Wall clock time and date at job start Tue Mar 31 2020 13:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99598 * 2 1 4 4 H 1.48499 * 109.46638 * 90.00548 * 3 2 1 5 5 H 1.48498 * 109.47040 * 210.00267 * 3 2 1 6 6 H 1.48500 * 109.47287 * 330.00547 * 3 2 1 7 7 C 1.37874 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99902 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99943 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.46840 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00280 * 264.37356 * 10 9 7 12 12 C 1.50692 * 109.47312 * 90.00459 * 11 10 9 13 13 C 1.38672 * 120.42542 * 90.00009 * 12 11 10 14 14 C 1.38624 * 118.42912 * 180.02562 * 13 12 11 15 15 C 1.38234 * 119.15516 * 359.97438 * 14 13 12 16 16 N 1.31857 * 120.76673 * 359.97438 * 15 14 13 17 17 C 1.31885 * 121.72330 * 359.71070 * 16 15 14 18 18 C 1.34779 * 119.99961 * 84.37625 * 10 9 7 19 19 O 1.21283 * 120.00174 * 184.62587 * 18 10 9 20 20 C 1.50705 * 119.99852 * 4.62641 * 18 10 9 21 21 H 1.09000 * 112.50432 * 344.19093 * 20 18 10 22 22 C 1.52881 * 113.16574 * 114.09884 * 20 18 10 23 23 C 1.51426 * 84.73072 * 115.22290 * 22 20 18 24 24 C 1.38949 * 145.53148 * 179.97438 * 23 22 20 25 25 C 1.37977 * 120.32696 * 180.02562 * 24 23 22 26 26 C 1.38241 * 120.17595 * 359.97438 * 25 24 23 27 27 C 1.38172 * 119.74861 * 359.97438 * 26 25 24 28 28 C 1.38238 * 120.12473 * 0.03396 * 27 26 25 29 29 H 0.96993 * 120.00146 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47162 * 300.00862 * 9 7 2 31 31 H 1.09002 * 109.46286 * 60.00659 * 9 7 2 32 32 H 1.09004 * 109.47071 * 210.00670 * 11 10 9 33 33 H 1.09001 * 109.47390 * 330.00238 * 11 10 9 34 34 H 1.08005 * 120.78272 * 0.02562 * 13 12 11 35 35 H 1.07998 * 120.42551 * 179.97438 * 14 13 12 36 36 H 1.08000 * 119.61225 * 180.02562 * 15 14 13 37 37 H 1.08001 * 119.61876 * 180.30726 * 17 16 15 38 38 H 1.09005 * 113.98979 * 229.16669 * 22 20 18 39 39 H 1.09001 * 113.99342 * 1.28024 * 22 20 18 40 40 H 1.08006 * 119.83358 * 0.02856 * 24 23 22 41 41 H 1.08004 * 119.90766 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.12423 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.93629 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.5848 -4.2502 -1.2631 12 6 3.7902 -3.5500 -1.8353 13 6 5.0695 -3.9727 -1.5069 14 6 6.1488 -3.2984 -2.0565 15 6 5.9156 -2.2349 -2.9082 16 7 4.6851 -1.8610 -3.1991 17 6 3.6349 -2.4830 -2.6996 18 6 2.7281 -4.0504 1.1611 19 8 3.5786 -4.9150 1.1545 20 6 2.2582 -3.4656 2.4681 21 1 1.7132 -2.5310 2.3350 22 6 1.5191 -4.4746 3.3473 23 6 2.6817 -4.2861 4.2991 24 6 3.2350 -4.6554 5.5190 25 6 4.4370 -4.1171 5.9303 26 6 5.1003 -3.2057 5.1301 27 6 4.5554 -2.8356 3.9156 28 6 3.3511 -3.3741 3.5025 29 1 -0.4850 0.8400 0.0004 30 1 0.6248 -2.5571 0.8895 31 1 0.6243 -2.5567 -0.8904 32 1 2.8247 -5.2981 -1.0830 33 1 1.7567 -4.1832 -1.9688 34 1 5.2213 -4.8075 -0.8387 35 1 7.1590 -3.6001 -1.8224 36 1 6.7510 -1.7046 -3.3409 37 1 2.6419 -2.1512 -2.9648 38 1 0.5667 -4.1117 3.7338 39 1 1.4558 -5.4743 2.9176 40 1 2.7216 -5.3674 6.1483 41 1 4.8607 -4.4087 6.8800 42 1 6.0409 -2.7846 5.4531 43 1 5.0713 -2.1241 3.2878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353777589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:22 Heat of formation + Delta-G solvation = 68.011328 kcal Electronic energy + Delta-G solvation = -27020.839672 eV Core-core repulsion = 23418.296102 eV Total energy + Delta-G solvation = -3602.543570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72278 -39.74591 -38.38938 -35.39523 -34.88781 -32.96480 -32.00491 -31.17444 -30.52270 -27.83408 -27.38071 -26.08782 -24.49473 -23.21375 -22.86511 -22.10959 -21.30073 -20.25434 -18.21336 -16.98301 -16.72937 -16.55213 -16.30261 -15.69923 -15.48707 -15.05327 -14.94842 -14.53381 -14.22847 -13.94117 -13.59848 -13.22611 -12.96427 -12.83561 -12.63376 -12.56927 -12.37393 -12.15199 -11.85822 -11.83380 -11.62320 -11.46438 -11.25311 -10.90818 -10.83557 -10.63319 -10.24818 -10.05195 -9.81335 -9.43605 -9.19361 -9.04021 -8.63975 -8.59557 -8.49726 -8.28108 -7.84474 -6.22445 -4.29000 1.50420 1.57079 1.64292 1.74538 3.15636 3.23103 3.30461 3.37591 3.76731 4.04388 4.31255 4.36078 4.43473 4.66823 4.86963 5.04004 5.10607 5.14335 5.19424 5.27921 5.31845 5.34485 5.42115 5.51940 5.68025 5.72133 5.80870 5.87333 5.88771 6.00185 6.05707 6.09565 6.23502 6.30627 6.41689 6.53135 6.59203 6.61042 6.69694 6.75958 7.00776 7.07588 7.14940 7.22537 7.41914 7.73361 7.99361 8.17445 8.42344 8.74398 8.90176 9.39980 10.84159 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.005462 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.713617 B = 5125.538869 C = 6321.853037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.070 3.930 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.235 3.765 10 N -0.590 5.590 11 C 0.164 3.836 12 C -0.142 4.142 13 C -0.056 4.056 14 C -0.187 4.187 15 C 0.090 3.910 16 N -0.491 5.491 17 C 0.136 3.864 18 C 0.536 3.464 19 O -0.563 6.563 20 C -0.069 4.069 21 H 0.135 0.865 22 C -0.057 4.057 23 C -0.122 4.122 24 C -0.102 4.102 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.084 4.084 28 C -0.087 4.087 29 H 0.265 0.735 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.362 -8.250 3.939 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.196 1.196 6 H -0.210 1.210 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.116 3.884 10 N -0.320 5.320 11 C 0.040 3.960 12 C -0.145 4.145 13 C -0.083 4.083 14 C -0.207 4.207 15 C -0.067 4.067 16 N -0.199 5.199 17 C -0.021 4.021 18 C 0.324 3.676 19 O -0.443 6.443 20 C -0.090 4.090 21 H 0.152 0.848 22 C -0.094 4.094 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.102 4.102 28 C -0.087 4.087 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.164 0.836 37 H 0.174 0.826 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.483 -7.856 3.353 10.150 hybrid contribution 0.729 0.636 0.645 1.163 sum 6.212 -7.220 3.999 10.330 Atomic orbital electron populations 1.69904 1.05890 1.27359 1.49685 1.24861 0.94755 0.99093 0.94603 0.86611 0.80242 0.83242 0.78270 1.20555 1.19635 1.20982 1.21411 0.93438 0.90196 1.52022 0.92323 1.19544 0.87393 0.82651 0.98843 1.48310 1.44686 1.34865 1.04104 1.20146 0.93882 0.95963 0.86038 1.21229 0.96023 0.98724 0.98543 1.21581 0.91960 0.98688 0.96046 1.22026 0.99677 0.98652 1.00322 1.22640 0.94575 0.94274 0.95239 1.67687 0.99291 1.28553 1.24392 1.22694 0.97736 0.89964 0.91734 1.19965 0.81102 0.81552 0.85001 1.90581 1.32373 1.33547 1.87760 1.21419 0.94593 1.01880 0.91103 0.84770 1.21635 0.95740 0.99571 0.92433 1.22301 0.97604 0.97702 0.94645 1.20441 0.95849 1.00427 0.95292 1.20851 0.95415 0.98268 0.99766 1.20921 0.99869 0.98640 0.94390 1.20221 0.94148 0.99726 0.96084 1.21170 0.94477 0.96769 0.96327 0.92492 0.94252 0.94239 0.90086 0.89697 0.84806 0.85619 0.83637 0.82633 0.88196 0.88813 0.86813 0.86176 0.85941 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 13.29 55.43 0.74 -22.87 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.53 -13.17 8.98 -34.44 -0.31 -13.48 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.24 5.14 4.83 -5.19 -0.03 5.12 16 10 N -0.59 -11.52 2.45 -176.44 -0.43 -11.96 16 11 C 0.16 2.80 5.56 -5.20 -0.03 2.77 16 12 C -0.14 -2.53 5.48 -104.48 -0.57 -3.10 16 13 C -0.06 -0.96 9.76 -39.28 -0.38 -1.34 16 14 C -0.19 -2.86 10.11 -39.44 -0.40 -3.26 16 15 C 0.09 1.45 11.18 -17.54 -0.20 1.25 16 16 N -0.49 -9.23 10.36 -13.25 -0.14 -9.37 16 17 C 0.14 2.54 10.86 -17.55 -0.19 2.35 16 18 C 0.54 10.68 6.82 -10.98 -0.07 10.60 16 19 O -0.56 -12.03 15.60 5.55 0.09 -11.95 16 20 C -0.07 -1.28 3.48 -96.60 -0.34 -1.62 16 21 H 0.13 2.70 5.81 -51.93 -0.30 2.39 16 22 C -0.06 -0.86 8.00 -27.59 -0.22 -1.08 16 23 C -0.12 -1.99 7.32 -107.60 -0.79 -2.78 16 24 C -0.10 -1.44 10.05 -39.41 -0.40 -1.84 16 25 C -0.12 -1.65 10.03 -39.68 -0.40 -2.05 16 26 C -0.12 -1.70 10.06 -39.60 -0.40 -2.10 16 27 C -0.08 -1.43 10.04 -39.61 -0.40 -1.82 16 28 C -0.09 -1.59 6.70 -104.55 -0.70 -2.29 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.04 0.89 6.38 -51.93 -0.33 0.55 16 31 H 0.04 0.89 7.83 -51.93 -0.41 0.49 16 32 H 0.08 1.32 7.44 -51.93 -0.39 0.93 16 33 H 0.08 1.29 7.81 -51.93 -0.41 0.88 16 34 H 0.13 2.27 7.50 -52.48 -0.39 1.88 16 35 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.15 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.16 2.87 8.06 -52.49 -0.42 2.45 16 38 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.09 1.37 7.98 -51.93 -0.41 0.96 16 40 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 42 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -29.80 368.69 -10.69 -40.49 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.57 Total: 7.25 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -5.91 Total: -12.98 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.17 Total: -44.20 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.80 -10.69 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353777589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.497 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds