Wall clock time and date at job start Tue Mar 31 2020 13:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86803 * 119.99883 * 2 1 4 4 H 1.48500 * 109.46774 * 240.00154 * 3 2 1 5 5 H 1.48506 * 109.46824 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47001 * 119.99770 * 3 2 1 7 7 C 1.39887 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99903 * 185.58655 * 7 2 1 9 9 C 1.41155 * 120.00604 * 5.58798 * 7 2 1 10 10 C 1.40871 * 120.16757 * 214.20022 * 9 7 2 11 11 C 1.36379 * 119.82870 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.16782 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.83192 * 179.97438 * 12 11 10 14 14 C 1.34771 * 120.00050 * 35.33636 * 13 12 11 15 15 O 1.21589 * 119.99820 * 355.78978 * 14 13 12 16 16 N 1.34772 * 120.00236 * 175.79150 * 14 13 12 17 17 C 1.46506 * 120.00137 * 185.26398 * 16 14 13 18 18 C 1.50696 * 115.54860 * 66.13631 * 17 16 14 19 19 C 1.38235 * 119.99960 * 179.79998 * 18 17 16 20 20 C 1.38232 * 120.00081 * 179.74030 * 19 18 17 21 21 C 1.38235 * 119.99750 * 0.53442 * 20 19 18 22 22 C 1.38234 * 120.00192 * 359.74134 * 21 20 19 23 23 C 1.38231 * 120.00165 * 0.07056 * 18 17 16 24 24 C 1.52999 * 117.49659 * 211.80810 * 17 16 14 25 25 C 1.52999 * 117.49639 * 280.46467 * 17 16 14 26 26 C 1.39485 * 120.33488 * 0.25867 * 12 11 10 27 27 C 1.36373 * 120.16684 * 359.43924 * 26 12 11 28 28 H 0.96999 * 120.00109 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.08703 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.91214 * 179.97438 * 11 10 9 31 31 H 0.97001 * 120.00097 * 215.33380 * 13 12 11 32 32 H 0.97000 * 119.99910 * 5.26757 * 16 14 13 33 33 H 1.08000 * 119.99776 * 359.97438 * 19 18 17 34 34 H 1.08001 * 120.00001 * 180.29504 * 20 19 18 35 35 H 1.08002 * 119.99638 * 179.76422 * 21 20 19 36 36 H 1.08003 * 120.00050 * 179.97438 * 22 21 20 37 37 H 1.08000 * 119.99930 * 0.02562 * 23 18 17 38 38 H 1.09003 * 117.49462 * 215.00010 * 24 17 16 39 39 H 1.09000 * 117.50438 * 0.02562 * 24 17 16 40 40 H 1.08997 * 117.50428 * 359.97438 * 25 17 16 41 41 H 1.08999 * 117.49725 * 144.97343 * 25 17 16 42 42 H 1.07997 * 119.91669 * 179.70290 * 26 12 11 43 43 H 1.08001 * 120.08879 * 180.25144 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0965 1.6965 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0845 -1.2136 0.0916 9 6 1.3077 -2.4311 -0.1179 10 6 1.7689 -3.5806 0.5533 11 6 1.0869 -4.7555 0.4335 12 6 -0.0642 -4.8209 -0.3514 13 7 -0.7548 -6.0243 -0.4692 14 6 -0.8294 -6.8641 0.5822 15 8 -0.2303 -6.6078 1.6087 16 7 -1.5680 -7.9881 0.4958 17 6 -1.7432 -8.8418 1.6734 18 6 -2.5270 -8.2324 2.8071 19 6 -2.7511 -8.9591 3.9615 20 6 -3.4654 -8.3982 5.0036 21 6 -3.9651 -7.1146 4.8869 22 6 -3.7459 -6.3900 3.7303 23 6 -3.0266 -6.9489 2.6905 24 6 -1.8933 -10.3463 1.4392 25 6 -0.5981 -9.7897 2.0355 26 6 -0.5237 -3.6885 -1.0238 27 6 0.1441 -2.5051 -0.9087 28 1 -0.4850 0.8400 0.0004 29 1 2.6607 -3.5317 1.1604 30 1 1.4395 -5.6376 0.9471 31 1 -1.1822 -6.2581 -1.3080 32 1 -1.9835 -8.2319 -0.3461 33 1 -2.3648 -9.9637 4.0507 34 1 -3.6364 -8.9642 5.9074 35 1 -4.5265 -6.6778 5.6996 36 1 -4.1367 -5.3873 3.6390 37 1 -2.8556 -6.3829 1.7867 38 1 -2.5590 -10.8954 2.1052 39 1 -1.8613 -10.7011 0.4091 40 1 0.2855 -9.7785 1.3973 41 1 -0.4113 -9.9722 3.0937 42 1 -1.4131 -3.7480 -1.6336 43 1 -0.2151 -1.6281 -1.4266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338783925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:47 Heat of formation + Delta-G solvation = 55.255407 kcal Electronic energy + Delta-G solvation = -26004.682820 eV Core-core repulsion = 22401.586111 eV Total energy + Delta-G solvation = -3603.096709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.51581 -39.13701 -37.59736 -36.74464 -34.30716 -33.21576 -32.35541 -30.74209 -30.49016 -29.52831 -28.67872 -25.03580 -23.60600 -22.74159 -22.42555 -21.86215 -21.03715 -20.18520 -19.70193 -17.94331 -17.43765 -17.18731 -16.58033 -15.66880 -15.20258 -15.13227 -14.86228 -14.35354 -14.29522 -14.06223 -13.83967 -13.29933 -12.94979 -12.89753 -12.87075 -12.61293 -12.07445 -11.73798 -11.71116 -11.49931 -11.34420 -11.15550 -11.07780 -11.00615 -10.86502 -10.72192 -10.69878 -10.02303 -9.47149 -9.43237 -9.22587 -9.00515 -8.87635 -8.81617 -8.44845 -7.50582 -6.81967 -6.61238 -4.27874 1.35009 1.48378 2.69307 2.87594 3.10815 3.12419 3.14473 3.18677 3.50208 3.71237 4.01013 4.04267 4.32527 4.56484 4.69331 4.73905 4.84535 5.00752 5.03013 5.17169 5.34532 5.37602 5.57430 5.66255 5.69797 5.77778 5.91961 6.01769 6.07100 6.21399 6.42285 6.48635 6.52262 6.60781 6.77720 6.79664 6.86867 7.04473 7.08162 7.19049 7.30257 7.39712 7.67522 7.89627 7.98791 8.11002 8.34575 8.49665 8.66236 8.95577 8.97222 9.13514 10.33649 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018092 B = 0.002954 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.290320 B = 9475.365836 C =10313.335862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.105 3.895 10 C -0.206 4.206 11 C -0.083 4.083 12 C 0.022 3.978 13 N -0.668 5.668 14 C 0.694 3.306 15 O -0.561 6.561 16 N -0.723 5.723 17 C 0.164 3.836 18 C -0.045 4.045 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.087 4.087 24 C -0.166 4.166 25 C -0.161 4.161 26 C -0.121 4.121 27 C -0.139 4.139 28 H 0.278 0.722 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.391 0.609 32 H 0.395 0.605 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 -17.108 2.110 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.497 4.497 8 H 0.093 0.907 9 C 0.102 3.898 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.070 4.070 13 N -0.314 5.314 14 C 0.395 3.605 15 O -0.436 6.436 16 N -0.379 5.379 17 C 0.074 3.926 18 C -0.046 4.046 19 C -0.138 4.138 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.105 4.105 24 C -0.204 4.204 25 C -0.199 4.199 26 C -0.142 4.142 27 C -0.159 4.159 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.223 0.777 32 H 0.230 0.770 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.183 -16.668 3.069 18.820 hybrid contribution -0.128 0.721 -0.754 1.051 sum -8.310 -15.947 2.315 18.131 Atomic orbital electron populations 1.69788 1.07260 1.28872 1.37848 1.25844 0.94878 1.00991 0.92612 0.86315 0.79882 0.80356 0.79763 1.19048 1.20476 1.19138 1.19449 0.94874 0.90257 1.45073 0.90665 1.17666 0.91770 0.92145 0.88204 1.20786 1.02815 0.94038 1.04954 1.20420 0.93335 0.97946 0.98617 1.17014 0.96112 0.83896 1.09990 1.42118 1.56970 1.19606 1.12745 1.15994 0.80323 0.79915 0.84229 1.90951 1.48052 1.74766 1.29792 1.44424 1.56506 1.24997 1.12018 1.18638 1.01297 0.85762 0.86855 1.19081 0.97171 0.94607 0.93742 1.20809 1.00071 0.99801 0.93149 1.21007 0.98840 0.95728 0.98429 1.21121 1.00551 0.94870 0.97774 1.21175 0.98807 0.99816 0.93648 1.20933 0.96042 0.94332 0.99229 1.23446 1.01116 0.92850 1.02986 1.23408 0.92776 1.01333 1.02382 1.20230 0.99224 0.92392 1.02333 1.20897 0.98513 0.95462 1.01032 0.91110 0.88692 0.87367 0.77655 0.77049 0.86210 0.86194 0.86285 0.86063 0.86334 0.87540 0.87983 0.88044 0.87922 0.89216 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.45 10.95 55.54 0.61 -20.84 16 2 C 0.07 1.85 5.31 -17.34 -0.09 1.76 16 3 Si 0.91 19.21 29.56 -169.99 -5.03 14.18 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.47 -12.60 9.03 -37.86 -0.34 -12.95 16 8 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.10 2.84 5.50 -106.80 -0.59 2.25 16 10 C -0.21 -5.32 9.74 -39.26 -0.38 -5.70 16 11 C -0.08 -2.02 8.61 -39.79 -0.34 -2.37 16 12 C 0.02 0.50 6.30 -83.57 -0.53 -0.03 16 13 N -0.67 -11.71 5.31 -14.10 -0.07 -11.79 16 14 C 0.69 12.25 6.54 -86.93 -0.57 11.68 16 15 O -0.56 -12.37 13.03 5.29 0.07 -12.30 16 16 N -0.72 -9.34 4.92 -53.50 -0.26 -9.61 16 17 C 0.16 2.02 2.18 -132.97 -0.29 1.73 16 18 C -0.04 -0.62 5.44 -104.63 -0.57 -1.19 16 19 C -0.12 -1.41 8.72 -39.58 -0.35 -1.75 16 20 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 21 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 22 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 23 C -0.09 -1.36 8.67 -39.59 -0.34 -1.70 16 24 C -0.17 -1.41 9.77 -26.70 -0.26 -1.68 16 25 C -0.16 -1.78 9.77 -26.70 -0.26 -2.04 16 26 C -0.12 -2.77 9.90 -39.79 -0.39 -3.16 16 27 C -0.14 -3.59 8.57 -39.26 -0.34 -3.93 16 28 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 29 H 0.09 2.35 8.06 -52.49 -0.42 1.92 16 30 H 0.11 2.64 6.23 -52.49 -0.33 2.31 16 31 H 0.39 5.31 8.83 -40.82 -0.36 4.94 16 32 H 0.40 3.77 8.85 -40.82 -0.36 3.41 16 33 H 0.12 1.10 6.50 -52.49 -0.34 0.76 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.12 2.04 6.10 -52.49 -0.32 1.72 16 38 H 0.11 0.75 7.30 -51.93 -0.38 0.38 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.10 1.08 7.33 -51.93 -0.38 0.70 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.12 3.19 6.46 -52.49 -0.34 2.85 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -32.07 359.60 -11.42 -43.49 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -5.31 Total: 16.24 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -6.83 Total: -24.79 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.27 Total: -42.23 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.07 Total: -12.30 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.07 -11.42 -43.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338783925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.744 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds