Wall clock time and date at job start Tue Mar 31 2020 13:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86801 * 119.99735 * 2 1 4 4 H 1.48497 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47020 * 300.00043 * 3 2 1 6 6 H 1.48500 * 109.46994 * 60.00136 * 3 2 1 7 7 C 1.39957 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99387 * 194.80788 * 7 2 1 9 9 C 1.41064 * 120.00173 * 14.80502 * 7 2 1 10 10 C 1.40738 * 120.30379 * 26.62454 * 9 7 2 11 11 C 1.36462 * 119.94387 * 180.29348 * 10 9 7 12 12 C 1.38869 * 120.57804 * 359.71058 * 11 10 9 13 13 C 1.38220 * 120.61389 * 0.02562 * 12 11 10 14 14 C 1.38647 * 120.03669 * 359.97438 * 13 12 11 15 15 N 1.39126 * 120.28419 * 180.02562 * 14 13 12 16 16 C 1.34779 * 120.00176 * 21.80476 * 15 14 13 17 17 O 1.21284 * 119.99541 * 5.37717 * 16 15 14 18 18 C 1.50700 * 119.99822 * 185.36759 * 16 15 14 19 19 N 1.46898 * 109.47027 * 187.52366 * 18 16 15 20 20 C 1.47917 * 110.99719 * 57.03325 * 19 18 16 21 21 C 1.54596 * 102.61967 * 149.18911 * 20 19 18 22 22 C 1.51573 * 102.85102 * 334.51123 * 21 20 19 23 23 C 1.37919 * 131.56537 * 196.09921 * 22 21 20 24 24 C 1.38307 * 120.07951 * 179.33623 * 23 22 21 25 25 C 1.38309 * 119.88442 * 0.02562 * 24 23 22 26 26 C 1.37906 * 120.26341 * 0.13151 * 25 24 23 27 27 C 1.38967 * 107.95580 * 15.76214 * 22 21 20 28 28 H 0.96998 * 120.00367 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.02557 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.71281 * 179.72277 * 11 10 9 31 31 H 1.07995 * 119.69337 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.98150 * 180.02562 * 13 12 11 33 33 H 0.97000 * 119.99666 * 201.80439 * 15 14 13 34 34 H 1.08998 * 109.46554 * 67.52823 * 18 16 15 35 35 H 1.08995 * 109.47361 * 307.52682 * 18 16 15 36 36 H 1.09000 * 110.78038 * 267.47238 * 20 19 18 37 37 H 1.09006 * 110.78167 * 30.71568 * 20 19 18 38 38 H 1.09000 * 110.74126 * 216.17170 * 21 20 19 39 39 H 1.08996 * 110.73902 * 92.85529 * 21 20 19 40 40 H 1.07994 * 119.95699 * 359.32366 * 23 22 21 41 41 H 1.07997 * 120.05797 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.86580 * 180.16643 * 25 24 23 43 43 H 1.08003 * 119.90229 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7024 1.3465 -0.0006 5 1 1.8837 2.3965 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0083 -1.2121 -0.0005 8 1 3.0614 -1.2276 0.2385 9 6 1.3382 -2.4133 -0.3132 10 6 0.1962 -2.3961 -1.1356 11 6 -0.4499 -3.5618 -1.4285 12 6 0.0125 -4.7712 -0.9266 13 6 1.1349 -4.8160 -0.1212 14 6 1.8110 -3.6470 0.1926 15 7 2.9417 -3.6861 1.0024 16 6 3.6412 -4.8313 1.1281 17 8 3.3440 -5.7997 0.4612 18 6 4.7929 -4.9081 2.0970 19 7 5.4976 -6.1848 1.9197 20 6 5.9645 -6.3431 0.5251 21 6 7.2474 -7.1893 0.6924 22 6 7.6875 -6.8588 2.1047 23 6 8.8880 -7.0475 2.7569 24 6 9.0362 -6.6359 4.0690 25 6 7.9781 -6.0350 4.7265 26 6 6.7746 -5.8470 4.0799 27 6 6.6166 -6.2611 2.7582 28 1 -0.4850 0.8400 0.0004 29 1 -0.1710 -1.4605 -1.5310 30 1 -1.3285 -3.5437 -2.0563 31 1 -0.5096 -5.6853 -1.1679 32 1 1.4859 -5.7623 0.2632 33 1 3.2264 -2.8893 1.4765 34 1 4.4145 -4.8407 3.1170 35 1 5.4811 -4.0840 1.9095 36 1 5.2248 -6.8762 -0.0722 37 1 6.1921 -5.3740 0.0810 38 1 8.0064 -6.8866 -0.0290 39 1 7.0242 -8.2519 0.5964 40 1 9.7131 -7.5174 2.2425 41 1 9.9763 -6.7842 4.5795 42 1 8.0951 -5.7113 5.7502 43 1 5.9524 -5.3767 4.5987 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339192320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:48 Heat of formation + Delta-G solvation = 18.562254 kcal Electronic energy + Delta-G solvation = -26032.190786 eV Core-core repulsion = 22427.502943 eV Total energy + Delta-G solvation = -3604.687843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00275 -40.92342 -39.01738 -37.43064 -35.53159 -35.48102 -33.87401 -31.54428 -31.30242 -30.17728 -29.79598 -27.72122 -26.84752 -23.93918 -23.60779 -22.82632 -22.22089 -21.84128 -20.88084 -19.24736 -18.41036 -18.15214 -17.31253 -17.13457 -16.75476 -16.60687 -16.19916 -16.08395 -15.95076 -15.18033 -14.76493 -14.68502 -14.55514 -14.40841 -13.99617 -13.92582 -13.75590 -13.49393 -13.28127 -13.11397 -12.93898 -12.81920 -12.72117 -12.47467 -12.24074 -12.13455 -11.94650 -11.74507 -11.54284 -11.15499 -11.06546 -10.98978 -10.29740 -9.70253 -9.33742 -8.82257 -8.70000 -8.50513 -6.30604 0.43328 0.48816 0.81184 1.04445 1.41733 1.52038 1.55405 1.80122 2.15026 2.20756 2.69021 2.76919 2.94745 3.55508 3.62811 3.73635 3.82133 3.99989 4.08990 4.18770 4.25070 4.28995 4.48400 4.52603 4.53929 4.63457 4.66345 4.77060 4.78637 4.95000 4.97489 5.04969 5.10294 5.21677 5.28457 5.36858 5.44332 5.54809 5.65635 5.75614 5.77681 5.81457 5.92272 6.12645 6.19261 6.24149 6.27260 6.64622 6.71938 6.94335 7.00154 7.35248 8.34885 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.003208 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.329020 B = 8725.555222 C =10014.725721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.489 4.489 8 H 0.084 0.916 9 C 0.071 3.929 10 C -0.174 4.174 11 C -0.122 4.122 12 C -0.229 4.229 13 C -0.115 4.115 14 C 0.015 3.985 15 N -0.634 5.634 16 C 0.496 3.504 17 O -0.551 6.551 18 C 0.042 3.958 19 N -0.471 5.471 20 C 0.050 3.950 21 C -0.078 4.078 22 C -0.155 4.155 23 C -0.087 4.087 24 C -0.146 4.146 25 C -0.097 4.097 26 C -0.150 4.150 27 C 0.072 3.928 28 H 0.288 0.712 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.413 0.587 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.757 -5.975 7.688 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.519 4.519 8 H 0.102 0.898 9 C 0.068 3.932 10 C -0.194 4.194 11 C -0.140 4.140 12 C -0.248 4.248 13 C -0.135 4.135 14 C -0.080 4.080 15 N -0.277 5.277 16 C 0.284 3.716 17 O -0.430 6.430 18 C -0.087 4.087 19 N -0.186 5.186 20 C -0.076 4.076 21 C -0.115 4.115 22 C -0.158 4.158 23 C -0.105 4.105 24 C -0.165 4.165 25 C -0.115 4.115 26 C -0.171 4.171 27 C -0.026 4.026 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.250 0.750 34 H 0.146 0.854 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.923 -6.886 7.337 18.836 hybrid contribution 0.005 1.610 -0.210 1.623 sum 15.928 -5.276 7.128 18.230 Atomic orbital electron populations 1.69885 1.09026 1.30472 1.35675 1.26706 0.95417 1.04342 0.91279 0.85160 0.79532 0.76375 0.78679 1.17798 1.19624 1.19152 1.19573 0.97185 0.91368 1.43755 0.89777 1.17700 0.93491 0.91558 0.90495 1.20939 0.99425 0.97166 1.01839 1.20710 0.99551 0.93026 1.00754 1.20635 1.00306 0.97139 1.06764 1.21079 0.95389 0.97181 0.99889 1.17907 0.92849 0.94679 1.02538 1.42905 1.25653 1.13392 1.45737 1.20924 0.84207 0.82588 0.83914 1.90577 1.68804 1.37150 1.46498 1.22159 0.94319 0.91669 1.00541 1.60249 1.21454 1.30664 1.06186 1.23247 0.96620 0.99974 0.87746 1.21313 0.95936 1.00727 0.93555 1.20753 0.94243 1.03878 0.96940 1.20699 0.95781 0.98982 0.95064 1.21379 1.00186 1.00411 0.94489 1.21230 0.91930 0.97694 1.00685 1.20742 0.99634 1.04325 0.92407 1.19914 0.88911 0.99187 0.94571 0.90164 0.87420 0.87217 0.87032 0.86167 0.74968 0.85391 0.89243 0.89454 0.93007 0.88357 0.89253 0.84086 0.83198 0.83238 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.21 10.92 21.83 0.24 -40.97 16 2 C 0.04 1.78 5.19 85.26 0.44 2.22 16 3 Si 0.98 35.66 29.59 68.60 2.03 37.69 16 4 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 5 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.49 -24.17 8.38 23.38 0.20 -23.97 16 8 H 0.08 3.84 7.08 -2.91 -0.02 3.82 16 9 C 0.07 3.72 5.57 -21.18 -0.12 3.60 16 10 C -0.17 -9.12 8.62 22.47 0.19 -8.92 16 11 C -0.12 -5.85 9.97 22.01 0.22 -5.63 16 12 C -0.23 -10.79 10.04 22.42 0.22 -10.57 16 13 C -0.12 -5.64 8.75 22.36 0.20 -5.45 16 14 C 0.02 0.74 6.51 38.88 0.25 0.99 16 15 N -0.63 -25.35 5.15 -302.27 -1.56 -26.91 16 16 C 0.50 18.28 7.25 87.66 0.64 18.92 16 17 O -0.55 -23.91 11.42 -3.04 -0.03 -23.94 16 18 C 0.04 1.16 5.02 85.56 0.43 1.59 16 19 N -0.47 -13.57 4.90 -692.95 -3.40 -16.97 16 20 C 0.05 1.40 5.56 86.65 0.48 1.88 16 21 C -0.08 -1.70 7.03 30.67 0.22 -1.49 16 22 C -0.16 -3.51 6.23 -19.49 -0.12 -3.63 16 23 C -0.09 -1.54 10.03 22.21 0.22 -1.32 16 24 C -0.15 -2.25 10.06 22.30 0.22 -2.02 16 25 C -0.10 -1.60 10.02 22.21 0.22 -1.37 16 26 C -0.15 -3.13 9.54 22.47 0.21 -2.92 16 27 C 0.07 1.81 5.95 38.28 0.23 2.04 16 28 H 0.29 13.02 8.30 -92.71 -0.77 12.25 16 29 H 0.11 5.84 6.20 -2.91 -0.02 5.82 16 30 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 32 H 0.12 5.90 5.56 -2.91 -0.02 5.88 16 33 H 0.41 14.68 7.42 -92.71 -0.69 13.99 16 34 H 0.13 2.99 7.46 -2.39 -0.02 2.97 16 35 H 0.09 2.13 8.13 -2.39 -0.02 2.11 16 36 H 0.09 2.86 6.91 -2.39 -0.02 2.84 16 37 H 0.05 1.45 7.87 -2.38 -0.02 1.43 16 38 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.13 2.37 7.46 -2.91 -0.02 2.34 16 Total: -1.00 -63.92 351.95 2.00 -61.93 By element: Atomic # 1 Polarization: 44.86 SS G_CDS: 0.36 Total: 45.22 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 4.36 Total: -36.05 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -4.71 Total: -84.84 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.03 Total: -23.94 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -63.92 2.00 -61.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339192320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.489 kcal (2) G-P(sol) polarization free energy of solvation -63.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds