Wall clock time and date at job start Tue Mar 31 2020 13:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99769 * 2 1 4 4 H 1.48500 * 109.46813 * 269.99555 * 3 2 1 5 5 H 1.48496 * 109.47022 * 29.99579 * 3 2 1 6 6 H 1.48498 * 109.46909 * 149.99826 * 3 2 1 7 7 C 1.37875 * 120.00675 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99285 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00407 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47059 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.46823 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99766 * 180.27592 * 11 10 9 13 13 O 1.21589 * 120.00204 * 359.71861 * 12 11 10 14 14 N 1.34776 * 119.99994 * 179.72751 * 12 11 10 15 15 C 1.39847 * 119.99917 * 175.38828 * 14 12 11 16 16 C 1.38997 * 120.02924 * 214.82209 * 15 14 12 17 17 C 1.37757 * 120.18841 * 179.71207 * 16 15 14 18 18 C 1.39704 * 120.05611 * 0.61078 * 17 16 15 19 19 C 1.39275 * 119.46389 * 359.64521 * 18 17 16 20 20 C 1.37749 * 120.36297 * 0.04741 * 19 18 17 21 21 C 1.50920 * 107.53428 * 180.02562 * 19 18 17 22 22 C 1.50901 * 106.03981 * 0.02562 * 21 19 18 23 23 C 1.37846 * 132.17700 * 179.97438 * 22 21 19 24 24 C 1.38405 * 120.03873 * 180.02562 * 23 22 21 25 25 C 1.38302 * 120.09686 * 359.97438 * 24 23 22 26 26 C 1.37959 * 120.26275 * 359.97438 * 25 24 23 27 27 C 1.39253 * 107.53315 * 359.97438 * 22 21 19 28 28 H 0.97004 * 120.00523 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47143 * 60.00163 * 9 7 2 30 30 H 1.09001 * 109.47227 * 299.99723 * 9 7 2 31 31 H 1.08997 * 109.47165 * 59.99986 * 10 9 7 32 32 H 1.09001 * 109.46719 * 299.99844 * 10 9 7 33 33 H 0.96999 * 120.00271 * 359.97438 * 11 10 9 34 34 H 0.96997 * 120.00476 * 355.37894 * 14 12 11 35 35 H 1.08004 * 119.90379 * 359.97438 * 16 15 14 36 36 H 1.07998 * 119.97141 * 180.25629 * 17 16 15 37 37 H 1.08002 * 120.00984 * 179.97438 * 20 19 18 38 38 H 1.09007 * 110.13678 * 119.14055 * 21 19 18 39 39 H 1.08996 * 110.14433 * 240.85601 * 21 19 18 40 40 H 1.08002 * 119.98520 * 0.02562 * 23 22 21 41 41 H 1.08004 * 119.95092 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.86877 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.02628 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 7 5.4866 -2.6363 0.0022 12 6 6.1605 -3.8035 -0.0033 13 8 5.5527 -4.8565 -0.0041 14 7 7.5083 -3.8034 -0.0078 15 6 8.2079 -5.0108 0.0839 16 6 9.4135 -5.0656 0.7734 17 6 10.1024 -6.2545 0.8708 18 6 9.5972 -7.4076 0.2652 19 6 8.3912 -7.3447 -0.4287 20 6 7.7011 -6.1560 -0.5192 21 6 8.1033 -8.7253 -0.9661 22 6 9.2530 -9.5947 -0.5195 23 6 9.5314 -10.9311 -0.7106 24 6 10.6836 -11.4820 -0.1772 25 6 11.5581 -10.6932 0.5480 26 6 11.2881 -9.3545 0.7434 27 6 10.1273 -8.7923 0.2092 28 1 -0.4851 0.8400 -0.0004 29 1 3.8745 -0.6799 0.8911 30 1 3.8752 -0.6803 -0.8889 31 1 3.6587 -3.1501 -0.8892 32 1 3.6580 -3.1504 0.8908 33 1 5.9715 -1.7962 0.0025 34 1 7.9931 -2.9659 -0.0747 35 1 9.8092 -4.1743 1.2377 36 1 11.0368 -6.2939 1.4109 37 1 6.7667 -6.1136 -1.0591 38 1 7.1669 -9.1009 -0.5535 39 1 8.0515 -8.7011 -2.0546 40 1 8.8501 -11.5488 -1.2769 41 1 10.9002 -12.5294 -0.3274 42 1 12.4559 -11.1270 0.9630 43 1 11.9738 -8.7420 1.3100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344887024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:39 Heat of formation + Delta-G solvation = 4.534696 kcal Electronic energy + Delta-G solvation = -24734.948944 eV Core-core repulsion = 21129.652821 eV Total energy + Delta-G solvation = -3605.296124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00907 -41.17978 -39.13068 -36.93644 -36.24948 -34.89575 -34.40948 -32.62549 -31.80205 -31.42908 -29.05349 -27.91461 -26.77784 -24.73932 -22.85839 -22.64338 -22.38677 -22.00843 -21.52218 -19.55769 -18.92628 -18.26041 -17.88692 -16.95001 -16.65822 -16.46702 -16.18564 -15.84891 -15.73541 -15.44153 -15.35491 -15.22552 -14.82263 -14.63576 -14.54792 -14.09830 -13.82046 -13.47933 -13.35537 -13.17831 -13.11031 -13.03911 -12.28175 -12.21812 -12.18814 -12.06335 -11.76400 -11.71841 -11.59380 -11.48051 -11.12796 -10.78628 -10.26910 -9.95127 -9.91604 -9.56974 -8.63606 -8.29540 -6.37048 -0.31888 0.39444 0.46229 0.88149 1.39544 1.42360 1.53080 1.54249 2.00151 2.37179 2.63009 3.05553 3.08217 3.12031 3.36756 3.54067 3.80328 3.99129 4.09876 4.20925 4.30923 4.32797 4.41789 4.43803 4.45754 4.58055 4.60969 4.73189 4.74467 4.76942 4.92660 4.98715 5.07197 5.13150 5.23778 5.28407 5.40140 5.41407 5.43558 5.52679 5.57240 5.59978 5.64247 5.80033 5.94405 6.00980 6.07956 6.22843 6.70277 6.98289 7.27305 7.44064 8.87162 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.035574 B = 0.001959 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.894923 B =14288.805379 C =14932.596241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.235 1.235 7 C -0.539 4.539 8 H 0.028 0.972 9 C -0.012 4.012 10 C 0.164 3.836 11 N -0.723 5.723 12 C 0.697 3.303 13 O -0.618 6.618 14 N -0.669 5.669 15 C 0.162 3.838 16 C -0.139 4.139 17 C -0.075 4.075 18 C -0.093 4.093 19 C -0.089 4.089 20 C -0.127 4.127 21 C -0.046 4.046 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.106 4.106 27 C -0.074 4.074 28 H 0.268 0.732 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.414 0.586 34 H 0.427 0.573 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.140 0.860 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.989 -16.191 0.302 34.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.158 1.158 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.050 4.050 10 C 0.039 3.961 11 N -0.378 5.378 12 C 0.397 3.603 13 O -0.498 6.498 14 N -0.319 5.319 15 C 0.066 3.934 16 C -0.160 4.160 17 C -0.093 4.093 18 C -0.093 4.093 19 C -0.089 4.089 20 C -0.147 4.147 21 C -0.082 4.082 22 C -0.109 4.109 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.124 4.124 27 C -0.074 4.074 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.250 0.750 34 H 0.266 0.734 35 H 0.180 0.820 36 H 0.173 0.827 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.158 0.842 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 30.207 -16.940 0.312 34.634 hybrid contribution -0.524 1.448 -0.159 1.548 sum 29.683 -15.492 0.153 33.483 Atomic orbital electron populations 1.70076 1.08613 1.28421 1.51943 1.26092 0.95697 1.03912 0.93692 0.85527 0.79703 0.77260 0.79295 1.19030 1.21389 1.15799 1.21244 0.91594 0.93377 1.51579 0.95314 1.19652 0.94342 0.92747 0.98242 1.20938 0.76632 0.98466 1.00037 1.45113 1.07488 1.07066 1.78115 1.16134 0.81951 0.84416 0.77782 1.90904 1.68603 1.31729 1.58546 1.42323 1.03953 1.09087 1.76488 1.17603 0.93158 0.85472 0.97124 1.21009 0.94806 0.99950 1.00192 1.20932 1.00309 0.90050 0.98004 1.19490 0.95702 0.93161 1.00992 1.20285 0.95256 0.94767 0.98617 1.20449 1.00759 0.91819 1.01703 1.19548 0.97534 0.89111 1.01962 1.20486 0.96518 0.94694 0.99173 1.20704 0.98563 0.92801 1.00867 1.21519 0.93636 1.01204 0.97134 1.21381 1.00643 0.93146 0.98998 1.21153 0.95704 0.96029 0.99523 1.19419 0.96225 0.91924 0.99812 0.92352 0.94310 0.94429 0.93737 0.93865 0.74981 0.73412 0.82014 0.82681 0.86462 0.88327 0.87484 0.84249 0.83032 0.83060 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 2 C 0.00 0.18 5.47 84.65 0.46 0.64 16 3 Si 0.96 41.77 27.47 68.60 1.88 43.66 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.24 -8.98 6.54 99.48 0.65 -8.33 16 7 C -0.54 -30.57 9.66 25.60 0.25 -30.32 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.52 4.16 29.85 0.12 -0.40 16 10 C 0.16 6.58 5.61 86.38 0.48 7.07 16 11 N -0.72 -22.04 5.56 -478.53 -2.66 -24.70 16 12 C 0.70 22.45 8.41 179.05 1.51 23.95 16 13 O -0.62 -25.70 13.77 -4.00 -0.06 -25.76 16 14 N -0.67 -15.43 5.34 -317.05 -1.69 -17.12 16 15 C 0.16 4.01 6.30 38.23 0.24 4.25 16 16 C -0.14 -2.56 9.94 22.34 0.22 -2.34 16 17 C -0.07 -1.37 10.08 22.51 0.23 -1.14 16 18 C -0.09 -2.13 6.20 -19.97 -0.12 -2.25 16 19 C -0.09 -2.31 6.30 -19.66 -0.12 -2.44 16 20 C -0.13 -3.71 8.68 22.34 0.19 -3.51 16 21 C -0.05 -1.01 6.71 29.24 0.20 -0.81 16 22 C -0.11 -2.24 6.30 -19.65 -0.12 -2.37 16 23 C -0.11 -1.78 10.04 22.22 0.22 -1.56 16 24 C -0.12 -1.49 10.05 22.32 0.22 -1.27 16 25 C -0.12 -1.56 10.02 22.22 0.22 -1.34 16 26 C -0.11 -1.69 10.09 22.53 0.23 -1.46 16 27 C -0.07 -1.55 6.20 -20.00 -0.12 -1.68 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 30 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.41 9.30 8.49 -92.71 -0.79 8.52 16 34 H 0.43 6.10 8.84 -92.71 -0.82 5.28 16 35 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.12 4.05 6.22 -2.91 -0.02 4.03 16 38 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 42 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 43 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -77.50 362.61 1.47 -76.02 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.61 Total: 23.67 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 4.31 Total: -16.97 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -4.05 Total: -100.63 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.06 Total: -25.76 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.66 kcal Total: -77.50 1.47 -76.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344887024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.559 kcal (2) G-P(sol) polarization free energy of solvation -77.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds