Wall clock time and date at job start Tue Mar 31 2020 13:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86803 * 119.99883 * 2 1 4 4 H 1.48500 * 109.46774 * 240.00154 * 3 2 1 5 5 H 1.48506 * 109.46824 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47001 * 119.99770 * 3 2 1 7 7 C 1.39887 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99903 * 185.58655 * 7 2 1 9 9 C 1.41155 * 120.00604 * 5.58798 * 7 2 1 10 10 C 1.40871 * 120.16757 * 214.20022 * 9 7 2 11 11 C 1.36379 * 119.82870 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.16782 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.83192 * 179.97438 * 12 11 10 14 14 C 1.34771 * 120.00050 * 35.33636 * 13 12 11 15 15 O 1.21589 * 119.99820 * 355.78978 * 14 13 12 16 16 N 1.34772 * 120.00236 * 175.79150 * 14 13 12 17 17 C 1.46506 * 120.00137 * 185.26398 * 16 14 13 18 18 C 1.50696 * 115.54860 * 66.13631 * 17 16 14 19 19 C 1.38235 * 119.99960 * 179.79998 * 18 17 16 20 20 C 1.38232 * 120.00081 * 179.74030 * 19 18 17 21 21 C 1.38235 * 119.99750 * 0.53442 * 20 19 18 22 22 C 1.38234 * 120.00192 * 359.74134 * 21 20 19 23 23 C 1.38231 * 120.00165 * 0.07056 * 18 17 16 24 24 C 1.52999 * 117.49659 * 211.80810 * 17 16 14 25 25 C 1.52999 * 117.49639 * 280.46467 * 17 16 14 26 26 C 1.39485 * 120.33488 * 0.25867 * 12 11 10 27 27 C 1.36373 * 120.16684 * 359.43924 * 26 12 11 28 28 H 0.96999 * 120.00109 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.08703 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.91214 * 179.97438 * 11 10 9 31 31 H 0.97001 * 120.00097 * 215.33380 * 13 12 11 32 32 H 0.97000 * 119.99910 * 5.26757 * 16 14 13 33 33 H 1.08000 * 119.99776 * 359.97438 * 19 18 17 34 34 H 1.08001 * 120.00001 * 180.29504 * 20 19 18 35 35 H 1.08002 * 119.99638 * 179.76422 * 21 20 19 36 36 H 1.08003 * 120.00050 * 179.97438 * 22 21 20 37 37 H 1.08000 * 119.99930 * 0.02562 * 23 18 17 38 38 H 1.09003 * 117.49462 * 215.00010 * 24 17 16 39 39 H 1.09000 * 117.50438 * 0.02562 * 24 17 16 40 40 H 1.08997 * 117.50428 * 359.97438 * 25 17 16 41 41 H 1.08999 * 117.49725 * 144.97343 * 25 17 16 42 42 H 1.07997 * 119.91669 * 179.70290 * 26 12 11 43 43 H 1.08001 * 120.08879 * 180.25144 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0965 1.6965 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0845 -1.2136 0.0916 9 6 1.3077 -2.4311 -0.1179 10 6 1.7689 -3.5806 0.5533 11 6 1.0869 -4.7555 0.4335 12 6 -0.0642 -4.8209 -0.3514 13 7 -0.7548 -6.0243 -0.4692 14 6 -0.8294 -6.8641 0.5822 15 8 -0.2303 -6.6078 1.6087 16 7 -1.5680 -7.9881 0.4958 17 6 -1.7432 -8.8418 1.6734 18 6 -2.5270 -8.2324 2.8071 19 6 -2.7511 -8.9591 3.9615 20 6 -3.4654 -8.3982 5.0036 21 6 -3.9651 -7.1146 4.8869 22 6 -3.7459 -6.3900 3.7303 23 6 -3.0266 -6.9489 2.6905 24 6 -1.8933 -10.3463 1.4392 25 6 -0.5981 -9.7897 2.0355 26 6 -0.5237 -3.6885 -1.0238 27 6 0.1441 -2.5051 -0.9087 28 1 -0.4850 0.8400 0.0004 29 1 2.6607 -3.5317 1.1604 30 1 1.4395 -5.6376 0.9471 31 1 -1.1822 -6.2581 -1.3080 32 1 -1.9835 -8.2319 -0.3461 33 1 -2.3648 -9.9637 4.0507 34 1 -3.6364 -8.9642 5.9074 35 1 -4.5265 -6.6778 5.6996 36 1 -4.1367 -5.3873 3.6390 37 1 -2.8556 -6.3829 1.7867 38 1 -2.5590 -10.8954 2.1052 39 1 -1.8613 -10.7011 0.4091 40 1 0.2855 -9.7785 1.3973 41 1 -0.4113 -9.9722 3.0937 42 1 -1.4131 -3.7480 -1.6336 43 1 -0.2151 -1.6281 -1.4266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338783925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:46 Heat of formation + Delta-G solvation = 36.685804 kcal Electronic energy + Delta-G solvation = -26005.488058 eV Core-core repulsion = 22401.586111 eV Total energy + Delta-G solvation = -3603.901947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74394 -40.41185 -39.14094 -37.94421 -36.05661 -34.85161 -33.74855 -31.75069 -31.45611 -31.42103 -30.54069 -26.85358 -24.70197 -23.65869 -23.43919 -23.31736 -22.79251 -21.80999 -20.81247 -19.45421 -19.07396 -18.52038 -17.96385 -17.08405 -16.77061 -16.28040 -16.04166 -15.75586 -15.53665 -15.37417 -15.21270 -14.79058 -14.49351 -14.22875 -13.97543 -13.88349 -13.77117 -13.57511 -13.25601 -12.87698 -12.78733 -12.48016 -12.44053 -12.37841 -11.99290 -11.90654 -11.79690 -11.58845 -11.40275 -11.19630 -10.97887 -10.64607 -10.16853 -9.82118 -9.46706 -9.39375 -8.71114 -8.52517 -6.30226 0.40209 0.49569 0.86120 1.13722 1.39123 1.48952 1.50981 1.64372 2.21380 2.25607 2.64262 2.81564 3.12368 3.25927 3.52885 3.69627 3.84715 4.00844 4.09431 4.13294 4.25999 4.37855 4.44761 4.53597 4.64445 4.72144 4.72709 4.90872 4.98484 5.07960 5.11491 5.13317 5.15110 5.18291 5.31542 5.41267 5.45148 5.57317 5.62046 5.65966 5.78311 5.80107 6.03913 6.10114 6.11515 6.22522 6.40516 6.67301 6.96577 7.01150 7.16656 7.69606 8.43302 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018092 B = 0.002954 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.290320 B = 9475.365836 C =10313.335862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.030 3.970 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.222 4.222 11 C -0.094 4.094 12 C 0.043 3.957 13 N -0.661 5.661 14 C 0.696 3.304 15 O -0.607 6.607 16 N -0.701 5.701 17 C 0.128 3.872 18 C -0.056 4.056 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.171 4.171 26 C -0.119 4.119 27 C -0.154 4.154 28 H 0.285 0.715 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.413 0.587 32 H 0.414 0.586 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 -19.464 2.326 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.535 4.535 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.242 4.242 11 C -0.114 4.114 12 C -0.051 4.051 13 N -0.310 5.310 14 C 0.397 3.603 15 O -0.485 6.485 16 N -0.357 5.357 17 C 0.039 3.961 18 C -0.058 4.058 19 C -0.139 4.139 20 C -0.136 4.136 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.139 4.139 24 C -0.160 4.160 25 C -0.209 4.209 26 C -0.140 4.140 27 C -0.175 4.175 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.250 0.750 32 H 0.251 0.749 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.142 0.858 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.474 -19.098 3.239 21.564 hybrid contribution 0.166 1.241 -0.774 1.471 sum -9.308 -17.858 2.465 20.288 Atomic orbital electron populations 1.69853 1.08644 1.30155 1.38334 1.26701 0.95725 1.04221 0.91533 0.85199 0.78561 0.75679 0.79874 1.18223 1.19234 1.18927 1.19692 0.95015 0.91424 1.47321 0.90955 1.17965 0.92925 0.92740 0.89298 1.20899 1.03273 0.94614 1.05440 1.20499 0.94243 0.97355 0.99343 1.17020 0.95033 0.85445 1.07596 1.41896 1.56688 1.18240 1.14150 1.16119 0.80188 0.80690 0.83282 1.90919 1.50072 1.76012 1.31488 1.44157 1.54827 1.23338 1.13405 1.18975 1.03013 0.87446 0.86649 1.19340 0.97109 0.94161 0.95168 1.21176 0.99561 1.00946 0.92262 1.21465 0.97360 0.95366 0.99407 1.21426 1.00647 0.95414 0.97468 1.21324 0.99554 1.00225 0.94604 1.20880 0.98440 0.95588 0.98993 1.23613 0.98699 0.89116 1.04526 1.23449 0.93161 1.01513 1.02814 1.20475 0.99772 0.91418 1.02287 1.20888 0.98858 0.96247 1.01462 0.90461 0.88908 0.87607 0.75043 0.74879 0.83192 0.82805 0.84043 0.86464 0.89107 0.85208 0.85772 0.89104 0.87514 0.85833 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.74 10.95 21.82 0.24 -45.50 16 2 C 0.03 1.60 5.31 85.23 0.45 2.05 16 3 Si 0.99 39.96 29.56 68.60 2.03 41.99 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.50 -28.45 9.03 23.39 0.21 -28.24 16 8 H 0.07 3.95 7.85 -2.91 -0.02 3.92 16 9 C 0.07 4.15 5.50 -21.27 -0.12 4.03 16 10 C -0.22 -12.04 9.74 22.48 0.22 -11.82 16 11 C -0.09 -4.73 8.61 22.13 0.19 -4.54 16 12 C 0.04 1.94 6.30 38.56 0.24 2.18 16 13 N -0.66 -22.72 5.31 -316.79 -1.68 -24.40 16 14 C 0.70 24.41 6.54 179.06 1.17 25.58 16 15 O -0.61 -27.32 13.03 -4.00 -0.05 -27.37 16 16 N -0.70 -17.16 4.92 -441.45 -2.17 -19.33 16 17 C 0.13 2.90 2.18 2.85 0.01 2.91 16 18 C -0.06 -1.50 5.44 -19.87 -0.11 -1.61 16 19 C -0.12 -2.52 8.72 22.27 0.19 -2.33 16 20 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 21 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 22 C -0.14 -4.02 10.05 22.27 0.22 -3.80 16 23 C -0.12 -3.84 8.67 22.27 0.19 -3.65 16 24 C -0.12 -1.58 9.77 30.62 0.30 -1.28 16 25 C -0.17 -3.39 9.77 30.62 0.30 -3.09 16 26 C -0.12 -5.46 9.90 22.14 0.22 -5.24 16 27 C -0.15 -8.23 8.57 22.48 0.19 -8.04 16 28 H 0.29 14.08 8.30 -92.71 -0.77 13.32 16 29 H 0.09 4.88 8.06 -2.91 -0.02 4.85 16 30 H 0.11 5.35 6.23 -2.91 -0.02 5.33 16 31 H 0.41 10.45 8.83 -92.71 -0.82 9.63 16 32 H 0.41 6.93 8.85 -92.71 -0.82 6.11 16 33 H 0.15 2.11 6.50 -2.91 -0.02 2.09 16 34 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 36 H 0.12 3.27 8.06 -2.91 -0.02 3.24 16 37 H 0.09 3.28 6.10 -2.91 -0.02 3.26 16 38 H 0.13 1.14 7.30 -2.39 -0.02 1.12 16 39 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 41 H 0.11 1.99 7.33 -2.39 -0.02 1.98 16 42 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.11 5.96 6.46 -2.91 -0.02 5.94 16 Total: -1.00 -74.28 359.60 2.12 -72.16 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -0.58 Total: 44.24 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 4.34 Total: -41.78 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -3.62 Total: -89.23 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.05 Total: -27.37 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -74.28 2.12 -72.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338783925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.844 kcal (2) G-P(sol) polarization free energy of solvation -74.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds