Wall clock time and date at job start Tue Mar 31 2020 13:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00014 * 2 1 4 4 H 1.48501 * 109.47365 * 240.00134 * 3 2 1 5 5 H 1.48501 * 109.47189 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47003 * 120.00280 * 3 2 1 7 7 C 1.37883 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47291 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47320 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47394 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00167 * 180.02562 * 12 11 10 14 14 O 1.21588 * 120.00053 * 354.91298 * 13 12 11 15 15 N 1.34781 * 119.99951 * 174.91889 * 13 12 11 16 16 C 1.46446 * 120.85411 * 184.63753 * 15 13 12 17 17 C 1.53272 * 108.50828 * 237.62174 * 16 15 13 18 18 O 1.42907 * 107.99323 * 32.76541 * 17 16 15 19 19 C 1.35865 * 119.47098 * 268.63473 * 18 17 16 20 20 C 1.39576 * 116.98802 * 230.39855 * 19 18 17 21 21 C 1.37828 * 120.51588 * 184.18113 * 20 19 18 22 22 C 1.38259 * 119.98633 * 359.91889 * 21 20 19 23 23 C 1.38269 * 119.77311 * 359.19753 * 22 21 20 24 24 F 1.35100 * 119.80755 * 180.20854 * 23 22 21 25 25 C 1.38023 * 123.62827 * 53.12340 * 19 18 17 26 26 C 1.46244 * 120.85585 * 4.90884 * 15 13 12 27 27 H 0.96997 * 119.99944 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47436 * 59.99514 * 9 7 2 29 29 H 1.09006 * 109.46776 * 299.99851 * 9 7 2 30 30 H 1.08994 * 109.47303 * 59.99519 * 10 9 7 31 31 H 1.09006 * 109.46519 * 299.99864 * 10 9 7 32 32 H 1.09006 * 109.47147 * 300.00274 * 11 10 9 33 33 H 1.09004 * 109.47304 * 59.99440 * 11 10 9 34 34 H 0.97007 * 120.00113 * 359.97438 * 12 11 10 35 35 H 1.09002 * 109.70807 * 357.34062 * 16 15 13 36 36 H 1.09004 * 109.70826 * 117.96079 * 16 15 13 37 37 H 1.08995 * 109.85810 * 273.10867 * 17 16 15 38 38 H 1.09003 * 109.76603 * 152.36173 * 17 16 15 39 39 H 1.08002 * 119.74751 * 4.18565 * 20 19 18 40 40 H 1.07997 * 120.00482 * 179.89403 * 21 20 19 41 41 H 1.07999 * 120.11547 * 179.21021 * 22 21 20 42 42 H 1.09004 * 109.19758 * 212.52111 * 26 15 13 43 43 H 1.09002 * 109.19934 * 331.84592 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4323 -6.1006 -0.0024 13 6 1.9830 -7.3713 -0.0034 14 8 0.7915 -7.5949 0.0894 15 7 2.8546 -8.3941 -0.1071 16 6 2.3817 -9.7762 -0.2116 17 6 2.9874 -10.5861 0.9401 18 8 3.1230 -9.7177 2.0669 19 6 4.2830 -9.0339 2.2481 20 6 4.8753 -9.1144 3.5094 21 6 6.0060 -8.3817 3.7997 22 6 6.5631 -7.5603 2.8371 23 6 5.9917 -7.4902 1.5800 24 9 6.5379 -6.6910 0.6376 25 6 4.8597 -8.2369 1.2800 26 6 4.2970 -8.1529 -0.1123 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5564 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 2.8713 -3.6048 0.8889 31 1 2.8726 -3.6039 -0.8910 32 1 0.8532 -5.0450 0.8877 33 1 0.8540 -5.0447 -0.8922 34 1 3.3860 -5.9234 -0.0026 35 1 1.2941 -9.7988 -0.1422 36 1 2.6987 -10.2022 -1.1635 37 1 3.9662 -10.9677 0.6496 38 1 2.3286 -11.4169 1.1929 39 1 4.4443 -9.7558 4.2639 40 1 6.4565 -8.4489 4.7789 41 1 7.4417 -6.9755 3.0663 42 1 4.7829 -8.8992 -0.7409 43 1 4.4930 -7.1603 -0.5180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374614890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:16 Heat of formation + Delta-G solvation = -80.019901 kcal Electronic energy + Delta-G solvation = -27375.831817 eV Core-core repulsion = 23336.099906 eV Total energy + Delta-G solvation = -4039.731911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.24246 -41.09308 -39.49212 -37.73258 -35.90734 -35.32293 -33.32858 -32.35563 -31.29634 -30.60089 -29.04971 -26.85191 -26.54215 -23.92065 -22.86240 -22.46020 -22.09477 -20.60211 -19.81560 -18.43683 -18.28745 -17.24206 -16.95930 -16.35928 -16.19703 -16.03583 -15.80080 -15.55760 -15.17662 -14.90346 -14.46190 -14.30699 -13.99399 -13.94227 -13.79582 -13.42171 -13.26532 -13.05109 -12.46022 -12.25023 -12.03306 -11.83764 -11.74837 -11.64945 -11.31495 -10.86190 -10.77667 -10.67093 -10.59367 -10.10470 -9.82195 -9.41768 -9.15840 -9.10521 -9.01424 -8.77482 -8.56459 -8.33803 -5.98619 -4.01574 0.72081 0.77892 2.52514 2.93241 3.21073 3.28887 3.34338 3.38782 3.41006 3.91387 3.97067 4.19933 4.40332 4.47103 4.51555 4.58258 4.63453 4.80516 4.91709 4.96658 5.09313 5.15535 5.27593 5.36971 5.53596 5.58537 5.69965 5.73596 5.84720 5.85485 5.94704 6.19300 6.22270 6.36064 6.55652 6.66064 6.77700 6.99823 7.05601 7.14974 7.67038 7.80280 8.00337 8.03250 8.41500 8.70824 9.04823 9.62257 11.12705 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.003108 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.034193 B = 9007.903277 C =10217.635292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.739 5.739 13 C 0.712 3.288 14 O -0.584 6.584 15 N -0.625 5.625 16 C 0.095 3.905 17 C 0.050 3.950 18 O -0.312 6.312 19 C 0.161 3.839 20 C -0.152 4.152 21 C -0.067 4.067 22 C -0.170 4.170 23 C 0.129 3.871 24 F -0.131 7.131 25 C -0.194 4.194 26 C 0.154 3.846 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.392 0.608 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.094 0.906 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.290 -25.036 3.539 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.394 5.394 13 C 0.413 3.587 14 O -0.462 6.462 15 N -0.362 5.362 16 C -0.029 4.029 17 C -0.025 4.025 18 O -0.227 6.227 19 C 0.116 3.884 20 C -0.170 4.170 21 C -0.085 4.085 22 C -0.189 4.189 23 C 0.109 3.891 24 F -0.110 7.110 25 C -0.197 4.197 26 C 0.029 3.971 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.227 0.773 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.037 -24.999 3.638 28.428 hybrid contribution 1.257 1.194 -0.294 1.758 sum 14.294 -23.805 3.344 27.967 Atomic orbital electron populations 1.69958 1.06049 1.26767 1.50536 1.25025 0.94850 0.99256 0.95295 0.86644 0.79562 0.83112 0.78589 1.20246 1.21275 1.20249 1.21171 0.92960 0.90955 1.50977 0.92710 1.19017 0.93810 0.90740 0.97682 1.21891 0.99801 0.93330 1.00815 1.21540 0.91283 0.84138 1.01928 1.45509 1.10535 1.04437 1.78899 1.15803 0.84742 0.80657 0.77478 1.90903 1.14125 1.83621 1.57504 1.46804 1.04552 1.06068 1.78811 1.22118 1.02847 0.80354 0.97542 1.23535 1.01478 0.91913 0.85610 1.85920 1.32093 1.57493 1.47161 1.18303 0.85868 0.91331 0.92948 1.21253 0.96315 1.02670 0.96791 1.20822 0.94479 0.94123 0.99073 1.21115 1.02840 1.02865 0.92107 1.17332 0.93135 0.91784 0.86845 1.91529 1.84613 1.71063 1.63771 1.20459 0.98648 1.01536 0.99104 1.20043 0.81236 1.03813 0.91977 0.92887 0.96237 0.96230 0.92818 0.92798 0.91814 0.91917 0.77281 0.87539 0.90449 0.91806 0.87031 0.84581 0.84294 0.84170 0.88781 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.12 -2.48 5.27 -26.73 -0.14 -2.63 16 11 C 0.13 2.55 5.68 -4.05 -0.02 2.53 16 12 N -0.74 -12.11 5.43 -65.23 -0.35 -12.47 16 13 C 0.71 11.94 8.30 -86.92 -0.72 11.22 16 14 O -0.58 -11.99 15.78 5.29 0.08 -11.90 16 15 N -0.62 -7.74 2.17 -181.05 -0.39 -8.13 16 16 C 0.10 0.90 6.47 -3.93 -0.03 0.88 16 17 C 0.05 0.39 6.72 37.30 0.25 0.64 16 18 O -0.31 -3.55 9.41 -19.32 -0.18 -3.73 16 19 C 0.16 1.74 5.98 -39.16 -0.23 1.50 16 20 C -0.15 -1.37 9.88 -39.23 -0.39 -1.75 16 21 C -0.07 -0.51 10.03 -39.72 -0.40 -0.91 16 22 C -0.17 -1.47 10.03 -39.56 -0.40 -1.87 16 23 C 0.13 1.32 7.22 -39.33 -0.28 1.04 16 24 F -0.13 -1.42 16.30 2.25 0.04 -1.39 16 25 C -0.19 -2.05 5.76 -104.60 -0.60 -2.65 16 26 C 0.15 1.54 5.05 -5.47 -0.03 1.51 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.39 5.63 6.21 -40.82 -0.25 5.38 16 35 H 0.11 1.21 7.00 -51.93 -0.36 0.85 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.37 7.98 -51.93 -0.41 -0.05 16 38 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.09 0.70 8.04 -51.93 -0.42 0.28 16 43 H 0.09 0.95 5.57 -51.93 -0.29 0.66 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -35.08 359.32 -9.15 -44.23 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.93 Total: 1.29 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.54 Total: -3.62 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.01 Total: -47.08 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.10 Total: -15.64 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.08 -9.15 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374614890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.788 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds