Wall clock time and date at job start Tue Mar 31 2020 13:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00113 * 2 1 4 4 H 1.48499 * 109.46870 * 269.99649 * 3 2 1 5 5 H 1.48500 * 109.47171 * 29.99128 * 3 2 1 6 6 H 1.48495 * 109.47219 * 149.99439 * 3 2 1 7 7 C 1.37871 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00363 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47044 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47457 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00377 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99772 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00270 * 180.02562 * 13 12 11 16 16 C 1.47583 * 134.49477 * 179.97438 * 15 13 12 17 17 C 1.53945 * 86.11406 * 155.35539 * 16 15 13 18 18 O 1.42903 * 113.74155 * 137.95696 * 17 16 15 19 19 C 1.50704 * 113.74101 * 269.15093 * 17 16 15 20 20 C 1.38233 * 119.97360 * 27.80750 * 19 17 16 21 21 C 1.38200 * 120.02645 * 179.76449 * 20 19 17 22 22 C 1.38463 * 119.97295 * 0.50696 * 21 20 19 23 23 F 1.35101 * 120.02655 * 179.76431 * 22 21 20 24 24 C 1.38463 * 119.94448 * 359.74550 * 22 21 20 25 25 C 1.38193 * 119.97609 * 0.02562 * 24 22 21 26 26 C 1.47820 * 134.45503 * 359.85967 * 15 13 12 27 27 H 0.97002 * 119.99895 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46719 * 60.00598 * 9 7 2 29 29 H 1.08990 * 109.47544 * 300.00189 * 9 7 2 30 30 H 1.09002 * 109.46454 * 60.00877 * 10 9 7 31 31 H 1.08994 * 109.47489 * 300.00208 * 10 9 7 32 32 H 1.09005 * 109.47146 * 60.00490 * 11 10 9 33 33 H 1.09002 * 109.47097 * 300.00606 * 11 10 9 34 34 H 0.97007 * 119.99442 * 0.02562 * 12 11 10 35 35 H 1.08995 * 113.76666 * 41.05583 * 16 15 13 36 36 H 1.08995 * 113.86960 * 269.66688 * 16 15 13 37 37 H 0.96700 * 114.00311 * 181.92380 * 18 17 16 38 38 H 1.08000 * 119.99119 * 0.02562 * 20 19 17 39 39 H 1.08003 * 120.01636 * 180.24608 * 21 20 19 40 40 H 1.08001 * 120.00479 * 179.97438 * 24 22 21 41 41 H 1.07998 * 119.98416 * 180.02562 * 25 24 22 42 42 H 1.08998 * 113.76413 * 90.37879 * 26 15 13 43 43 H 1.08997 * 113.83261 * 318.92421 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 -0.0001 12 7 2.4323 -6.1006 0.0005 13 6 1.9831 -7.3713 -0.0004 14 8 0.7877 -7.5934 -0.0013 15 7 2.8589 -8.3957 0.0007 16 6 2.7308 -9.8659 0.0006 17 6 4.1313 -9.8832 -0.6382 18 8 4.9933 -10.8920 -0.1077 19 6 4.1112 -9.8606 -2.1449 20 6 3.0538 -9.2718 -2.8128 21 6 3.0366 -9.2462 -4.1944 22 6 4.0740 -9.8199 -4.9099 23 9 4.0560 -9.7996 -6.2606 24 6 5.1301 -10.4139 -4.2398 25 6 5.1474 -10.4341 -2.8581 26 6 4.3336 -8.4969 0.0003 27 1 -0.4850 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8898 29 1 0.6240 -2.5567 0.8902 30 1 2.8718 -3.6042 0.8907 31 1 2.8720 -3.6043 -0.8894 32 1 0.8540 -5.0446 -0.8904 33 1 0.8533 -5.0450 0.8896 34 1 3.3860 -5.9233 0.0016 35 1 1.9441 -10.2383 -0.6554 36 1 2.6972 -10.3057 0.9973 37 1 5.8834 -10.8873 -0.4855 38 1 2.2427 -8.8280 -2.2546 39 1 2.2123 -8.7827 -4.7160 40 1 5.9396 -10.8620 -4.7969 41 1 5.9713 -10.8970 -2.3354 42 1 4.7717 -8.5322 0.9977 43 1 4.8242 -7.7782 -0.6560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378103487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:47 Heat of formation + Delta-G solvation = -63.735088 kcal Electronic energy + Delta-G solvation = -26345.545310 eV Core-core repulsion = 22306.519562 eV Total energy + Delta-G solvation = -4039.025748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.25289 -41.42425 -39.34652 -38.11581 -35.98792 -35.31042 -33.31727 -31.62538 -31.45183 -30.97811 -28.58957 -26.86687 -26.21891 -23.78326 -23.40536 -22.81604 -21.05542 -20.60090 -19.45238 -18.78688 -18.09470 -17.57751 -16.82016 -16.54798 -16.18933 -15.94275 -15.82819 -15.30466 -14.86782 -14.67281 -14.47547 -14.32910 -13.92265 -13.78854 -13.61069 -13.55802 -13.38483 -13.16485 -12.64957 -12.41336 -12.29762 -11.82428 -11.76166 -11.58274 -11.34667 -10.91829 -10.81438 -10.71166 -10.60583 -10.14740 -9.88535 -9.56507 -9.47015 -9.14391 -9.10370 -9.02777 -8.61341 -8.38455 -6.03006 -4.06234 0.59794 0.77989 2.26780 3.00859 3.19203 3.29799 3.36257 3.38854 3.62552 3.76372 3.82524 3.88848 4.07562 4.29559 4.42503 4.43582 4.59497 4.80987 4.97216 5.02168 5.07389 5.23420 5.29360 5.32835 5.35537 5.42881 5.56035 5.67881 5.70890 5.77707 5.81356 5.96755 6.14968 6.40847 6.47782 6.58934 6.80286 6.97495 6.98783 7.13015 7.62189 7.74789 7.95643 8.00099 8.36447 8.63876 9.00392 9.58037 11.08296 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.002462 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.543780 B =11369.018854 C =12381.114360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.736 5.736 13 C 0.729 3.271 14 O -0.585 6.585 15 N -0.664 5.664 16 C 0.148 3.852 17 C 0.137 3.863 18 O -0.537 6.537 19 C -0.110 4.110 20 C -0.066 4.066 21 C -0.148 4.148 22 C 0.104 3.896 23 F -0.138 7.138 24 C -0.153 4.153 25 C -0.081 4.081 26 C 0.084 3.916 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.394 0.606 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.381 0.619 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.097 0.903 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.814 -25.241 -4.968 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.390 5.390 13 C 0.432 3.568 14 O -0.463 6.463 15 N -0.407 5.407 16 C 0.024 3.976 17 C 0.095 3.905 18 O -0.342 6.342 19 C -0.110 4.110 20 C -0.085 4.085 21 C -0.167 4.167 22 C 0.084 3.916 23 F -0.117 7.117 24 C -0.172 4.172 25 C -0.099 4.099 26 C -0.040 4.040 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.227 0.773 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.230 0.770 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.115 0.885 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.057 -25.218 -4.667 28.339 hybrid contribution 1.427 1.280 -0.581 2.003 sum 13.484 -23.937 -5.248 27.971 Atomic orbital electron populations 1.69964 1.06061 1.26708 1.50514 1.25027 0.94856 0.99300 0.95266 0.86583 0.79799 0.83441 0.78099 1.20655 1.21190 1.19897 1.21195 0.92975 0.90937 1.50994 0.92668 1.19024 0.93828 0.90765 0.97710 1.21891 0.99808 0.93261 1.00825 1.21563 0.91243 0.84015 1.02000 1.45354 1.10582 1.04081 1.78954 1.15366 0.83880 0.79842 0.77736 1.90952 1.13329 1.83568 1.58425 1.48745 1.06431 1.05844 1.79661 1.23016 0.93958 0.79022 1.01562 1.21664 0.92414 0.87749 0.88683 1.86607 1.26444 1.54726 1.66456 1.19798 0.96084 1.01075 0.94063 1.21034 0.97878 0.96297 0.93248 1.21256 0.99040 1.01708 0.94717 1.17806 0.96452 1.00312 0.76983 1.91521 1.96542 1.94607 1.28995 1.21081 0.98752 1.02408 0.94912 1.20681 0.98001 0.98147 0.93060 1.23937 0.82457 0.96056 1.01536 0.92904 0.96242 0.96211 0.92758 0.92788 0.91837 0.91820 0.77334 0.89070 0.88573 0.76997 0.84247 0.84250 0.84411 0.84867 0.88479 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.47 16 11 C 0.13 2.38 5.67 -4.04 -0.02 2.36 16 12 N -0.74 -10.74 5.56 -65.22 -0.36 -11.10 16 13 C 0.73 11.13 8.24 -86.93 -0.72 10.41 16 14 O -0.59 -11.41 17.07 5.29 0.09 -11.32 16 15 N -0.66 -7.29 2.51 -183.88 -0.46 -7.76 16 16 C 0.15 1.36 7.66 -2.97 -0.02 1.33 16 17 C 0.14 0.96 1.90 -90.84 -0.17 0.79 16 18 O -0.54 -3.09 13.26 -35.23 -0.47 -3.56 16 19 C -0.11 -0.83 5.25 -104.62 -0.55 -1.38 16 20 C -0.07 -0.63 8.73 -39.60 -0.35 -0.97 16 21 C -0.15 -1.40 10.03 -39.51 -0.40 -1.79 16 22 C 0.10 0.95 7.30 -39.42 -0.29 0.66 16 23 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 24 C -0.15 -1.07 10.03 -39.52 -0.40 -1.46 16 25 C -0.08 -0.48 9.38 -39.60 -0.37 -0.85 16 26 C 0.08 0.62 7.84 -2.83 -0.02 0.59 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.39 4.72 8.08 -40.82 -0.33 4.39 16 35 H 0.09 0.87 7.33 -51.93 -0.38 0.48 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.38 0.70 7.26 45.56 0.33 1.03 16 38 H 0.14 1.55 5.80 -52.49 -0.30 1.24 16 39 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.13 0.35 6.41 -52.49 -0.34 0.01 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -34.39 366.90 -9.12 -43.51 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.21 Total: 1.35 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -3.99 Total: -5.63 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.09 Total: -44.90 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.38 Total: -14.88 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.39 -9.12 -43.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378103487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.224 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds