Wall clock time and date at job start Tue Mar 31 2020 13:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 120.00162 * 2 1 4 4 H 1.48492 * 109.46944 * 270.00331 * 3 2 1 5 5 H 1.48501 * 109.46887 * 30.00263 * 3 2 1 6 6 H 1.48504 * 109.47136 * 150.00219 * 3 2 1 7 7 C 1.39952 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99777 * 195.57269 * 7 2 1 9 9 C 1.41391 * 120.00058 * 15.57255 * 7 2 1 10 10 C 1.40722 * 120.24270 * 206.03146 * 9 7 2 11 11 C 1.37609 * 119.74700 * 179.97438 * 10 9 7 12 12 C 1.38643 * 120.24815 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.74858 * 180.02562 * 12 11 10 14 14 N 1.46897 * 109.47236 * 90.00104 * 13 12 11 15 15 C 1.40033 * 111.00348 * 64.29361 * 14 13 12 16 16 C 1.39399 * 129.95336 * 283.42754 * 15 14 13 17 17 C 1.37915 * 120.19931 * 179.65789 * 16 15 14 18 18 C 1.38305 * 120.25905 * 0.02690 * 17 16 15 19 19 C 1.38305 * 119.88883 * 0.13039 * 18 17 16 20 20 C 1.37913 * 120.07695 * 359.97438 * 19 18 17 21 21 C 1.51575 * 131.56209 * 179.28173 * 20 19 18 22 22 C 1.47909 * 110.99717 * 184.26692 * 14 13 12 23 23 H 1.09008 * 110.77951 * 147.19758 * 22 14 13 24 24 C 1.50704 * 110.78142 * 23.76789 * 22 14 13 25 25 N 1.34770 * 120.00095 * 124.82828 * 24 22 14 26 26 O 1.21282 * 119.99855 * 304.82921 * 24 22 14 27 27 C 1.38635 * 120.49632 * 359.97438 * 12 11 10 28 28 C 1.37613 * 120.25556 * 0.02562 * 27 12 11 29 29 H 0.97002 * 120.00297 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.12408 * 359.97438 * 10 9 7 31 31 H 1.07992 * 119.87932 * 179.72142 * 11 10 9 32 32 H 1.09003 * 109.46684 * 209.99962 * 13 12 11 33 33 H 1.09000 * 109.47196 * 329.99455 * 13 12 11 34 34 H 1.08000 * 119.90136 * 359.62865 * 16 15 14 35 35 H 1.07997 * 119.87076 * 180.02562 * 17 16 15 36 36 H 1.08006 * 120.05645 * 180.10475 * 18 17 16 37 37 H 1.07998 * 119.95925 * 179.97438 * 19 18 17 38 38 H 1.09002 * 110.74286 * 314.68879 * 21 20 19 39 39 H 1.09003 * 110.73984 * 77.83388 * 21 20 19 40 40 H 0.97009 * 120.00361 * 0.02562 * 25 24 22 41 41 H 0.97004 * 120.00503 * 179.97438 * 25 24 22 42 42 H 1.08010 * 119.87003 * 180.02562 * 27 12 11 43 43 H 1.07998 * 120.12999 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0582 -1.2293 0.2505 9 6 1.3399 -2.4139 -0.3298 10 6 1.8096 -3.6445 0.1654 11 6 1.1513 -4.8079 -0.1610 12 6 0.0296 -4.7709 -0.9750 13 6 -0.6831 -6.0518 -1.3249 14 7 -1.7206 -6.3248 -0.3215 15 6 -2.7116 -5.3357 -0.3423 16 6 -2.6906 -4.0368 0.1634 17 6 -3.7931 -3.2201 0.0236 18 6 -4.9270 -3.6837 -0.6185 19 6 -4.9568 -4.9723 -1.1200 20 6 -3.8577 -5.7937 -0.9809 21 6 -3.6131 -7.2271 -1.4085 22 6 -2.3737 -7.6274 -0.5754 23 1 -2.6728 -8.0990 0.3608 24 6 -1.4676 -8.5346 -1.3672 25 7 -1.1611 -9.7594 -0.8957 26 8 -1.0141 -8.1625 -2.4287 27 6 -0.4420 -3.5642 -1.4685 28 6 0.2005 -2.3883 -1.1551 29 1 -0.4851 0.8400 0.0004 30 1 2.6835 -3.6756 0.7993 31 1 1.5126 -5.7540 0.2142 32 1 -1.1447 -5.9539 -2.3075 33 1 0.0330 -6.8735 -1.3402 34 1 -1.8086 -3.6691 0.6666 35 1 -3.7710 -2.2145 0.4170 36 1 -5.7879 -3.0407 -0.7276 37 1 -5.8417 -5.3356 -1.6212 38 1 -4.4668 -7.8562 -1.1566 39 1 -3.3980 -7.2802 -2.4758 40 1 -1.5240 -10.0572 -0.0468 41 1 -0.5781 -10.3435 -1.4055 42 1 -1.3170 -3.5470 -2.1015 43 1 -0.1689 -1.4494 -1.5403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342733242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:28 Heat of formation + Delta-G solvation = 32.282281 kcal Electronic energy + Delta-G solvation = -27110.912218 eV Core-core repulsion = 23506.819320 eV Total energy + Delta-G solvation = -3604.092898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25703 -38.98158 -37.49141 -36.09083 -34.02689 -33.72984 -32.17662 -30.25683 -29.49084 -29.10391 -28.64112 -26.25122 -24.21397 -23.50147 -21.23616 -21.19887 -20.68861 -20.29069 -19.69810 -17.46778 -17.23863 -17.10245 -16.11404 -15.90849 -15.32889 -15.20420 -14.68852 -14.45591 -14.00791 -13.66150 -13.52238 -13.38365 -13.18169 -12.88968 -12.64054 -12.58109 -12.30920 -11.89003 -11.84787 -11.48779 -11.42508 -11.23204 -11.06751 -10.92541 -10.55013 -10.49449 -10.34653 -9.97764 -9.76340 -9.40018 -9.36144 -9.13008 -8.90723 -8.41282 -7.59959 -7.34244 -7.20121 -6.70767 -4.31600 1.66257 1.80442 2.35222 2.78260 3.09036 3.12644 3.14636 3.20253 3.30323 3.95973 4.05185 4.19204 4.53736 4.67824 4.82615 4.86927 5.09546 5.28741 5.42211 5.53935 5.72309 5.77332 5.82685 5.84113 6.03827 6.12287 6.13344 6.37191 6.42091 6.44944 6.48271 6.63984 6.73215 6.84711 6.93766 7.00173 7.10578 7.12107 7.16237 7.30258 7.34305 7.43365 7.64702 7.68182 7.92460 8.10233 8.11029 8.20820 8.35116 8.69200 8.94183 9.02330 10.23193 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.004140 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.806236 B = 6761.977862 C = 8178.688212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.114 3.886 10 C -0.228 4.228 11 C -0.070 4.070 12 C -0.212 4.212 13 C 0.120 3.880 14 N -0.468 5.468 15 C 0.105 3.895 16 C -0.076 4.076 17 C -0.101 4.101 18 C -0.138 4.138 19 C -0.098 4.098 20 C -0.151 4.151 21 C -0.089 4.089 22 C 0.054 3.946 23 H 0.108 0.892 24 C 0.524 3.476 25 N -0.850 5.850 26 O -0.527 6.527 27 C -0.081 4.081 28 C -0.164 4.164 29 H 0.279 0.721 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.402 0.598 41 H 0.402 0.598 42 H 0.081 0.919 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.213 -12.980 0.401 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.112 3.888 10 C -0.248 4.248 11 C -0.089 4.089 12 C -0.214 4.214 13 C -0.003 4.003 14 N -0.187 5.187 15 C 0.009 3.991 16 C -0.096 4.096 17 C -0.120 4.120 18 C -0.157 4.157 19 C -0.117 4.117 20 C -0.154 4.154 21 C -0.128 4.128 22 C -0.057 4.057 23 H 0.126 0.874 24 C 0.308 3.692 25 N -0.414 5.414 26 O -0.402 6.402 27 C -0.100 4.100 28 C -0.184 4.184 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.231 0.769 41 H 0.233 0.767 42 H 0.099 0.901 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.889 -12.461 0.219 15.308 hybrid contribution 0.048 0.367 -0.364 0.520 sum -8.840 -12.094 -0.145 14.981 Atomic orbital electron populations 1.69810 1.07432 1.28980 1.35746 1.25866 0.94745 1.01095 0.92352 0.86343 0.80490 0.80804 0.79243 1.19378 1.20363 1.18717 1.19593 0.97283 0.91065 1.41389 0.90616 1.17613 0.91143 0.91933 0.88145 1.20970 1.03639 0.93084 1.07077 1.20315 0.95248 0.96253 0.97069 1.18946 1.00626 0.92779 1.09056 1.21201 0.91364 0.96778 0.90967 1.60802 1.11131 0.98382 1.48427 1.19387 0.90359 0.92872 0.96444 1.20780 0.98804 0.91045 0.98963 1.21003 0.92598 0.99618 0.98782 1.20965 0.98549 0.95436 1.00706 1.20187 0.96916 0.93727 1.00862 1.20777 0.96770 0.96137 1.01718 1.21508 0.96905 0.93607 1.00751 1.22710 0.92993 0.91573 0.98407 0.87442 1.20358 0.80842 0.82164 0.85885 1.43860 1.53525 1.17476 1.26568 1.90820 1.52862 1.73531 1.22961 1.20514 0.97668 0.92751 0.99114 1.21251 0.99226 0.96464 1.01420 0.91021 0.89180 0.89757 0.93704 0.90491 0.84737 0.85603 0.86319 0.86883 0.89724 0.89459 0.76930 0.76749 0.90079 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.30 10.93 55.55 0.61 -19.69 16 2 C 0.08 1.93 5.18 -17.34 -0.09 1.84 16 3 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.36 9.06 -37.74 -0.34 -12.70 16 8 H 0.08 1.96 7.89 -52.49 -0.41 1.54 16 9 C 0.11 3.05 5.56 -106.82 -0.59 2.46 16 10 C -0.23 -5.69 9.80 -38.87 -0.38 -6.07 16 11 C -0.07 -1.62 9.67 -39.66 -0.38 -2.00 16 12 C -0.21 -4.80 4.51 -104.33 -0.47 -5.27 16 13 C 0.12 2.38 3.52 -4.98 -0.02 2.37 16 14 N -0.47 -8.20 5.09 -164.22 -0.84 -9.03 16 15 C 0.11 1.89 5.08 -83.41 -0.42 1.47 16 16 C -0.08 -1.46 7.40 -39.27 -0.29 -1.75 16 17 C -0.10 -1.70 10.02 -39.68 -0.40 -2.10 16 18 C -0.14 -2.00 10.06 -39.53 -0.40 -2.39 16 19 C -0.10 -1.39 10.03 -39.68 -0.40 -1.79 16 20 C -0.15 -2.35 6.23 -104.04 -0.65 -3.00 16 21 C -0.09 -1.16 6.47 -26.61 -0.17 -1.33 16 22 C 0.05 0.72 3.82 -67.46 -0.26 0.46 16 23 H 0.11 1.13 7.98 -51.92 -0.41 0.71 16 24 C 0.52 6.82 6.18 -10.99 -0.07 6.75 16 25 N -0.85 -6.95 8.87 31.22 0.28 -6.67 16 26 O -0.53 -9.03 13.90 5.56 0.08 -8.95 16 27 C -0.08 -1.94 6.64 -39.66 -0.26 -2.20 16 28 C -0.16 -4.27 8.68 -38.87 -0.34 -4.61 16 29 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 30 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.08 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.04 0.96 7.30 -51.93 -0.38 0.58 16 33 H 0.08 1.54 5.86 -51.93 -0.30 1.23 16 34 H 0.13 2.97 7.10 -52.49 -0.37 2.60 16 35 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 37 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.23 7.63 -51.93 -0.40 0.84 16 40 H 0.40 2.03 8.71 -40.82 -0.36 1.68 16 41 H 0.40 2.82 8.93 -40.82 -0.36 2.46 16 42 H 0.08 1.89 7.82 -52.48 -0.41 1.48 16 43 H 0.12 3.15 6.19 -52.49 -0.33 2.83 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -30.56 349.73 -10.97 -41.53 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -5.41 Total: 13.63 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -5.93 Total: -29.87 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.05 Total: -35.40 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.56 -10.97 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342733242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.816 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds