Wall clock time and date at job start Tue Mar 31 2020 13:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00187 * 2 1 4 4 H 1.48497 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47283 * 299.99477 * 3 2 1 6 6 H 1.48507 * 109.47219 * 59.99535 * 3 2 1 7 7 C 1.37882 * 119.99464 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99323 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46733 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47231 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99640 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00268 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00110 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47452 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47427 * 180.02562 * 15 14 13 17 17 C 1.50693 * 109.47132 * 179.97438 * 16 15 14 18 18 N 1.28675 * 124.92996 * 90.00089 * 17 16 15 19 19 C 1.32521 * 117.87673 * 179.97438 * 18 17 16 20 20 C 1.34609 * 113.16070 * 0.02562 * 19 18 17 21 21 S 1.70917 * 124.92929 * 269.99399 * 17 16 15 22 22 C 1.51002 * 125.22764 * 179.97438 * 20 19 18 23 23 C 1.53279 * 108.58010 * 343.93286 * 22 20 19 24 24 C 1.53145 * 108.99147 * 49.27844 * 23 22 20 25 25 C 1.52136 * 124.20151 * 180.02562 * 19 18 17 26 26 H 0.97001 * 119.99457 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47104 * 59.99990 * 9 7 2 28 28 H 1.08989 * 109.47052 * 299.99818 * 9 7 2 29 29 H 1.09005 * 109.47321 * 60.00497 * 10 9 7 30 30 H 1.09002 * 109.47606 * 300.00192 * 10 9 7 31 31 H 0.96999 * 120.00270 * 359.97438 * 13 11 10 32 32 H 1.09010 * 109.47370 * 59.99159 * 14 13 11 33 33 H 1.09002 * 109.46769 * 299.99762 * 14 13 11 34 34 H 1.08997 * 109.47070 * 59.99702 * 15 14 13 35 35 H 1.09002 * 109.47151 * 299.99787 * 15 14 13 36 36 H 1.08997 * 109.47269 * 59.99787 * 16 15 14 37 37 H 1.09002 * 109.46750 * 299.99995 * 16 15 14 38 38 H 1.08998 * 109.61958 * 103.66826 * 22 20 19 39 39 H 1.09004 * 109.61689 * 224.20694 * 22 20 19 40 40 H 1.09003 * 109.54876 * 169.13341 * 23 22 20 41 41 H 1.09000 * 109.54923 * 289.32496 * 23 22 20 42 42 H 1.09001 * 109.47443 * 49.60638 * 24 23 22 43 43 H 1.09000 * 109.47204 * 169.62138 * 24 23 22 44 44 H 1.09004 * 109.58967 * 42.70040 * 25 19 18 45 45 H 1.08997 * 109.71810 * 282.32301 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2787 -4.9672 0.0000 13 7 2.1655 -6.1344 0.0003 14 6 1.4329 -7.4031 -0.0009 15 6 2.4271 -8.5661 -0.0007 16 6 1.6620 -9.8911 -0.0026 17 6 2.6413 -11.0365 -0.0031 18 7 3.1193 -11.5976 1.0515 19 6 3.9736 -12.5974 0.8884 20 6 4.2173 -12.8799 -0.4050 21 16 3.2780 -11.7790 -1.4048 22 6 5.1448 -13.9638 -0.9001 23 6 6.0466 -14.4021 0.2593 24 6 5.1773 -14.6812 1.4888 25 6 4.6243 -13.3615 2.0318 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 2.8718 -3.6044 0.8906 30 1 2.8719 -3.6044 -0.8894 31 1 3.1354 -6.1345 0.0006 32 1 0.8071 -7.4606 -0.8916 33 1 0.8053 -7.4611 0.8884 34 1 3.0531 -8.5088 0.8897 35 1 3.0544 -8.5079 -0.8903 36 1 1.0363 -9.9481 -0.8933 37 1 1.0344 -9.9495 0.8867 38 1 4.5598 -14.8141 -1.2505 39 1 5.7575 -13.5772 -1.7145 40 1 6.5853 -15.3076 -0.0199 41 1 6.7592 -13.6093 0.4869 42 1 4.3507 -15.3342 1.2088 43 1 5.7795 -15.1663 2.2570 44 1 3.8821 -13.5666 2.8033 45 1 5.4367 -12.7702 2.4540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360156025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:17 Heat of formation + Delta-G solvation = -60.603718 kcal Electronic energy + Delta-G solvation = -23052.091749 eV Core-core repulsion = 19579.414963 eV Total energy + Delta-G solvation = -3472.676786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.16543 -40.65223 -37.82778 -36.68333 -35.54156 -34.16208 -32.92575 -31.83539 -30.45331 -28.42098 -27.12308 -24.96615 -24.25578 -23.38276 -22.72955 -21.86919 -21.03050 -19.45546 -18.91620 -18.79060 -17.41530 -17.05853 -16.90479 -16.41586 -16.33113 -15.89262 -15.77899 -15.26416 -15.11238 -14.78717 -14.61826 -14.41390 -14.16563 -14.09343 -13.68164 -13.42016 -13.26333 -13.21180 -12.85753 -12.83323 -12.64374 -12.48622 -12.42016 -11.97966 -11.91176 -11.79306 -11.67363 -11.62905 -11.40277 -11.27885 -10.75222 -10.57453 -10.52613 -10.16757 -10.05563 -9.50136 -8.17677 -6.31648 -0.28567 0.37091 0.77245 1.42537 1.44039 1.57346 1.73016 1.73463 2.27015 2.45538 2.99044 3.15370 3.67084 3.78048 3.93942 3.95752 3.98000 4.03819 4.14161 4.20144 4.25746 4.41756 4.53134 4.55077 4.56022 4.58343 4.60669 4.65604 4.79999 4.82565 4.96652 5.03175 5.07145 5.09436 5.13343 5.17312 5.20757 5.37739 5.40528 5.47133 5.53848 5.64364 5.86424 6.18407 6.62573 6.79609 6.87222 7.36110 7.38965 8.95232 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031105 B = 0.001638 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.953980 B =17085.582405 C =17327.509749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.040 3.960 10 C -0.120 4.120 11 C 0.510 3.490 12 O -0.590 6.590 13 N -0.720 5.720 14 C 0.120 3.880 15 C -0.106 4.106 16 C -0.040 4.040 17 C 0.044 3.956 18 N -0.501 5.501 19 C 0.042 3.958 20 C -0.231 4.231 21 S 0.132 5.868 22 C -0.043 4.043 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.041 4.041 26 H 0.263 0.737 27 H -0.017 1.017 28 H -0.018 1.018 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.416 0.584 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.634 -35.291 -1.621 38.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.002 3.998 10 C -0.160 4.160 11 C 0.298 3.702 12 O -0.470 6.470 13 N -0.373 5.373 14 C -0.004 4.004 15 C -0.145 4.145 16 C -0.081 4.081 17 C -0.235 4.235 18 N -0.215 5.215 19 C -0.089 4.089 20 C -0.351 4.351 21 S 0.390 5.610 22 C -0.083 4.083 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.081 4.081 26 H 0.071 0.929 27 H 0.001 0.999 28 H 0.000 1.000 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.253 0.747 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.297 -34.831 -2.214 37.716 hybrid contribution 0.255 0.767 0.820 1.151 sum 14.551 -34.064 -1.394 37.068 Atomic orbital electron populations 1.70192 1.08315 1.27717 1.51557 1.26153 0.95742 1.03982 0.94660 0.85254 0.79273 0.78042 0.77542 1.17627 1.20589 1.20669 1.21761 0.94030 0.91632 1.50647 0.90571 1.18707 0.93780 0.92540 0.94742 1.21640 0.99311 0.90158 1.04859 1.21329 0.87807 0.86825 0.74203 1.90657 1.16709 1.88445 1.51198 1.45895 1.11043 1.04809 1.75599 1.21313 0.94964 0.82204 1.01926 1.21601 0.97697 0.91190 1.04046 1.20201 0.94415 0.87876 1.05592 1.26874 1.03092 1.02400 0.91087 1.65852 1.12142 1.10326 1.33190 1.21304 0.97322 0.95270 0.94993 1.26452 1.07365 1.05646 0.95685 1.83819 1.38420 1.27137 1.11663 1.20344 0.95083 0.93865 0.99000 1.21632 0.97265 1.02544 0.93818 1.21579 0.99915 0.95359 0.98468 1.20459 0.99219 0.95306 0.93120 0.92879 0.99853 0.99970 0.87836 0.87660 0.74687 0.91840 0.92558 0.90717 0.89661 0.87641 0.88677 0.89075 0.89373 0.88693 0.91673 0.91614 0.89001 0.90445 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.07 13.29 21.45 0.28 -59.78 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.98 44.68 29.54 68.60 2.03 46.70 16 4 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 9 C 0.04 2.26 4.26 29.85 0.13 2.39 16 10 C -0.12 -4.86 5.64 29.85 0.17 -4.69 16 11 C 0.51 19.91 7.83 87.66 0.69 20.59 16 12 O -0.59 -29.38 15.98 -3.06 -0.05 -29.43 16 13 N -0.72 -19.21 5.56 -463.05 -2.57 -21.78 16 14 C 0.12 2.76 5.67 86.38 0.49 3.25 16 15 C -0.11 -1.73 5.31 30.59 0.16 -1.56 16 16 C -0.04 -0.63 5.80 29.85 0.17 -0.45 16 17 C 0.04 0.82 6.64 88.57 0.59 1.40 16 18 N -0.50 -11.07 10.51 -177.08 -1.86 -12.93 16 19 C 0.04 0.77 6.78 42.08 0.29 1.06 16 20 C -0.23 -3.55 6.39 24.95 0.16 -3.39 16 21 S 0.13 2.01 23.17 -56.49 -1.31 0.70 16 22 C -0.04 -0.39 6.28 30.04 0.19 -0.20 16 23 C -0.11 -0.75 5.95 30.74 0.18 -0.57 16 24 C -0.12 -0.90 5.87 30.66 0.18 -0.72 16 25 C -0.04 -0.55 6.29 30.32 0.19 -0.36 16 26 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 27 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 28 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 29 H 0.10 3.69 8.14 -2.38 -0.02 3.67 16 30 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 31 H 0.42 8.06 8.47 -92.71 -0.79 7.28 16 32 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.06 0.50 8.11 -2.39 -0.02 0.48 16 42 H 0.07 0.54 8.10 -2.39 -0.02 0.53 16 43 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -81.04 383.56 0.99 -80.05 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.19 Total: 10.74 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.28 Total: -14.26 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -4.15 Total: -94.50 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.05 Total: -29.43 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.31 Total: 0.70 kcal Total: -81.04 0.99 -80.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360156025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.443 kcal (2) G-P(sol) polarization free energy of solvation -81.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds