Wall clock time and date at job start Tue Mar 31 2020 13:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00425 * 2 1 4 4 H 1.48499 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47110 * 299.99923 * 3 2 1 6 6 H 1.48496 * 109.47143 * 59.99917 * 3 2 1 7 7 C 1.37878 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00490 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99686 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00132 * 269.99812 * 10 9 7 12 12 C 1.50699 * 109.47100 * 270.00272 * 11 10 9 13 13 C 1.38670 * 120.41579 * 269.71636 * 12 11 10 14 14 C 1.38636 * 118.41954 * 179.78581 * 13 12 11 15 15 C 1.38222 * 119.15845 * 0.51205 * 14 13 12 16 16 N 1.31854 * 120.76426 * 359.72945 * 15 14 13 17 17 C 1.31888 * 121.72863 * 359.97438 * 16 15 14 18 18 C 1.34772 * 119.99994 * 90.00411 * 10 9 7 19 19 O 1.21283 * 120.00222 * 180.02562 * 18 10 9 20 20 C 1.50704 * 120.00107 * 359.97438 * 18 10 9 21 21 H 1.09001 * 112.50636 * 309.68728 * 20 18 10 22 22 C 1.52881 * 113.22022 * 179.80335 * 20 18 10 23 23 C 1.51432 * 84.73053 * 244.76792 * 22 20 18 24 24 C 1.38952 * 145.52633 * 180.02562 * 23 22 20 25 25 C 1.37979 * 120.32348 * 179.97438 * 24 23 22 26 26 C 1.38242 * 120.17396 * 359.95994 * 25 24 23 27 27 C 1.38169 * 119.74919 * 0.25648 * 26 25 24 28 28 C 1.38233 * 120.12815 * 359.54788 * 27 26 25 29 29 H 0.97002 * 119.99440 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47057 * 60.00048 * 9 7 2 31 31 H 1.08999 * 109.47141 * 299.99959 * 9 7 2 32 32 H 1.09003 * 109.46679 * 30.00317 * 11 10 9 33 33 H 1.08993 * 109.47150 * 149.99815 * 11 10 9 34 34 H 1.08008 * 120.79451 * 0.02562 * 13 12 11 35 35 H 1.08000 * 120.41797 * 180.26476 * 14 13 12 36 36 H 1.08005 * 119.61816 * 179.70122 * 15 14 13 37 37 H 1.07997 * 119.61860 * 180.02562 * 17 16 15 38 38 H 1.08994 * 113.99246 * 358.71504 * 22 20 18 39 39 H 1.09006 * 113.98772 * 130.67366 * 22 20 18 40 40 H 1.08000 * 119.83866 * 359.97438 * 24 23 22 41 41 H 1.07999 * 119.91242 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.12111 * 180.02562 * 26 25 24 43 43 H 1.08008 * 119.94125 * 179.67180 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6789 -4.1695 -1.2682 12 6 1.7621 -5.2837 -1.7032 13 6 2.0112 -6.5907 -1.3127 14 6 1.1384 -7.5826 -1.7329 15 6 0.0627 -7.2396 -2.5302 16 7 -0.1404 -5.9864 -2.8864 17 6 0.6657 -5.0164 -2.5006 18 6 2.6407 -4.1250 1.1677 19 8 3.4292 -5.0466 1.1677 20 6 2.1515 -3.5519 2.4728 21 1 2.2435 -2.4665 2.5126 22 6 2.7425 -4.2509 3.6973 23 6 1.3152 -4.6781 3.9687 24 6 0.4725 -5.3826 4.8197 25 6 -0.8812 -5.4495 4.5613 26 6 -1.4092 -4.8144 3.4527 27 6 -0.5752 -4.1163 2.6005 28 6 0.7806 -4.0452 2.8606 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6240 -2.5566 0.8903 32 1 2.6867 -3.3878 -2.0278 33 1 3.6883 -4.5595 -1.1379 34 1 2.8627 -6.8299 -0.6928 35 1 1.2993 -8.6108 -1.4442 36 1 -0.6191 -8.0071 -2.8658 37 1 0.4669 -4.0016 -2.8121 38 1 3.4136 -5.0752 3.4562 39 1 3.1527 -3.5688 4.4421 40 1 0.8791 -5.8802 5.6878 41 1 -1.5300 -5.9992 5.2270 42 1 -2.4690 -4.8670 3.2514 43 1 -0.9836 -3.6234 1.7306 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353777590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:25 Heat of formation + Delta-G solvation = 63.648514 kcal Electronic energy + Delta-G solvation = -27063.129942 eV Core-core repulsion = 23460.397185 eV Total energy + Delta-G solvation = -3602.732756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74484 -39.90641 -38.39730 -35.48392 -34.79945 -33.05508 -32.13138 -31.34422 -30.47410 -27.70912 -27.38188 -26.30793 -24.38554 -23.42051 -22.84061 -22.13903 -21.38999 -20.17482 -18.20346 -17.01231 -16.89901 -16.61969 -16.18982 -15.87456 -15.61846 -15.13839 -14.83260 -14.61228 -14.33330 -14.01363 -13.57915 -13.37042 -13.05933 -12.79864 -12.75707 -12.48535 -12.40740 -12.09947 -11.83699 -11.71246 -11.63132 -11.49204 -11.17456 -10.98860 -10.77656 -10.65594 -10.26352 -10.14972 -9.85313 -9.59964 -9.35151 -9.23207 -8.78664 -8.61910 -8.51994 -8.22426 -7.85562 -6.23582 -4.31620 1.30453 1.52903 1.57562 1.66452 3.18332 3.19234 3.27969 3.31552 3.73471 4.03392 4.20136 4.29744 4.50269 4.66771 4.71269 4.93911 5.02747 5.09600 5.16669 5.21804 5.24358 5.29186 5.35893 5.38633 5.63536 5.80946 5.83304 5.90722 5.92099 5.96203 6.05581 6.14561 6.15970 6.34494 6.35826 6.45458 6.57535 6.62533 6.66282 6.74991 6.94038 7.05263 7.15081 7.25453 7.42285 7.70211 7.98850 8.18591 8.20518 8.71335 8.88166 9.36738 10.83043 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007683 B = 0.006343 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3643.516124 B = 4412.994680 C = 6440.475722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.233 3.767 10 N -0.585 5.585 11 C 0.160 3.840 12 C -0.145 4.145 13 C -0.055 4.055 14 C -0.181 4.181 15 C 0.090 3.910 16 N -0.489 5.489 17 C 0.115 3.885 18 C 0.536 3.464 19 O -0.569 6.569 20 C -0.061 4.061 21 H 0.130 0.870 22 C -0.062 4.062 23 C -0.124 4.124 24 C -0.106 4.106 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.078 4.078 28 C -0.101 4.101 29 H 0.265 0.735 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.413 -10.837 3.315 11.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.114 3.886 10 N -0.314 5.314 11 C 0.036 3.964 12 C -0.148 4.148 13 C -0.082 4.082 14 C -0.201 4.201 15 C -0.068 4.068 16 N -0.197 5.197 17 C -0.043 4.043 18 C 0.324 3.676 19 O -0.450 6.450 20 C -0.082 4.082 21 H 0.148 0.852 22 C -0.099 4.099 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.096 4.096 28 C -0.102 4.102 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.090 -10.956 2.765 11.300 hybrid contribution 0.817 0.922 0.518 1.336 sum 0.727 -10.034 3.283 10.583 Atomic orbital electron populations 1.69926 1.05978 1.27280 1.49277 1.24928 0.94834 0.99244 0.94622 0.86486 0.80154 0.83320 0.77812 1.19624 1.20813 1.20826 1.21513 0.93658 0.90359 1.52535 0.91924 1.19573 0.87582 0.82349 0.99113 1.48198 1.45328 1.34321 1.03531 1.20155 0.95880 0.93355 0.87043 1.21421 0.98682 0.95949 0.98743 1.21654 0.98624 0.92202 0.95706 1.22097 0.96955 1.00408 1.00623 1.22684 0.95749 0.93554 0.94775 1.67700 1.28916 1.00795 1.22335 1.22795 0.89629 0.98540 0.93298 1.19963 0.80341 0.82047 0.85243 1.90551 1.36515 1.30306 1.87664 1.21303 0.90611 1.03265 0.92983 0.85233 1.21737 0.92692 1.00178 0.95267 1.22422 0.96686 0.97360 0.95951 1.20437 0.92829 0.99871 0.99258 1.20884 0.94665 1.00539 0.97978 1.20972 0.99377 0.98454 0.95151 1.20411 0.91347 0.98191 0.99698 1.21233 0.93340 0.98503 0.97114 0.92501 0.94693 0.93614 0.88973 0.89773 0.84542 0.85316 0.83319 0.82554 0.87469 0.88708 0.86853 0.86189 0.85831 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 13.29 55.43 0.74 -22.88 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.54 -13.39 9.11 -34.44 -0.31 -13.71 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.23 5.27 4.87 -5.19 -0.03 5.24 16 10 N -0.59 -11.72 2.44 -176.43 -0.43 -12.15 16 11 C 0.16 2.81 5.56 -5.19 -0.03 2.78 16 12 C -0.14 -2.41 5.48 -104.48 -0.57 -2.98 16 13 C -0.06 -0.86 9.86 -39.27 -0.39 -1.25 16 14 C -0.18 -2.45 10.11 -39.44 -0.40 -2.85 16 15 C 0.09 1.25 11.18 -17.55 -0.20 1.06 16 16 N -0.49 -8.09 10.36 -13.25 -0.14 -8.23 16 17 C 0.11 1.92 10.86 -17.55 -0.19 1.73 16 18 C 0.54 10.74 7.17 -10.99 -0.08 10.66 16 19 O -0.57 -11.85 14.91 5.55 0.08 -11.77 16 20 C -0.06 -1.13 2.88 -96.59 -0.28 -1.41 16 21 H 0.13 2.54 7.65 -51.93 -0.40 2.14 16 22 C -0.06 -0.97 7.91 -27.58 -0.22 -1.18 16 23 C -0.12 -2.04 7.32 -107.59 -0.79 -2.83 16 24 C -0.11 -1.52 10.05 -39.41 -0.40 -1.92 16 25 C -0.12 -1.67 10.03 -39.67 -0.40 -2.07 16 26 C -0.12 -1.81 10.06 -39.61 -0.40 -2.21 16 27 C -0.08 -1.39 9.62 -39.61 -0.38 -1.77 16 28 C -0.10 -1.86 6.15 -104.55 -0.64 -2.50 16 29 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.05 1.08 4.81 -51.93 -0.25 0.83 16 32 H 0.09 1.56 8.02 -51.93 -0.42 1.14 16 33 H 0.08 1.45 7.37 -51.93 -0.38 1.06 16 34 H 0.14 2.14 7.71 -52.48 -0.40 1.74 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.16 2.56 8.06 -52.49 -0.42 2.13 16 38 H 0.11 1.71 7.02 -51.93 -0.36 1.34 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 43 H 0.12 2.31 7.29 -52.48 -0.38 1.93 16 LS Contribution 366.11 15.07 5.52 5.52 Total: -1.00 -28.89 366.11 -10.56 -39.45 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.52 Total: 8.74 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -5.79 Total: -13.58 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.17 Total: -43.26 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.89 -10.56 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353777590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.101 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds