Wall clock time and date at job start Tue Mar 31 2020 13:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86798 * 120.00412 * 2 1 4 4 H 1.48497 * 109.47118 * 239.99562 * 3 2 1 5 5 H 1.48495 * 109.47039 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47005 * 119.99871 * 3 2 1 7 7 C 1.39949 * 119.99464 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99680 * 197.85655 * 7 2 1 9 9 C 1.41394 * 120.00007 * 17.85931 * 7 2 1 10 10 C 1.40709 * 120.24523 * 24.38534 * 9 7 2 11 11 C 1.37624 * 119.74312 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24952 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.74831 * 180.02562 * 12 11 10 14 14 N 1.46901 * 109.47081 * 90.00357 * 13 12 11 15 15 C 1.40033 * 111.00205 * 50.01354 * 14 13 12 16 16 C 1.39405 * 129.94946 * 283.70879 * 15 14 13 17 17 C 1.37911 * 120.19959 * 179.24889 * 16 15 14 18 18 C 1.38306 * 120.26233 * 0.57776 * 17 16 15 19 19 C 1.38303 * 119.88124 * 359.61122 * 18 17 16 20 20 C 1.37915 * 120.08391 * 0.15651 * 19 18 17 21 21 C 1.51572 * 131.56616 * 179.62392 * 20 19 18 22 22 C 1.47906 * 110.99706 * 170.00133 * 14 13 12 23 23 H 1.08997 * 110.78270 * 23.70799 * 22 14 13 24 24 C 1.50701 * 110.94165 * 147.07201 * 22 14 13 25 25 N 1.34771 * 120.00006 * 174.75385 * 24 22 14 26 26 O 1.21284 * 119.99769 * 354.74805 * 24 22 14 27 27 C 1.38636 * 120.50151 * 0.29848 * 12 11 10 28 28 C 1.37623 * 120.24662 * 359.44991 * 27 12 11 29 29 H 0.97000 * 119.99455 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.12668 * 0.02562 * 10 9 7 31 31 H 1.07996 * 119.87581 * 180.02562 * 11 10 9 32 32 H 1.08997 * 109.46932 * 330.00116 * 13 12 11 33 33 H 1.09001 * 109.46994 * 210.00222 * 13 12 11 34 34 H 1.08002 * 119.89743 * 359.53482 * 16 15 14 35 35 H 1.07997 * 119.86836 * 180.31449 * 17 16 15 36 36 H 1.07993 * 120.05407 * 179.89487 * 18 17 16 37 37 H 1.07998 * 119.95406 * 180.18145 * 19 18 17 38 38 H 1.08997 * 110.74674 * 314.59540 * 21 20 19 39 39 H 1.09010 * 110.73758 * 77.73643 * 21 20 19 40 40 H 0.97003 * 120.00226 * 359.97438 * 25 24 22 41 41 H 0.97010 * 119.99839 * 179.97438 * 25 24 22 42 42 H 1.07995 * 119.87775 * 179.70163 * 27 12 11 43 43 H 1.07995 * 120.13081 * 180.27521 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0962 1.6962 -1.2124 5 1 1.2774 2.7464 -0.0006 6 1 3.0960 1.6962 1.2125 7 6 2.0079 -1.2121 0.0005 8 1 3.0489 -1.2345 0.2874 9 6 1.3519 -2.4072 -0.3745 10 6 0.2207 -2.3626 -1.2102 11 6 -0.4101 -3.5322 -1.5683 12 6 0.0653 -4.7509 -1.1093 13 6 -0.6339 -6.0247 -1.5090 14 7 -0.0427 -6.5386 -2.7517 15 6 1.3533 -6.5952 -2.6575 16 6 2.2977 -5.5724 -2.7309 17 6 3.6403 -5.8568 -2.5947 18 6 4.0602 -7.1596 -2.3963 19 6 3.1297 -8.1803 -2.3262 20 6 1.7855 -7.9007 -2.4570 21 6 0.5644 -8.7982 -2.4310 22 6 -0.5338 -7.9019 -3.0481 23 1 -1.4948 -8.0802 -2.5657 24 6 -0.6344 -8.1268 -4.5348 25 7 -0.9624 -9.3439 -5.0116 26 8 -0.4203 -7.2124 -5.3023 27 6 1.1755 -4.8063 -0.2809 28 6 1.8252 -3.6499 0.0858 29 1 -0.4849 0.8401 -0.0004 30 1 -0.1510 -1.4143 -1.5691 31 1 -1.2782 -3.5005 -2.2100 32 1 -1.6934 -5.8235 -1.6667 33 1 -0.5186 -6.7659 -0.7182 34 1 1.9766 -4.5537 -2.8902 35 1 4.3670 -5.0596 -2.6474 36 1 5.1125 -7.3787 -2.2918 37 1 3.4561 -9.1977 -2.1684 38 1 0.7254 -9.6869 -3.0411 39 1 0.3107 -9.0752 -1.4077 40 1 -1.1334 -10.0753 -4.3977 41 1 -1.0275 -9.4886 -5.9686 42 1 1.5344 -5.7609 0.0746 43 1 2.6926 -3.6956 0.7276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342733253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:30 Heat of formation + Delta-G solvation = 7.364611 kcal Electronic energy + Delta-G solvation = -26999.103737 eV Core-core repulsion = 23393.930327 eV Total energy + Delta-G solvation = -3605.173409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.23473 -39.96402 -39.22934 -37.49704 -35.75475 -34.72300 -33.44779 -31.87843 -31.07651 -30.55190 -29.94310 -27.92356 -25.65386 -24.78611 -22.88322 -22.73327 -22.20599 -21.33142 -21.10348 -19.21941 -18.62322 -17.83179 -17.27482 -17.16170 -16.60285 -16.51295 -15.94406 -15.82724 -15.49004 -15.43948 -15.21600 -14.82253 -14.40344 -14.24744 -14.07416 -13.85343 -13.81296 -13.40329 -13.39019 -13.03312 -12.76578 -12.72799 -12.66884 -12.47558 -12.15878 -12.09791 -11.77051 -11.44594 -11.25109 -11.00057 -10.93117 -10.60048 -10.23918 -9.67296 -9.33559 -9.11227 -8.69069 -8.62911 -6.33071 0.48690 0.59983 0.94308 1.19826 1.35678 1.46667 1.50922 1.68090 2.19121 2.34232 2.72371 2.89146 3.01370 3.60513 3.73929 3.83260 3.99129 4.15339 4.18023 4.27383 4.32108 4.33131 4.50188 4.57203 4.61537 4.65578 4.72947 4.78824 4.89006 4.97089 5.06208 5.15574 5.21456 5.38637 5.46729 5.54667 5.59237 5.71016 5.72054 5.89725 5.95438 5.99342 6.07761 6.11541 6.27210 6.39732 6.43931 6.58659 6.71536 6.94974 7.05127 7.45283 8.32546 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.003678 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.449552 B = 7610.141685 C = 8325.533681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.503 4.503 8 H 0.073 0.927 9 C 0.089 3.911 10 C -0.193 4.193 11 C -0.086 4.086 12 C -0.205 4.205 13 C 0.129 3.871 14 N -0.494 5.494 15 C 0.098 3.902 16 C -0.105 4.105 17 C -0.120 4.120 18 C -0.137 4.137 19 C -0.093 4.093 20 C -0.163 4.163 21 C -0.082 4.082 22 C 0.052 3.948 23 H 0.149 0.851 24 C 0.523 3.477 25 N -0.832 5.832 26 O -0.579 6.579 27 C -0.055 4.055 28 C -0.238 4.238 29 H 0.287 0.713 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.420 0.580 41 H 0.408 0.592 42 H 0.100 0.900 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 -21.174 -3.756 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.532 4.532 8 H 0.092 0.908 9 C 0.087 3.913 10 C -0.213 4.213 11 C -0.104 4.104 12 C -0.206 4.206 13 C 0.005 3.995 14 N -0.211 5.211 15 C 0.002 3.998 16 C -0.126 4.126 17 C -0.138 4.138 18 C -0.155 4.155 19 C -0.111 4.111 20 C -0.166 4.166 21 C -0.120 4.120 22 C -0.059 4.059 23 H 0.166 0.834 24 C 0.307 3.693 25 N -0.398 5.398 26 O -0.457 6.457 27 C -0.074 4.074 28 C -0.257 4.257 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.252 0.748 41 H 0.240 0.760 42 H 0.118 0.882 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.471 -19.976 -4.456 20.473 hybrid contribution 0.320 0.868 0.349 0.989 sum -0.151 -19.109 -4.107 19.546 Atomic orbital electron populations 1.69882 1.08990 1.30495 1.35638 1.26736 0.95464 1.04441 0.91237 0.85301 0.78864 0.75839 0.80015 1.18799 1.19110 1.18139 1.19817 0.98310 0.92701 1.42387 0.90836 1.17869 0.91568 0.92962 0.88921 1.21197 1.00545 0.96787 1.02738 1.20681 0.98546 0.92788 0.98423 1.19120 1.01111 0.93566 1.06817 1.20855 0.97614 0.93234 0.87760 1.59776 1.03808 1.22960 1.34597 1.19377 0.88869 0.94002 0.97575 1.20491 0.92983 0.97504 1.01577 1.21046 0.94449 0.98064 1.00290 1.21271 1.00697 0.91754 1.01807 1.20627 0.90540 1.00346 0.99583 1.21296 0.96200 0.94913 1.04164 1.21662 0.89105 0.97303 1.03917 1.22686 1.02294 0.87836 0.93063 0.83370 1.20592 0.75127 0.82825 0.90764 1.43558 1.72543 1.11157 1.12526 1.90762 1.50285 1.44451 1.60217 1.20396 0.94466 0.96004 0.96510 1.21007 1.04090 0.93080 1.07543 0.90223 0.88738 0.88748 0.89877 0.92459 0.90095 0.86160 0.83413 0.83051 0.86642 0.86589 0.74834 0.76015 0.88228 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.77 10.95 21.83 0.24 -44.53 16 2 C 0.04 1.89 5.14 85.26 0.44 2.33 16 3 Si 0.98 39.79 29.60 68.60 2.03 41.82 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -28.17 9.05 23.46 0.21 -27.96 16 8 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.09 4.99 5.58 -21.29 -0.12 4.87 16 10 C -0.19 -10.71 8.70 22.73 0.20 -10.51 16 11 C -0.09 -4.20 9.67 22.22 0.21 -3.99 16 12 C -0.20 -8.84 3.74 -19.67 -0.07 -8.91 16 13 C 0.13 4.30 5.08 85.56 0.43 4.74 16 14 N -0.49 -16.47 4.44 -673.48 -2.99 -19.46 16 15 C 0.10 3.43 4.70 38.29 0.18 3.61 16 16 C -0.11 -4.22 7.16 22.47 0.16 -4.05 16 17 C -0.12 -4.06 10.02 22.21 0.22 -3.84 16 18 C -0.14 -3.63 10.06 22.30 0.22 -3.40 16 19 C -0.09 -2.20 10.03 22.21 0.22 -1.98 16 20 C -0.16 -4.34 6.22 -19.49 -0.12 -4.46 16 21 C -0.08 -1.39 6.43 30.67 0.20 -1.19 16 22 C 0.05 1.15 3.07 44.52 0.14 1.29 16 23 H 0.15 2.24 7.79 -2.39 -0.02 2.22 16 24 C 0.52 12.94 7.42 87.66 0.65 13.59 16 25 N -0.83 -10.30 8.60 -173.53 -1.49 -11.79 16 26 O -0.58 -22.13 17.36 -3.04 -0.05 -22.18 16 27 C -0.06 -2.44 6.89 22.22 0.15 -2.28 16 28 C -0.24 -11.99 9.80 22.73 0.22 -11.76 16 29 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 30 H 0.09 5.55 6.16 -2.91 -0.02 5.53 16 31 H 0.09 4.39 8.06 -2.91 -0.02 4.36 16 32 H 0.08 2.59 8.08 -2.39 -0.02 2.57 16 33 H 0.06 1.63 7.97 -2.39 -0.02 1.61 16 34 H 0.08 3.90 7.49 -2.91 -0.02 3.88 16 35 H 0.12 3.91 8.06 -2.91 -0.02 3.88 16 36 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 37 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.12 1.23 7.51 -2.39 -0.02 1.21 16 39 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.42 1.62 8.64 -92.71 -0.80 0.82 16 41 H 0.41 4.53 8.93 -92.70 -0.83 3.70 16 42 H 0.10 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -77.27 356.28 0.72 -76.55 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.57 Total: 33.51 kcal Atomic # 6 Polarization: -57.47 SS G_CDS: 3.56 Total: -53.91 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -4.24 Total: -75.79 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -77.27 0.72 -76.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342733253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.918 kcal (2) G-P(sol) polarization free energy of solvation -77.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds