Wall clock time and date at job start Tue Mar 31 2020 13:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.46871 * 35.00433 * 12 11 10 14 14 C 1.50696 * 109.46865 * 155.00158 * 12 11 10 15 15 C 1.33997 * 124.92329 * 220.00070 * 14 12 11 16 16 C 1.46782 * 106.18909 * 179.97438 * 15 14 12 17 17 C 1.39408 * 134.37572 * 180.02562 * 16 15 14 18 18 C 1.36742 * 119.71599 * 179.97438 * 17 16 15 19 19 C 1.38740 * 120.41677 * 0.02562 * 18 17 16 20 20 C 1.37838 * 120.68721 * 359.97438 * 19 18 17 21 21 C 1.38942 * 119.81822 * 359.97438 * 20 19 18 22 22 O 1.34450 * 124.92767 * 39.69980 * 14 12 11 23 23 C 1.50702 * 109.47191 * 274.99973 * 12 11 10 24 24 C 1.38667 * 120.41596 * 140.00037 * 23 12 11 25 25 C 1.38628 * 118.42027 * 180.02562 * 24 23 12 26 26 C 1.38228 * 119.16201 * 359.97438 * 25 24 23 27 27 N 1.31857 * 120.76032 * 359.97438 * 26 25 24 28 28 C 1.31879 * 121.72607 * 359.71036 * 27 26 25 29 29 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 31 31 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 32 32 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 33 33 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 34 34 H 1.00899 * 111.00283 * 303.95539 * 11 10 9 35 35 H 1.08002 * 126.90516 * 359.95326 * 15 14 12 36 36 H 1.07996 * 120.13803 * 359.95064 * 17 16 15 37 37 H 1.07998 * 119.78547 * 179.97438 * 18 17 16 38 38 H 1.08006 * 119.65405 * 179.97438 * 19 18 17 39 39 H 1.08006 * 120.09309 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.79288 * 359.97438 * 24 23 12 41 41 H 1.08003 * 120.42087 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.62091 * 179.97438 * 26 25 24 43 43 H 1.07999 * 119.62036 * 180.30420 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4354 -6.0759 0.0018 13 1 3.3182 -5.8281 0.5912 14 6 1.7507 -7.2763 0.6028 15 6 2.3311 -8.1559 1.4304 16 6 1.3008 -9.1476 1.7614 17 6 1.2688 -10.2918 2.5573 18 6 0.1135 -11.0167 2.6560 19 6 -1.0250 -10.6207 1.9691 20 6 -1.0123 -9.4924 1.1775 21 6 0.1509 -8.7410 1.0643 22 8 0.4674 -7.6168 0.3909 23 6 2.8478 -6.3891 -1.4135 24 6 4.1579 -6.7408 -1.7014 25 6 4.4920 -7.0199 -3.0175 26 6 3.5151 -6.9394 -3.9921 27 7 2.2787 -6.6026 -3.6814 28 6 1.9238 -6.3364 -2.4395 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8902 32 1 2.8720 -3.6043 -0.8894 33 1 2.8720 -3.6043 0.8905 34 1 0.8746 -4.9841 0.7827 35 1 3.3519 -8.1388 1.7828 36 1 2.1527 -10.6044 3.0932 37 1 0.0876 -11.9034 3.2719 38 1 -1.9308 -11.2027 2.0556 39 1 -1.9040 -9.1932 0.6467 40 1 4.9004 -6.7952 -0.9191 41 1 5.5027 -7.2975 -3.2780 42 1 3.7674 -7.1549 -5.0199 43 1 0.9002 -6.0686 -2.2226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346838265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:29 Heat of formation + Delta-G solvation = 63.611966 kcal Electronic energy + Delta-G solvation = -25739.977978 eV Core-core repulsion = 22137.243637 eV Total energy + Delta-G solvation = -3602.734341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.58166 -40.10599 -38.09171 -36.59673 -33.68627 -32.76289 -32.33355 -31.46152 -30.54360 -29.88504 -28.67683 -25.81293 -23.91620 -23.39943 -23.19910 -22.51610 -21.55554 -20.72175 -20.53668 -17.46215 -17.30062 -16.90406 -16.40162 -16.31458 -16.07530 -15.93891 -15.02239 -14.75329 -14.42613 -14.22209 -13.99823 -13.80029 -13.61339 -13.44561 -13.22424 -13.00799 -12.71631 -12.49595 -12.36129 -12.15273 -11.97597 -11.59755 -11.15145 -11.06637 -10.97051 -10.58335 -10.26877 -10.13108 -9.77601 -9.49067 -9.37655 -9.18950 -8.91114 -8.74561 -8.38988 -8.27395 -8.11281 -6.02058 -4.04991 0.73106 1.17267 1.22652 1.36035 2.22630 2.60142 3.29862 3.37353 3.40798 3.56917 3.88638 4.05894 4.40734 4.46890 4.52331 4.59476 4.76570 4.86522 4.89185 4.96356 5.04883 5.06915 5.14285 5.16885 5.24911 5.34226 5.35413 5.51010 5.59590 5.69678 5.90836 6.05155 6.09845 6.11755 6.18523 6.22790 6.26117 6.27266 6.31744 6.51455 6.80780 6.87317 7.07385 7.26153 7.61058 7.69173 7.84039 8.02189 8.11729 8.38372 9.01928 9.59040 11.09296 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003319 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.320842 B = 8434.998743 C =10087.280479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.679 5.679 12 C 0.206 3.794 13 H 0.085 0.915 14 C 0.052 3.948 15 C -0.208 4.208 16 C -0.128 4.128 17 C -0.074 4.074 18 C -0.139 4.139 19 C -0.098 4.098 20 C -0.104 4.104 21 C 0.053 3.947 22 O -0.173 6.173 23 C -0.129 4.129 24 C -0.068 4.068 25 C -0.181 4.181 26 C 0.096 3.904 27 N -0.489 5.489 28 C 0.146 3.854 29 H 0.260 0.740 30 H 0.027 0.973 31 H 0.015 0.985 32 H 0.061 0.939 33 H 0.021 0.979 34 H 0.349 0.651 35 H 0.157 0.843 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.152 0.848 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 -23.235 2.165 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.061 4.061 11 N -0.312 5.312 12 C 0.095 3.905 13 H 0.102 0.898 14 C 0.003 3.997 15 C -0.228 4.228 16 C -0.129 4.129 17 C -0.092 4.092 18 C -0.157 4.157 19 C -0.116 4.116 20 C -0.122 4.122 21 C 0.006 3.994 22 O -0.073 6.073 23 C -0.132 4.132 24 C -0.095 4.095 25 C -0.201 4.201 26 C -0.061 4.061 27 N -0.197 5.197 28 C -0.011 4.011 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.168 0.832 35 H 0.174 0.826 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.955 -22.905 0.649 23.253 hybrid contribution 1.618 0.933 1.681 2.513 sum 5.574 -21.972 2.330 22.787 Atomic orbital electron populations 1.69976 1.06015 1.26550 1.50484 1.24994 0.94838 0.99224 0.95240 0.86539 0.80053 0.83804 0.77618 1.19784 1.20938 1.21010 1.21164 0.92965 0.90896 1.51066 0.92727 1.19060 0.93920 0.90173 0.97945 1.22280 0.97174 0.87724 0.98961 1.60652 1.18809 1.01238 1.50465 1.18971 0.94050 0.85919 0.91531 0.89768 1.22306 0.82025 0.97645 0.97687 1.22189 1.00320 0.96294 1.03978 1.19924 0.93730 0.97916 1.01341 1.20261 0.98512 0.93067 0.97342 1.20750 0.92936 1.00696 1.01311 1.20908 0.98770 0.95661 0.96303 1.19997 0.95301 0.95004 1.01904 1.19704 0.96164 0.87866 0.95695 1.84054 1.27272 1.36744 1.59279 1.20653 0.94511 1.01881 0.96157 1.21430 0.95507 0.95525 0.96994 1.22021 1.01003 1.03295 0.93759 1.22793 0.88703 0.94919 0.99704 1.67808 1.19365 1.11315 1.21251 1.22780 1.00612 0.91187 0.86539 0.92987 0.95447 0.96641 0.92053 0.96076 0.83204 0.82551 0.85712 0.85526 0.84890 0.84893 0.85105 0.84999 0.83090 0.81734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.33 5.42 -3.82 -0.02 1.31 16 11 N -0.68 -11.57 5.56 -109.18 -0.61 -12.18 16 12 C 0.21 2.90 2.67 -70.01 -0.19 2.71 16 13 H 0.08 1.07 7.67 -51.93 -0.40 0.67 16 14 C 0.05 0.72 5.71 -35.80 -0.20 0.51 16 15 C -0.21 -2.55 10.99 -37.62 -0.41 -2.97 16 16 C -0.13 -1.62 6.40 -105.16 -0.67 -2.29 16 17 C -0.07 -0.75 10.05 -39.69 -0.40 -1.15 16 18 C -0.14 -1.23 9.98 -39.94 -0.40 -1.62 16 19 C -0.10 -0.89 10.01 -39.54 -0.40 -1.28 16 20 C -0.10 -1.16 10.07 -39.47 -0.40 -1.55 16 21 C 0.05 0.73 7.42 -38.47 -0.29 0.44 16 22 O -0.17 -2.61 10.55 3.91 0.04 -2.57 16 23 C -0.13 -1.85 4.71 -104.48 -0.49 -2.34 16 24 C -0.07 -0.82 9.82 -39.28 -0.39 -1.20 16 25 C -0.18 -2.02 10.11 -39.44 -0.40 -2.42 16 26 C 0.10 1.21 11.18 -17.54 -0.20 1.02 16 27 N -0.49 -7.74 10.36 -13.25 -0.14 -7.88 16 28 C 0.15 2.35 10.49 -17.55 -0.18 2.16 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.27 8.00 -51.93 -0.42 0.85 16 33 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 34 H 0.35 5.92 8.35 -39.29 -0.33 5.59 16 35 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.17 2.79 7.74 -52.49 -0.41 2.39 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -32.56 372.05 -10.70 -43.26 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.74 Total: 4.75 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -5.59 Total: -21.54 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.01 Total: -46.12 kcal Atomic # 8 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.56 -10.70 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346838265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.874 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds