Wall clock time and date at job start Tue Mar 31 2020 13:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86801 * 119.99735 * 2 1 4 4 H 1.48497 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47020 * 300.00043 * 3 2 1 6 6 H 1.48500 * 109.46994 * 60.00136 * 3 2 1 7 7 C 1.39957 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99387 * 194.80788 * 7 2 1 9 9 C 1.41064 * 120.00173 * 14.80502 * 7 2 1 10 10 C 1.40738 * 120.30379 * 26.62454 * 9 7 2 11 11 C 1.36462 * 119.94387 * 180.29348 * 10 9 7 12 12 C 1.38869 * 120.57804 * 359.71058 * 11 10 9 13 13 C 1.38220 * 120.61389 * 0.02562 * 12 11 10 14 14 C 1.38647 * 120.03669 * 359.97438 * 13 12 11 15 15 N 1.39126 * 120.28419 * 180.02562 * 14 13 12 16 16 C 1.34779 * 120.00176 * 21.80476 * 15 14 13 17 17 O 1.21284 * 119.99541 * 5.37717 * 16 15 14 18 18 C 1.50700 * 119.99822 * 185.36759 * 16 15 14 19 19 N 1.46898 * 109.47027 * 187.52366 * 18 16 15 20 20 C 1.47917 * 110.99719 * 57.03325 * 19 18 16 21 21 C 1.54596 * 102.61967 * 149.18911 * 20 19 18 22 22 C 1.51573 * 102.85102 * 334.51123 * 21 20 19 23 23 C 1.37919 * 131.56537 * 196.09921 * 22 21 20 24 24 C 1.38307 * 120.07951 * 179.33623 * 23 22 21 25 25 C 1.38309 * 119.88442 * 0.02562 * 24 23 22 26 26 C 1.37906 * 120.26341 * 0.13151 * 25 24 23 27 27 C 1.38967 * 107.95580 * 15.76214 * 22 21 20 28 28 H 0.96998 * 120.00367 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.02557 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.71281 * 179.72277 * 11 10 9 31 31 H 1.07995 * 119.69337 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.98150 * 180.02562 * 13 12 11 33 33 H 0.97000 * 119.99666 * 201.80439 * 15 14 13 34 34 H 1.08998 * 109.46554 * 67.52823 * 18 16 15 35 35 H 1.08995 * 109.47361 * 307.52682 * 18 16 15 36 36 H 1.09000 * 110.78038 * 267.47238 * 20 19 18 37 37 H 1.09006 * 110.78167 * 30.71568 * 20 19 18 38 38 H 1.09000 * 110.74126 * 216.17170 * 21 20 19 39 39 H 1.08996 * 110.73902 * 92.85529 * 21 20 19 40 40 H 1.07994 * 119.95699 * 359.32366 * 23 22 21 41 41 H 1.07997 * 120.05797 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.86580 * 180.16643 * 25 24 23 43 43 H 1.08003 * 119.90229 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7024 1.3465 -0.0006 5 1 1.8837 2.3965 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0083 -1.2121 -0.0005 8 1 3.0614 -1.2276 0.2385 9 6 1.3382 -2.4133 -0.3132 10 6 0.1962 -2.3961 -1.1356 11 6 -0.4499 -3.5618 -1.4285 12 6 0.0125 -4.7712 -0.9266 13 6 1.1349 -4.8160 -0.1212 14 6 1.8110 -3.6470 0.1926 15 7 2.9417 -3.6861 1.0024 16 6 3.6412 -4.8313 1.1281 17 8 3.3440 -5.7997 0.4612 18 6 4.7929 -4.9081 2.0970 19 7 5.4976 -6.1848 1.9197 20 6 5.9645 -6.3431 0.5251 21 6 7.2474 -7.1893 0.6924 22 6 7.6875 -6.8588 2.1047 23 6 8.8880 -7.0475 2.7569 24 6 9.0362 -6.6359 4.0690 25 6 7.9781 -6.0350 4.7265 26 6 6.7746 -5.8470 4.0799 27 6 6.6166 -6.2611 2.7582 28 1 -0.4850 0.8400 0.0004 29 1 -0.1710 -1.4605 -1.5310 30 1 -1.3285 -3.5437 -2.0563 31 1 -0.5096 -5.6853 -1.1679 32 1 1.4859 -5.7623 0.2632 33 1 3.2264 -2.8893 1.4765 34 1 4.4145 -4.8407 3.1170 35 1 5.4811 -4.0840 1.9095 36 1 5.2248 -6.8762 -0.0722 37 1 6.1921 -5.3740 0.0810 38 1 8.0064 -6.8866 -0.0290 39 1 7.0242 -8.2519 0.5964 40 1 9.7131 -7.5174 2.2425 41 1 9.9763 -6.7842 4.5795 42 1 8.0951 -5.7113 5.7502 43 1 5.9524 -5.3767 4.5987 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339192320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:49 Heat of formation + Delta-G solvation = 33.651857 kcal Electronic energy + Delta-G solvation = -26031.536452 eV Core-core repulsion = 22427.502943 eV Total energy + Delta-G solvation = -3604.033509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.94867 -39.47038 -37.40103 -36.39451 -33.82195 -33.71459 -32.91443 -30.27322 -29.66458 -28.98210 -28.56384 -26.39270 -25.13103 -23.02925 -22.05974 -21.43929 -21.20737 -20.45953 -19.32975 -17.45642 -17.01020 -16.83707 -16.05498 -15.88013 -15.67218 -15.26600 -15.08128 -14.81289 -14.29085 -13.93093 -13.59437 -13.39874 -13.13867 -12.97899 -12.80417 -12.63271 -12.27306 -12.21403 -12.04252 -11.73447 -11.53285 -11.45239 -11.28054 -11.20907 -10.99736 -10.96732 -10.53593 -10.25162 -9.95406 -9.75194 -9.39057 -9.29873 -8.91348 -8.68985 -7.77499 -7.43156 -7.01223 -6.71328 -4.43428 1.25694 1.28210 2.53550 2.80699 3.00568 3.03914 3.17082 3.34237 3.43800 3.69400 3.83638 3.95474 4.47476 4.57391 4.62074 4.87094 4.89352 5.05730 5.12249 5.23167 5.29080 5.33901 5.39629 5.42469 5.63706 5.70426 5.80540 5.86100 6.04607 6.19428 6.33129 6.34672 6.42511 6.49784 6.59149 6.62238 6.79345 6.89144 7.01207 7.11642 7.15118 7.25605 7.59792 7.68301 7.93249 8.06869 8.08659 8.38332 8.51767 8.76639 8.77761 8.97212 10.10399 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.003208 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.329020 B = 8725.555222 C =10014.725721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.469 4.469 8 H 0.075 0.925 9 C 0.099 3.901 10 C -0.149 4.149 11 C -0.116 4.116 12 C -0.223 4.223 13 C -0.100 4.100 14 C 0.018 3.982 15 N -0.633 5.633 16 C 0.494 3.506 17 O -0.523 6.523 18 C 0.031 3.969 19 N -0.454 5.454 20 C 0.051 3.949 21 C -0.086 4.086 22 C -0.141 4.141 23 C -0.082 4.082 24 C -0.150 4.150 25 C -0.095 4.095 26 C -0.141 4.141 27 C 0.101 3.899 28 H 0.281 0.719 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.404 0.596 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.202 -6.387 6.158 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.499 4.499 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.169 4.169 11 C -0.135 4.135 12 C -0.243 4.243 13 C -0.120 4.120 14 C -0.076 4.076 15 N -0.275 5.275 16 C 0.280 3.720 17 O -0.400 6.400 18 C -0.099 4.099 19 N -0.167 5.167 20 C -0.074 4.074 21 C -0.123 4.123 22 C -0.144 4.144 23 C -0.100 4.100 24 C -0.169 4.169 25 C -0.113 4.113 26 C -0.162 4.162 27 C 0.002 3.998 28 H 0.092 0.908 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.140 0.860 33 H 0.240 0.760 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.345 -7.282 5.783 16.266 hybrid contribution 0.760 1.829 0.217 1.992 sum 14.106 -5.453 6.000 16.270 Atomic orbital electron populations 1.69821 1.07473 1.29144 1.35369 1.25849 0.94742 1.01149 0.92283 0.86279 0.80786 0.81099 0.78669 1.18530 1.19683 1.19961 1.19306 0.96659 0.90945 1.43040 0.90738 1.17357 0.92894 0.90396 0.89816 1.20896 0.98314 0.97031 1.00644 1.20485 0.98967 0.93444 1.00606 1.20345 1.00390 0.96340 1.07199 1.20924 0.94799 0.97111 0.99163 1.17767 0.91947 0.95206 1.02714 1.42895 1.26330 1.12296 1.45992 1.20182 0.83905 0.83809 0.84104 1.90594 1.67860 1.36263 1.45276 1.22217 0.95808 0.90658 1.01213 1.60216 1.20179 1.30520 1.05805 1.23359 0.96001 1.00104 0.87937 1.21365 0.96837 1.01126 0.92977 1.20553 0.93634 1.03425 0.96786 1.20370 0.95906 0.99229 0.94505 1.20961 0.99179 1.01971 0.94818 1.20862 0.92596 0.98358 0.99524 1.20490 0.98526 1.04250 0.92919 1.19753 0.88986 0.97264 0.93846 0.90838 0.86119 0.89424 0.89219 0.85971 0.76018 0.87360 0.91075 0.86888 0.92469 0.90174 0.89453 0.86255 0.86043 0.85826 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.54 10.92 55.55 0.61 -18.93 16 2 C 0.08 1.83 5.19 -17.32 -0.09 1.74 16 3 Si 0.91 17.62 29.59 -169.99 -5.03 12.59 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 7 C -0.47 -11.48 8.38 -37.87 -0.32 -11.79 16 8 H 0.07 1.70 7.08 -52.49 -0.37 1.33 16 9 C 0.10 2.52 5.57 -106.65 -0.59 1.93 16 10 C -0.15 -3.80 8.62 -39.28 -0.34 -4.14 16 11 C -0.12 -2.75 9.97 -39.99 -0.40 -3.15 16 12 C -0.22 -5.20 10.04 -39.35 -0.39 -5.60 16 13 C -0.10 -2.40 8.75 -39.44 -0.34 -2.74 16 14 C 0.02 0.42 6.51 -83.17 -0.54 -0.12 16 15 N -0.63 -12.53 5.15 -9.47 -0.05 -12.57 16 16 C 0.49 9.02 7.25 -10.98 -0.08 8.94 16 17 O -0.52 -11.02 11.42 5.55 0.06 -10.96 16 18 C 0.03 0.43 5.02 -4.98 -0.02 0.40 16 19 N -0.45 -6.60 4.90 -170.38 -0.84 -7.43 16 20 C 0.05 0.71 5.56 -2.42 -0.01 0.70 16 21 C -0.09 -0.97 7.03 -26.61 -0.19 -1.15 16 22 C -0.14 -1.71 6.23 -104.04 -0.65 -2.35 16 23 C -0.08 -0.84 10.03 -39.67 -0.40 -1.24 16 24 C -0.15 -1.42 10.06 -39.53 -0.40 -1.82 16 25 C -0.09 -0.93 10.02 -39.68 -0.40 -1.33 16 26 C -0.14 -1.61 9.54 -39.27 -0.37 -1.99 16 27 C 0.10 1.32 5.95 -83.41 -0.50 0.83 16 28 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 29 H 0.12 3.15 6.20 -52.49 -0.33 2.82 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.12 2.92 5.56 -52.48 -0.29 2.63 16 33 H 0.40 7.18 7.42 -40.82 -0.30 6.88 16 34 H 0.11 1.34 7.46 -51.93 -0.39 0.95 16 35 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 36 H 0.11 1.75 6.91 -51.93 -0.36 1.39 16 37 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 43 H 0.12 1.23 7.46 -52.48 -0.39 0.84 16 LS Contribution 351.95 15.07 5.30 5.30 Total: -1.00 -29.05 351.95 -11.33 -40.38 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -5.35 Total: 14.52 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -6.04 Total: -22.88 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.28 Total: -38.94 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.06 Total: -10.96 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.05 -11.33 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339192320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.028 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds