Wall clock time and date at job start Tue Mar 31 2020 13:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99599 * 2 1 4 4 H 1.48498 * 109.47256 * 239.99981 * 3 2 1 5 5 H 1.48503 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47164 * 120.00331 * 3 2 1 7 7 C 1.37870 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00384 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47426 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47386 * 179.97438 * 10 9 7 12 12 C 1.46901 * 110.99994 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47576 * 325.00792 * 12 11 10 14 14 C 1.50696 * 109.47057 * 204.99934 * 12 11 10 15 15 C 1.34000 * 124.91993 * 140.00354 * 14 12 11 16 16 C 1.46782 * 106.18373 * 179.97438 * 15 14 12 17 17 C 1.39411 * 134.37089 * 180.02562 * 16 15 14 18 18 C 1.36738 * 119.71647 * 179.97438 * 17 16 15 19 19 C 1.38742 * 120.41795 * 359.97438 * 18 17 16 20 20 C 1.37851 * 120.68590 * 0.02996 * 19 18 17 21 21 C 1.38942 * 119.81866 * 0.25302 * 20 19 18 22 22 O 1.34453 * 124.92501 * 319.98169 * 14 12 11 23 23 C 1.50706 * 109.46853 * 85.00343 * 12 11 10 24 24 C 1.38673 * 120.42073 * 219.71961 * 23 12 11 25 25 C 1.38623 * 118.42125 * 179.78315 * 24 23 12 26 26 C 1.38229 * 119.16194 * 0.51149 * 25 24 23 27 27 N 1.31852 * 120.76038 * 359.72669 * 26 25 24 28 28 C 1.31882 * 121.73044 * 359.97438 * 27 26 25 29 29 H 0.96996 * 120.00239 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47132 * 60.00062 * 9 7 2 31 31 H 1.09006 * 109.46883 * 300.00319 * 9 7 2 32 32 H 1.09008 * 109.47303 * 59.99498 * 10 9 7 33 33 H 1.09006 * 109.47291 * 299.99997 * 10 9 7 34 34 H 1.00900 * 110.99925 * 303.95648 * 11 10 9 35 35 H 1.07997 * 126.91040 * 359.97438 * 15 14 12 36 36 H 1.08002 * 120.13728 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.79001 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.65344 * 180.02562 * 19 18 17 39 39 H 1.08002 * 120.08749 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.78473 * 0.02562 * 24 23 12 41 41 H 1.08005 * 120.41683 * 180.22056 * 25 24 23 42 42 H 1.08000 * 119.61791 * 179.74350 * 26 25 24 43 43 H 1.07999 * 119.62302 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5110 -4.9343 0.0001 12 6 2.4355 -6.0758 -0.0005 13 1 3.3180 -5.8284 -0.5905 14 6 1.7506 -7.2766 -0.6004 15 6 2.3305 -8.1567 -1.4278 16 6 1.3004 -9.1493 -1.7566 17 6 1.2685 -10.2948 -2.5506 18 6 0.1138 -11.0209 -2.6467 19 6 -1.0243 -10.6250 -1.9590 20 6 -1.0116 -9.4952 -1.1692 21 6 0.1496 -8.7398 -1.0625 22 8 0.4691 -7.6205 -0.3826 23 6 2.8489 -6.3882 1.4147 24 6 4.1578 -6.7453 1.7013 25 6 4.4937 -7.0194 3.0180 26 6 3.5172 -6.9387 3.9931 27 7 2.2810 -6.6006 3.6831 28 6 1.9271 -6.3273 2.4424 29 1 -0.4850 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.8722 -3.6042 0.8895 33 1 2.8721 -3.6043 -0.8906 34 1 0.8748 -4.9841 0.7817 35 1 3.3507 -8.1393 -1.7817 36 1 2.1520 -10.6072 -3.0875 37 1 0.0878 -11.9087 -3.2611 38 1 -1.9295 -11.2080 -2.0434 39 1 -1.9032 -9.1957 -0.6384 40 1 4.8988 -6.8046 0.9179 41 1 5.5045 -7.2972 3.2780 42 1 3.7698 -7.1548 5.0206 43 1 0.9046 -6.0544 2.2268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346838268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:32 Heat of formation + Delta-G solvation = 64.430794 kcal Electronic energy + Delta-G solvation = -25751.975984 eV Core-core repulsion = 22149.277150 eV Total energy + Delta-G solvation = -3602.698834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.47723 -40.35840 -38.01521 -36.68936 -33.68841 -32.73294 -32.45688 -31.48411 -30.46990 -29.86005 -28.67296 -25.86209 -24.14439 -23.39363 -23.19478 -22.53535 -21.50186 -20.80537 -20.52792 -17.47330 -17.37839 -16.89903 -16.48919 -16.37863 -16.09182 -15.71568 -15.45576 -14.60330 -14.43522 -14.31853 -14.08108 -13.85687 -13.70879 -13.25991 -13.17613 -13.14772 -12.67490 -12.44668 -12.25546 -12.08571 -11.94693 -11.89334 -11.19164 -11.02115 -10.94967 -10.61233 -10.21724 -10.12052 -9.92929 -9.55202 -9.48775 -9.25860 -9.09816 -8.67175 -8.38878 -8.19769 -8.10799 -6.01782 -4.05070 0.80127 0.99626 1.18146 1.29951 2.33135 2.71588 3.32020 3.36707 3.38517 3.64296 3.71485 4.10165 4.28670 4.43897 4.56553 4.64306 4.66736 4.74929 4.82970 4.86790 4.95499 5.04963 5.14774 5.17116 5.25225 5.34217 5.36401 5.43201 5.61880 5.65689 5.77037 5.95584 6.05100 6.13998 6.16503 6.17045 6.25386 6.32652 6.36425 6.56807 6.59455 6.85253 7.14447 7.27285 7.57397 7.67964 7.82401 7.88673 8.01735 8.37846 9.01347 9.58838 11.09543 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.003317 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.342750 B = 8439.428074 C =10085.340938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.065 3.935 11 N -0.675 5.675 12 C 0.204 3.796 13 H 0.119 0.881 14 C 0.077 3.923 15 C -0.217 4.217 16 C -0.125 4.125 17 C -0.075 4.075 18 C -0.139 4.139 19 C -0.101 4.101 20 C -0.104 4.104 21 C 0.052 3.948 22 O -0.177 6.177 23 C -0.165 4.165 24 C -0.061 4.061 25 C -0.173 4.173 26 C 0.097 3.903 27 N -0.479 5.479 28 C 0.117 3.883 29 H 0.262 0.738 30 H 0.027 0.973 31 H 0.015 0.985 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.344 0.656 35 H 0.156 0.844 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.575 -23.036 -0.201 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.306 5.306 12 C 0.092 3.908 13 H 0.137 0.863 14 C 0.028 3.972 15 C -0.236 4.236 16 C -0.126 4.126 17 C -0.093 4.093 18 C -0.158 4.158 19 C -0.119 4.119 20 C -0.123 4.123 21 C 0.005 3.995 22 O -0.078 6.078 23 C -0.169 4.169 24 C -0.088 4.088 25 C -0.193 4.193 26 C -0.060 4.060 27 N -0.187 5.187 28 C -0.041 4.041 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.165 0.835 35 H 0.174 0.826 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.172 0.828 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.488 -22.688 -0.047 23.128 hybrid contribution 1.559 0.909 0.135 1.810 sum 6.047 -21.779 0.088 22.603 Atomic orbital electron populations 1.69959 1.06024 1.26796 1.50265 1.24991 0.94843 0.99213 0.95207 0.86645 0.79576 0.83113 0.78583 1.20194 1.21226 1.20297 1.21082 0.92899 0.90889 1.51374 0.92792 1.19058 0.93937 0.90182 0.97942 1.22282 0.97261 0.87639 0.99080 1.60808 1.18210 1.01426 1.50161 1.19095 0.94643 0.86784 0.90294 0.86300 1.22210 0.81487 0.96129 0.97353 1.22098 1.00379 0.96545 1.04606 1.19920 0.93696 0.97714 1.01259 1.20250 0.98488 0.93151 0.97443 1.20730 0.92982 1.00695 1.01355 1.20882 0.98732 0.95765 0.96521 1.19978 0.95299 0.94943 1.02032 1.19679 0.96134 0.87888 0.95828 1.84005 1.27794 1.37181 1.58782 1.21576 0.95349 1.02203 0.97785 1.21479 0.95494 0.94722 0.97064 1.22124 1.01155 1.02256 0.93796 1.22826 0.88482 0.94821 0.99912 1.67728 1.19545 1.10746 1.20724 1.22606 0.99790 0.94120 0.87555 0.92858 0.95445 0.96677 0.96068 0.91796 0.83473 0.82645 0.85775 0.85621 0.85004 0.85048 0.84630 0.84674 0.82753 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.67 5.23 -27.89 -0.15 0.53 16 10 C 0.06 1.30 5.42 -3.83 -0.02 1.28 16 11 N -0.67 -11.71 6.20 -109.18 -0.68 -12.38 16 12 C 0.20 2.86 2.68 -70.01 -0.19 2.67 16 13 H 0.12 1.49 7.67 -51.93 -0.40 1.10 16 14 C 0.08 1.11 6.06 -35.80 -0.22 0.89 16 15 C -0.22 -2.79 10.99 -37.62 -0.41 -3.20 16 16 C -0.12 -1.66 6.40 -105.16 -0.67 -2.33 16 17 C -0.08 -0.81 10.05 -39.69 -0.40 -1.21 16 18 C -0.14 -1.31 9.98 -39.94 -0.40 -1.71 16 19 C -0.10 -0.97 10.01 -39.54 -0.40 -1.36 16 20 C -0.10 -1.22 10.07 -39.46 -0.40 -1.62 16 21 C 0.05 0.75 7.42 -38.47 -0.29 0.47 16 22 O -0.18 -2.78 10.56 3.91 0.04 -2.74 16 23 C -0.17 -2.22 4.71 -104.48 -0.49 -2.71 16 24 C -0.06 -0.68 9.82 -39.28 -0.39 -1.07 16 25 C -0.17 -1.78 10.11 -39.44 -0.40 -2.18 16 26 C 0.10 1.13 11.18 -17.55 -0.20 0.94 16 27 N -0.48 -7.05 10.36 -13.25 -0.14 -7.18 16 28 C 0.12 1.72 10.29 -17.55 -0.18 1.54 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.42 8.00 -51.92 -0.42 0.01 16 33 H 0.06 1.26 8.06 -51.93 -0.42 0.84 16 34 H 0.34 5.96 6.38 -39.29 -0.25 5.71 16 35 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.16 2.27 6.52 -52.49 -0.34 1.93 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -33.11 369.67 -10.68 -43.79 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.59 Total: 4.96 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -5.60 Total: -22.49 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.08 Total: -45.68 kcal Atomic # 8 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.11 -10.68 -43.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346838268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.221 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds