 -0.0024 26 6 5.7016 -12.1708 0.9176 27 6 4.5792 -11.3677 0.9228 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 3.1568 -3.4354 0.0002 32 1 4.4166 -5.2372 0.8958 33 1 4.4187 -5.2369 -0.8929 34 1 5.2263 -7.3859 0.8965 35 1 5.2269 -7.3856 -0.8944 36 1 0.1322 -7.2209 0.0011 37 1 -0.1129 -9.6608 0.0013 38 1 1.8762 -11.1083 -0.0074 39 1 5.3985 -9.3076 -1.6420 40 1 7.3928 -10.7482 -1.6349 41 1 7.5863 -12.5798 -0.0038 42 1 5.7926 -12.9746 1.6333 43 1 3.7921 -11.5427 1.6413 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336547587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:46 Heat of formation + Delta-G solvation = 6.889871 kcal Electronic energy + Delta-G solvation = -25618.697814 eV Core-core repulsion = 22013.503818 eV Total energy + Delta-G solvation = -3605.193996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28097 -40.49771 -39.40811 -37.37480 -36.31184 -34.44864 -34.01524 -32.24284 -31.65369 -30.50507 -29.37407 -28.94399 -25.39111 -24.57883 -24.07682 -23.27815 -22.56525 -22.08042 -21.11222 -19.53131 -18.17410 -17.79800 -17.50354 -17.38462 -16.77371 -16.57722 -16.28742 -16.00931 -15.78603 -15.57162 -15.32634 -14.82548 -14.42170 -14.26683 -14.14467 -14.09400 -13.74955 -13.73754 -13.36103 -13.32112 -12.95423 -12.92741 -12.68999 -12.65813 -12.46038 -12.24819 -11.88529 -11.74438 -11.54575 -11.25533 -11.22999 -10.83419 -10.18089 -10.00914 -9.77244 -9.19141 -8.73678 -8.31089 -6.48525 -0.03774 0.33934 0.57613 0.77005 1.39452 1.46634 1.47111 1.56134 2.00316 2.36223 2.74512 2.97389 3.00638 3.03904 3.47211 3.54652 3.73278 4.03839 4.11564 4.16845 4.19703 4.26574 4.35999 4.43596 4.47754 4.57124 4.61336 4.71327 4.79877 4.92281 4.92575 5.02113 5.12760 5.18784 5.21708 5.24693 5.36926 5.40301 5.45694 5.54149 5.59775 5.67016 5.69241 5.76394 5.78083 6.01637 6.08787 6.16166 6.60977 6.94833 7.20742 7.45999 8.81030 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023985 B = 0.002512 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.091944 B =11144.454650 C =12121.472230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.711 5.711 11 C 0.699 3.301 12 O -0.624 6.624 13 N -0.572 5.572 14 C 0.087 3.913 15 C -0.069 4.069 16 C -0.129 4.129 17 C 0.144 3.856 18 C -0.164 4.164 19 C -0.088 4.088 20 C -0.131 4.131 21 C -0.009 4.009 22 C -0.055 4.055 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.115 4.115 28 H 0.270 0.730 29 H -0.012 1.012 30 H -0.012 1.012 31 H 0.406 0.594 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.639 -25.078 -0.033 30.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.163 3.837 10 N -0.364 5.364 11 C 0.401 3.599 12 O -0.505 6.505 13 N -0.298 5.298 14 C -0.034 4.034 15 C -0.106 4.106 16 C -0.133 4.133 17 C 0.048 3.952 18 C -0.185 4.185 19 C -0.107 4.107 20 C -0.150 4.150 21 C -0.010 4.010 22 C -0.055 4.055 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.133 4.133 28 H 0.079 0.921 29 H 0.006 0.994 30 H 0.006 0.994 31 H 0.242 0.758 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.166 0.834 38 H 0.170 0.830 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.592 -24.873 -0.032 29.900 hybrid contribution -0.384 1.396 0.014 1.448 sum 16.208 -23.478 -0.018 28.529 Atomic orbital electron populations 1.70135 1.08305 1.28764 1.49602 1.26081 0.95805 1.03920 0.93711 0.85166 0.77883 0.76349 0.79568 1.18541 1.21072 1.18560 1.21521 0.94332 0.90189 1.53416 0.89682 1.18505 0.88001 0.83005 0.94230 1.45365 1.11312 1.03218 1.76511 1.15990 0.84294 0.81229 0.78390 1.90820 1.15940 1.84296 1.59465 1.45124 1.08148 1.02995 1.73556 1.22510 0.76319 1.00020 1.04503 1.21128 0.94791 0.89113 1.05593 1.20118 0.94228 0.92684 1.06264 1.18423 0.95231 0.82455 0.99130 1.21064 0.95653 0.96269 1.05535 1.21038 1.00386 0.91183 0.98065 1.21313 0.90447 1.00709 1.02514 1.18215 0.93435 0.89848 0.99466 1.18747 0.93387 0.95876 0.97523 1.21363 0.93430 1.00059 0.98303 1.21378 0.97862 0.95381 0.99477 1.21553 0.99500 0.97948 0.95046 1.21376 0.93580 0.99755 0.99479 1.21389 0.98964 0.94603 0.98307 0.92142 0.99367 0.99385 0.75774 0.88732 0.88456 0.87525 0.86901 0.87553 0.83419 0.83003 0.85580 0.83993 0.83926 0.83997 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.44 0.28 -56.08 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.99 42.16 29.54 68.60 2.03 44.19 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.29 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.56 -30.47 9.28 25.60 0.24 -30.23 16 8 H 0.09 4.17 7.60 -2.91 -0.02 4.14 16 9 C 0.29 16.10 5.43 85.63 0.46 16.57 16 10 N -0.71 -32.11 5.50 -482.29 -2.65 -34.77 16 11 C 0.70 31.88 8.43 179.06 1.51 33.38 16 12 O -0.62 -34.02 14.50 -3.99 -0.06 -34.08 16 13 N -0.57 -20.20 3.13 -646.34 -2.02 -22.23 16 14 C 0.09 2.04 6.32 86.62 0.55 2.59 16 15 C -0.07 -1.31 6.03 30.26 0.18 -1.12 16 16 C -0.13 -3.29 5.97 -19.43 -0.12 -3.40 16 17 C 0.14 4.83 6.62 38.24 0.25 5.09 16 18 C -0.16 -5.69 9.45 22.55 0.21 -5.47 16 19 C -0.09 -2.28 10.00 22.15 0.22 -2.06 16 20 C -0.13 -2.83 9.53 22.49 0.21 -2.61 16 21 C -0.01 -0.20 5.47 -20.06 -0.11 -0.31 16 22 C -0.06 -0.99 5.36 -20.04 -0.11 -1.10 16 23 C -0.11 -1.76 8.82 22.48 0.20 -1.57 16 24 C -0.12 -1.50 10.03 22.24 0.22 -1.28 16 25 C -0.12 -1.36 10.04 22.31 0.22 -1.14 16 26 C -0.12 -1.51 10.03 22.24 0.22 -1.28 16 27 C -0.11 -1.76 9.52 22.48 0.21 -1.55 16 28 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 29 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.41 15.11 7.26 -92.71 -0.67 14.44 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.11 1.58 6.91 -2.38 -0.02 1.57 16 36 H 0.11 4.43 6.26 -2.91 -0.02 4.41 16 37 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 38 H 0.15 2.39 8.05 -2.91 -0.02 2.36 16 39 H 0.13 1.81 6.90 -2.91 -0.02 1.79 16 40 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.14 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 43 H 0.13 1.76 8.04 -2.91 -0.02 1.74 16 Total: -1.00 -76.76 361.34 2.99 -73.77 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.36 Total: 23.97 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.06 Total: 5.22 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -4.39 Total: -113.07 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.06 Total: -34.08 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -76.76 2.99 -73.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336547587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.658 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds