Wall clock time and date at job start Tue Mar 31 2020 13:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00014 * 2 1 4 4 H 1.48501 * 109.47365 * 240.00134 * 3 2 1 5 5 H 1.48501 * 109.47189 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47003 * 120.00280 * 3 2 1 7 7 C 1.37883 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47291 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47320 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47394 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00167 * 180.02562 * 12 11 10 14 14 O 1.21588 * 120.00053 * 354.91298 * 13 12 11 15 15 N 1.34781 * 119.99951 * 174.91889 * 13 12 11 16 16 C 1.46446 * 120.85411 * 184.63753 * 15 13 12 17 17 C 1.53272 * 108.50828 * 237.62174 * 16 15 13 18 18 O 1.42907 * 107.99323 * 32.76541 * 17 16 15 19 19 C 1.35865 * 119.47098 * 268.63473 * 18 17 16 20 20 C 1.39576 * 116.98802 * 230.39855 * 19 18 17 21 21 C 1.37828 * 120.51588 * 184.18113 * 20 19 18 22 22 C 1.38259 * 119.98633 * 359.91889 * 21 20 19 23 23 C 1.38269 * 119.77311 * 359.19753 * 22 21 20 24 24 F 1.35100 * 119.80755 * 180.20854 * 23 22 21 25 25 C 1.38023 * 123.62827 * 53.12340 * 19 18 17 26 26 C 1.46244 * 120.85585 * 4.90884 * 15 13 12 27 27 H 0.96997 * 119.99944 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47436 * 59.99514 * 9 7 2 29 29 H 1.09006 * 109.46776 * 299.99851 * 9 7 2 30 30 H 1.08994 * 109.47303 * 59.99519 * 10 9 7 31 31 H 1.09006 * 109.46519 * 299.99864 * 10 9 7 32 32 H 1.09006 * 109.47147 * 300.00274 * 11 10 9 33 33 H 1.09004 * 109.47304 * 59.99440 * 11 10 9 34 34 H 0.97007 * 120.00113 * 359.97438 * 12 11 10 35 35 H 1.09002 * 109.70807 * 357.34062 * 16 15 13 36 36 H 1.09004 * 109.70826 * 117.96079 * 16 15 13 37 37 H 1.08995 * 109.85810 * 273.10867 * 17 16 15 38 38 H 1.09003 * 109.76603 * 152.36173 * 17 16 15 39 39 H 1.08002 * 119.74751 * 4.18565 * 20 19 18 40 40 H 1.07997 * 120.00482 * 179.89403 * 21 20 19 41 41 H 1.07999 * 120.11547 * 179.21021 * 22 21 20 42 42 H 1.09004 * 109.19758 * 212.52111 * 26 15 13 43 43 H 1.09002 * 109.19934 * 331.84592 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4323 -6.1006 -0.0024 13 6 1.9830 -7.3713 -0.0034 14 8 0.7915 -7.5949 0.0894 15 7 2.8546 -8.3941 -0.1071 16 6 2.3817 -9.7762 -0.2116 17 6 2.9874 -10.5861 0.9401 18 8 3.1230 -9.7177 2.0669 19 6 4.2830 -9.0339 2.2481 20 6 4.8753 -9.1144 3.5094 21 6 6.0060 -8.3817 3.7997 22 6 6.5631 -7.5603 2.8371 23 6 5.9917 -7.4902 1.5800 24 9 6.5379 -6.6910 0.6376 25 6 4.8597 -8.2369 1.2800 26 6 4.2970 -8.1529 -0.1123 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5564 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 2.8713 -3.6048 0.8889 31 1 2.8726 -3.6039 -0.8910 32 1 0.8532 -5.0450 0.8877 33 1 0.8540 -5.0447 -0.8922 34 1 3.3860 -5.9234 -0.0026 35 1 1.2941 -9.7988 -0.1422 36 1 2.6987 -10.2022 -1.1635 37 1 3.9662 -10.9677 0.6496 38 1 2.3286 -11.4169 1.1929 39 1 4.4443 -9.7558 4.2639 40 1 6.4565 -8.4489 4.7789 41 1 7.4417 -6.9755 3.0663 42 1 4.7829 -8.8992 -0.7409 43 1 4.4930 -7.1603 -0.5180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374614890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:15 Heat of formation + Delta-G solvation = -101.905100 kcal Electronic energy + Delta-G solvation = -27376.780830 eV Core-core repulsion = 23336.099906 eV Total energy + Delta-G solvation = -4040.680924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.00386 -41.99487 -40.56475 -38.45753 -37.16516 -36.71264 -35.23831 -33.29364 -32.86381 -31.45063 -29.96702 -28.36665 -27.58873 -25.34732 -24.03146 -23.38742 -22.80107 -22.35360 -21.03261 -19.44799 -19.14227 -18.52039 -18.04832 -17.81259 -17.14699 -16.80184 -16.72668 -16.59149 -16.50483 -16.18682 -15.95089 -15.39421 -15.28314 -14.88821 -14.62124 -14.33976 -14.30057 -14.02493 -13.92153 -13.68801 -13.54076 -13.09658 -12.76154 -12.71660 -12.56709 -12.49404 -12.41447 -11.96429 -11.71902 -11.65503 -11.48463 -11.35059 -11.18667 -10.55466 -10.34970 -9.83291 -9.72349 -9.45085 -8.19785 -6.31677 0.03722 0.09784 1.40830 1.44542 1.46497 1.52632 1.99640 2.28293 2.41421 2.49996 2.84067 3.13648 3.22134 3.47900 3.67929 3.84417 3.94355 4.02600 4.08976 4.12035 4.17011 4.27802 4.38915 4.44646 4.50549 4.57258 4.60692 4.76300 4.90242 4.91605 4.94136 5.05666 5.11156 5.19453 5.30687 5.34207 5.41060 5.50103 5.67807 5.69853 5.75593 5.82367 6.21406 6.46779 6.79536 6.85285 7.37669 7.42171 8.92284 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.003108 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.034193 B = 9007.903277 C =10217.635292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.733 5.733 13 C 0.706 3.294 14 O -0.629 6.629 15 N -0.617 5.617 16 C 0.088 3.912 17 C 0.051 3.949 18 O -0.338 6.338 19 C 0.142 3.858 20 C -0.158 4.158 21 C -0.060 4.060 22 C -0.172 4.172 23 C 0.112 3.888 24 F -0.139 7.139 25 C -0.205 4.205 26 C 0.151 3.849 27 H 0.264 0.736 28 H -0.005 1.005 29 H -0.008 1.008 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.404 0.596 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.158 0.842 42 H 0.126 0.874 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.185 -25.775 3.923 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.011 4.011 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.389 5.389 13 C 0.408 3.592 14 O -0.511 6.511 15 N -0.353 5.353 16 C -0.035 4.035 17 C -0.024 4.024 18 O -0.253 6.253 19 C 0.097 3.903 20 C -0.177 4.177 21 C -0.077 4.077 22 C -0.191 4.191 23 C 0.092 3.908 24 F -0.117 7.117 25 C -0.208 4.208 26 C 0.027 3.973 27 H 0.073 0.927 28 H 0.013 0.987 29 H 0.010 0.990 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.241 0.759 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.151 0.849 39 H 0.166 0.834 40 H 0.188 0.812 41 H 0.176 0.824 42 H 0.144 0.856 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.000 -25.786 4.017 30.611 hybrid contribution 0.359 1.332 -0.383 1.432 sum 16.359 -24.454 3.634 29.645 Atomic orbital electron populations 1.70108 1.07949 1.27915 1.51495 1.26027 0.95758 1.03545 0.94656 0.85458 0.78205 0.77837 0.79290 1.18952 1.21004 1.19056 1.21629 0.93692 0.91992 1.50806 0.91658 1.18915 0.94307 0.92740 0.95168 1.21587 0.98510 0.91886 1.01815 1.21115 0.91261 0.84534 1.00591 1.45218 1.10598 1.03962 1.79079 1.15995 0.84714 0.81271 0.77260 1.90869 1.16303 1.84346 1.59539 1.46830 1.05155 1.06067 1.77228 1.22408 1.01678 0.79151 1.00249 1.23735 1.03175 0.91475 0.84023 1.85892 1.32726 1.58133 1.48525 1.18563 0.86072 0.91930 0.93769 1.21527 0.96708 1.02971 0.96472 1.21194 0.93677 0.92761 1.00110 1.21431 1.03234 1.02850 0.91568 1.17536 0.93593 0.92176 0.87449 1.91507 1.84738 1.71328 1.64149 1.20456 0.99061 1.02086 0.99201 1.20255 0.79622 1.04704 0.92681 0.92746 0.98681 0.98987 0.91983 0.91379 0.93682 0.92940 0.75899 0.90028 0.87063 0.89282 0.84933 0.83397 0.81193 0.82396 0.85645 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.43 4.97 29.85 0.15 1.57 16 10 C -0.10 -4.15 5.27 30.59 0.16 -3.99 16 11 C 0.15 5.86 5.68 86.38 0.49 6.35 16 12 N -0.73 -24.14 5.43 -478.54 -2.60 -26.74 16 13 C 0.71 23.97 8.30 179.05 1.49 25.46 16 14 O -0.63 -26.77 15.78 -3.99 -0.06 -26.84 16 15 N -0.62 -14.77 2.17 -844.97 -1.83 -16.61 16 16 C 0.09 1.56 6.47 86.48 0.56 2.12 16 17 C 0.05 0.68 6.72 72.07 0.48 1.17 16 18 O -0.34 -7.31 9.41 -92.04 -0.87 -8.18 16 19 C 0.14 2.86 5.98 22.54 0.13 2.99 16 20 C -0.16 -2.55 9.88 22.50 0.22 -2.33 16 21 C -0.06 -0.76 10.03 22.18 0.22 -0.53 16 22 C -0.17 -2.57 10.03 22.28 0.22 -2.35 16 23 C 0.11 2.12 7.22 22.43 0.16 2.28 16 24 F -0.14 -2.82 16.30 44.97 0.73 -2.08 16 25 C -0.20 -4.02 5.76 -19.85 -0.11 -4.14 16 26 C 0.15 2.77 5.05 85.59 0.43 3.20 16 27 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 28 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 32 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.40 11.35 6.21 -92.70 -0.58 10.78 16 35 H 0.08 1.88 7.00 -2.39 -0.02 1.87 16 36 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.09 0.75 7.98 -2.39 -0.02 0.73 16 38 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.13 1.50 8.04 -2.39 -0.02 1.48 16 43 H 0.09 1.70 5.57 -2.39 -0.01 1.68 16 Total: -1.00 -77.96 359.32 3.45 -74.52 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.46 Total: 15.89 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.31 Total: 1.26 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -4.15 Total: -101.07 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.93 Total: -35.02 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.73 Total: -2.08 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -77.96 3.45 -74.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374614890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.389 kcal (2) G-P(sol) polarization free energy of solvation -77.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds