Wall clock time and date at job start Tue Mar 31 2020 13:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.46871 * 35.00433 * 12 11 10 14 14 C 1.50696 * 109.46865 * 155.00158 * 12 11 10 15 15 C 1.33997 * 124.92329 * 220.00070 * 14 12 11 16 16 C 1.46782 * 106.18909 * 179.97438 * 15 14 12 17 17 C 1.39408 * 134.37572 * 180.02562 * 16 15 14 18 18 C 1.36742 * 119.71599 * 179.97438 * 17 16 15 19 19 C 1.38740 * 120.41677 * 0.02562 * 18 17 16 20 20 C 1.37838 * 120.68721 * 359.97438 * 19 18 17 21 21 C 1.38942 * 119.81822 * 359.97438 * 20 19 18 22 22 O 1.34450 * 124.92767 * 39.69980 * 14 12 11 23 23 C 1.50702 * 109.47191 * 274.99973 * 12 11 10 24 24 C 1.38667 * 120.41596 * 140.00037 * 23 12 11 25 25 C 1.38628 * 118.42027 * 180.02562 * 24 23 12 26 26 C 1.38228 * 119.16201 * 359.97438 * 25 24 23 27 27 N 1.31857 * 120.76032 * 359.97438 * 26 25 24 28 28 C 1.31879 * 121.72607 * 359.71036 * 27 26 25 29 29 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 31 31 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 32 32 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 33 33 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 34 34 H 1.00899 * 111.00283 * 303.95539 * 11 10 9 35 35 H 1.08002 * 126.90516 * 359.95326 * 15 14 12 36 36 H 1.07996 * 120.13803 * 359.95064 * 17 16 15 37 37 H 1.07998 * 119.78547 * 179.97438 * 18 17 16 38 38 H 1.08006 * 119.65405 * 179.97438 * 19 18 17 39 39 H 1.08006 * 120.09309 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.79288 * 359.97438 * 24 23 12 41 41 H 1.08003 * 120.42087 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.62091 * 179.97438 * 26 25 24 43 43 H 1.07999 * 119.62036 * 180.30420 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4354 -6.0759 0.0018 13 1 3.3182 -5.8281 0.5912 14 6 1.7507 -7.2763 0.6028 15 6 2.3311 -8.1559 1.4304 16 6 1.3008 -9.1476 1.7614 17 6 1.2688 -10.2918 2.5573 18 6 0.1135 -11.0167 2.6560 19 6 -1.0250 -10.6207 1.9691 20 6 -1.0123 -9.4924 1.1775 21 6 0.1509 -8.7410 1.0643 22 8 0.4674 -7.6168 0.3909 23 6 2.8478 -6.3891 -1.4135 24 6 4.1579 -6.7408 -1.7014 25 6 4.4920 -7.0199 -3.0175 26 6 3.5151 -6.9394 -3.9921 27 7 2.2787 -6.6026 -3.6814 28 6 1.9238 -6.3364 -2.4395 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8902 32 1 2.8720 -3.6043 -0.8894 33 1 2.8720 -3.6043 0.8905 34 1 0.8746 -4.9841 0.7827 35 1 3.3519 -8.1388 1.7828 36 1 2.1527 -10.6044 3.0932 37 1 0.0876 -11.9034 3.2719 38 1 -1.9308 -11.2027 2.0556 39 1 -1.9040 -9.1932 0.6467 40 1 4.9004 -6.7952 -0.9191 41 1 5.5027 -7.2975 -3.2780 42 1 3.7674 -7.1549 -5.0199 43 1 0.9002 -6.0686 -2.2226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346838265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:29 Heat of formation + Delta-G solvation = 44.425686 kcal Electronic energy + Delta-G solvation = -25740.809957 eV Core-core repulsion = 22137.243637 eV Total energy + Delta-G solvation = -3603.566321 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.51273 -41.13670 -38.92988 -37.90102 -35.47116 -34.03135 -33.44928 -32.71050 -31.34949 -31.07123 -30.09594 -27.19017 -25.52463 -24.51258 -24.11565 -23.43826 -22.66667 -22.18328 -21.67431 -18.58769 -18.32875 -18.28830 -17.80004 -17.34612 -17.21720 -16.87929 -16.49447 -16.01211 -15.86315 -15.26170 -15.20633 -14.91042 -14.67513 -14.50357 -14.23178 -14.13280 -13.98018 -13.93351 -13.50560 -13.23195 -13.19313 -12.89146 -12.80944 -12.50430 -12.42941 -12.06714 -11.86709 -11.50167 -11.32797 -11.10626 -10.75646 -10.59623 -10.43133 -9.95604 -9.59054 -9.49705 -9.14383 -8.21693 -6.33371 -0.12343 0.18253 0.37137 0.40196 1.30960 1.39093 1.39887 1.52866 1.69851 2.38656 2.77287 2.86601 2.93747 3.12165 3.43906 3.53288 3.70884 3.83813 3.96083 4.05032 4.07607 4.13302 4.16159 4.22397 4.36252 4.39292 4.47045 4.51882 4.55543 4.66582 4.73169 4.89332 4.92345 5.01748 5.18034 5.20849 5.27548 5.34356 5.41322 5.45346 5.50502 5.62004 5.70026 5.77768 5.80702 6.01751 6.13016 6.23833 6.35381 6.83941 7.07191 7.36077 8.90752 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003319 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.320842 B = 8434.998743 C =10087.280479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.090 3.910 11 N -0.688 5.688 12 C 0.214 3.786 13 H 0.106 0.894 14 C 0.026 3.974 15 C -0.194 4.194 16 C -0.151 4.151 17 C -0.078 4.078 18 C -0.136 4.136 19 C -0.088 4.088 20 C -0.128 4.128 21 C 0.020 3.980 22 O -0.203 6.203 23 C -0.139 4.139 24 C -0.069 4.069 25 C -0.167 4.167 26 C 0.083 3.917 27 N -0.523 5.523 28 C 0.116 3.884 29 H 0.263 0.737 30 H -0.010 1.010 31 H -0.008 1.008 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.346 0.654 35 H 0.185 0.815 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.136 0.864 40 H 0.165 0.835 41 H 0.174 0.826 42 H 0.180 0.820 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.045 -25.079 3.316 26.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.004 4.004 10 C -0.038 4.038 11 N -0.320 5.320 12 C 0.103 3.897 13 H 0.123 0.877 14 C -0.022 4.022 15 C -0.213 4.213 16 C -0.152 4.152 17 C -0.095 4.095 18 C -0.153 4.153 19 C -0.106 4.106 20 C -0.146 4.146 21 C -0.027 4.027 22 O -0.104 6.104 23 C -0.142 4.142 24 C -0.095 4.095 25 C -0.187 4.187 26 C -0.074 4.074 27 N -0.232 5.232 28 C -0.040 4.040 29 H 0.072 0.928 30 H 0.008 0.992 31 H 0.010 0.990 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.165 0.835 35 H 0.202 0.798 36 H 0.168 0.832 37 H 0.180 0.820 38 H 0.183 0.817 39 H 0.154 0.846 40 H 0.183 0.817 41 H 0.191 0.809 42 H 0.197 0.803 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.992 -24.771 1.807 25.802 hybrid contribution 0.612 1.330 1.316 1.968 sum 7.603 -23.441 3.122 24.840 Atomic orbital electron populations 1.70122 1.07899 1.27726 1.51475 1.25992 0.95745 1.03460 0.94661 0.85372 0.79156 0.78621 0.77732 1.18292 1.20598 1.20262 1.21611 0.93577 0.92028 1.50766 0.91883 1.18892 0.94273 0.92313 0.94969 1.21812 0.95541 0.87284 0.99184 1.60460 1.19598 1.01262 1.50674 1.18970 0.93899 0.84724 0.92059 0.87657 1.22283 0.82104 0.98470 0.99332 1.22546 1.01282 0.95199 1.02319 1.20242 0.93397 0.99165 1.02346 1.20663 1.00093 0.92106 0.96684 1.21227 0.92090 1.01280 1.00736 1.21371 1.00258 0.94493 0.94488 1.20338 0.95058 0.96035 1.03208 1.20240 0.97741 0.88089 0.96667 1.83996 1.28238 1.37862 1.60344 1.20714 0.95454 1.02460 0.95553 1.21863 0.94840 0.94297 0.98501 1.22473 1.02364 1.00991 0.92839 1.23381 0.87994 0.94340 1.01698 1.67716 1.21575 1.12598 1.21281 1.22480 1.00144 0.93615 0.87740 0.92786 0.99160 0.98957 0.92502 0.94824 0.83527 0.79761 0.83187 0.82012 0.81708 0.84584 0.81715 0.80867 0.80292 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.78 5.23 29.85 0.16 1.94 16 10 C 0.09 3.73 5.42 86.30 0.47 4.20 16 11 N -0.69 -24.88 5.56 -499.34 -2.78 -27.66 16 12 C 0.21 6.10 2.67 43.42 0.12 6.22 16 13 H 0.11 2.52 7.67 -2.39 -0.02 2.51 16 14 C 0.03 0.73 5.71 24.72 0.14 0.88 16 15 C -0.19 -4.59 10.99 23.54 0.26 -4.33 16 16 C -0.15 -3.71 6.40 -20.21 -0.13 -3.84 16 17 C -0.08 -1.40 10.05 22.20 0.22 -1.18 16 18 C -0.14 -1.99 9.98 22.04 0.22 -1.77 16 19 C -0.09 -1.43 10.01 22.30 0.22 -1.20 16 20 C -0.13 -2.92 10.07 22.34 0.23 -2.69 16 21 C 0.02 0.56 7.42 22.99 0.17 0.73 16 22 O -0.20 -6.62 10.55 -8.94 -0.09 -6.71 16 23 C -0.14 -4.02 4.71 -19.77 -0.09 -4.11 16 24 C -0.07 -1.50 9.82 22.47 0.22 -1.28 16 25 C -0.17 -3.25 10.11 22.36 0.23 -3.03 16 26 C 0.08 2.00 11.18 84.69 0.95 2.95 16 27 N -0.52 -17.22 10.36 -195.85 -2.03 -19.25 16 28 C 0.12 4.02 10.49 84.67 0.89 4.90 16 29 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.06 2.40 8.00 -2.39 -0.02 2.38 16 33 H 0.03 1.30 8.05 -2.39 -0.02 1.28 16 34 H 0.35 12.72 8.35 -89.69 -0.75 11.97 16 35 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 39 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 40 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 43 H 0.14 5.24 7.74 -2.91 -0.02 5.22 16 Total: -1.00 -75.58 372.05 2.64 -72.94 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.27 Total: 23.59 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 4.96 Total: -32.00 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -4.52 Total: -104.49 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.09 Total: -6.71 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -75.58 2.64 -72.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346838265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.369 kcal (2) G-P(sol) polarization free energy of solvation -75.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds