Wall clock time and date at job start Tue Mar 31 2020 13:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00113 * 2 1 4 4 H 1.48499 * 109.46870 * 269.99649 * 3 2 1 5 5 H 1.48500 * 109.47171 * 29.99128 * 3 2 1 6 6 H 1.48495 * 109.47219 * 149.99439 * 3 2 1 7 7 C 1.37871 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00363 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47044 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47457 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00377 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99772 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00270 * 180.02562 * 13 12 11 16 16 C 1.47583 * 134.49477 * 179.97438 * 15 13 12 17 17 C 1.53945 * 86.11406 * 155.35539 * 16 15 13 18 18 O 1.42903 * 113.74155 * 137.95696 * 17 16 15 19 19 C 1.50704 * 113.74101 * 269.15093 * 17 16 15 20 20 C 1.38233 * 119.97360 * 27.80750 * 19 17 16 21 21 C 1.38200 * 120.02645 * 179.76449 * 20 19 17 22 22 C 1.38463 * 119.97295 * 0.50696 * 21 20 19 23 23 F 1.35101 * 120.02655 * 179.76431 * 22 21 20 24 24 C 1.38463 * 119.94448 * 359.74550 * 22 21 20 25 25 C 1.38193 * 119.97609 * 0.02562 * 24 22 21 26 26 C 1.47820 * 134.45503 * 359.85967 * 15 13 12 27 27 H 0.97002 * 119.99895 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46719 * 60.00598 * 9 7 2 29 29 H 1.08990 * 109.47544 * 300.00189 * 9 7 2 30 30 H 1.09002 * 109.46454 * 60.00877 * 10 9 7 31 31 H 1.08994 * 109.47489 * 300.00208 * 10 9 7 32 32 H 1.09005 * 109.47146 * 60.00490 * 11 10 9 33 33 H 1.09002 * 109.47097 * 300.00606 * 11 10 9 34 34 H 0.97007 * 119.99442 * 0.02562 * 12 11 10 35 35 H 1.08995 * 113.76666 * 41.05583 * 16 15 13 36 36 H 1.08995 * 113.86960 * 269.66688 * 16 15 13 37 37 H 0.96700 * 114.00311 * 181.92380 * 18 17 16 38 38 H 1.08000 * 119.99119 * 0.02562 * 20 19 17 39 39 H 1.08003 * 120.01636 * 180.24608 * 21 20 19 40 40 H 1.08001 * 120.00479 * 179.97438 * 24 22 21 41 41 H 1.07998 * 119.98416 * 180.02562 * 25 24 22 42 42 H 1.08998 * 113.76413 * 90.37879 * 26 15 13 43 43 H 1.08997 * 113.83261 * 318.92421 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 -0.0001 12 7 2.4323 -6.1006 0.0005 13 6 1.9831 -7.3713 -0.0004 14 8 0.7877 -7.5934 -0.0013 15 7 2.8589 -8.3957 0.0007 16 6 2.7308 -9.8659 0.0006 17 6 4.1313 -9.8832 -0.6382 18 8 4.9933 -10.8920 -0.1077 19 6 4.1112 -9.8606 -2.1449 20 6 3.0538 -9.2718 -2.8128 21 6 3.0366 -9.2462 -4.1944 22 6 4.0740 -9.8199 -4.9099 23 9 4.0560 -9.7996 -6.2606 24 6 5.1301 -10.4139 -4.2398 25 6 5.1474 -10.4341 -2.8581 26 6 4.3336 -8.4969 0.0003 27 1 -0.4850 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8898 29 1 0.6240 -2.5567 0.8902 30 1 2.8718 -3.6042 0.8907 31 1 2.8720 -3.6043 -0.8894 32 1 0.8540 -5.0446 -0.8904 33 1 0.8533 -5.0450 0.8896 34 1 3.3860 -5.9233 0.0016 35 1 1.9441 -10.2383 -0.6554 36 1 2.6972 -10.3057 0.9973 37 1 5.8834 -10.8873 -0.4855 38 1 2.2427 -8.8280 -2.2546 39 1 2.2123 -8.7827 -4.7160 40 1 5.9396 -10.8620 -4.7969 41 1 5.9713 -10.8970 -2.3354 42 1 4.7717 -8.5322 0.9977 43 1 4.8242 -7.7782 -0.6560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378103487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:47 Heat of formation + Delta-G solvation = -87.452674 kcal Electronic energy + Delta-G solvation = -26346.573782 eV Core-core repulsion = 22306.519562 eV Total energy + Delta-G solvation = -4040.054220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.97187 -42.17362 -40.35498 -38.87745 -37.00375 -36.47256 -35.18999 -33.12722 -32.13025 -31.85111 -29.72021 -28.04637 -27.35933 -25.00045 -24.17690 -23.93388 -22.32178 -21.85734 -20.44321 -19.37773 -19.05198 -18.51022 -18.25613 -17.51989 -17.36415 -16.89606 -16.66908 -16.50605 -16.09840 -15.96910 -15.58802 -15.27141 -14.82664 -14.77504 -14.38427 -14.29682 -14.26282 -14.02879 -13.82752 -13.73706 -13.54867 -13.23615 -13.05814 -12.75551 -12.55933 -12.37676 -12.20351 -11.98335 -11.70724 -11.68918 -11.41583 -11.22687 -11.07768 -10.55792 -10.32440 -10.15856 -9.67090 -9.62984 -8.19721 -6.31364 -0.03125 0.18327 1.29644 1.41782 1.43064 1.54079 2.03910 2.39994 2.41499 2.81465 3.07433 3.14180 3.16267 3.27434 3.47060 3.68397 3.86490 3.97272 4.12427 4.20584 4.22442 4.33518 4.42744 4.47563 4.53453 4.54538 4.63741 4.69970 4.86840 4.93190 4.95134 4.98425 5.08834 5.15381 5.18484 5.37421 5.43308 5.52376 5.70035 5.80048 5.83697 6.09661 6.21994 6.75485 6.85571 6.92084 7.38312 7.47770 8.92513 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.002462 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.543780 B =11369.018854 C =12381.114360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.099 4.099 11 C 0.150 3.850 12 N -0.726 5.726 13 C 0.726 3.274 14 O -0.637 6.637 15 N -0.663 5.663 16 C 0.135 3.865 17 C 0.161 3.839 18 O -0.536 6.536 19 C -0.110 4.110 20 C -0.081 4.081 21 C -0.166 4.166 22 C 0.084 3.916 23 F -0.149 7.149 24 C -0.147 4.147 25 C -0.067 4.067 26 C 0.086 3.914 27 H 0.263 0.737 28 H -0.008 1.008 29 H -0.008 1.008 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.409 0.591 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.402 0.598 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.163 0.837 41 H 0.178 0.822 42 H 0.118 0.882 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.989 -26.297 -4.519 32.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.137 4.137 11 C 0.026 3.974 12 N -0.381 5.381 13 C 0.429 3.571 14 O -0.519 6.519 15 N -0.404 5.404 16 C 0.012 3.988 17 C 0.118 3.882 18 O -0.345 6.345 19 C -0.110 4.110 20 C -0.099 4.099 21 C -0.185 4.185 22 C 0.065 3.935 23 F -0.128 7.128 24 C -0.165 4.165 25 C -0.084 4.084 26 C -0.036 4.036 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.011 0.989 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.245 0.755 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.255 0.745 38 H 0.134 0.866 39 H 0.149 0.851 40 H 0.181 0.819 41 H 0.195 0.805 42 H 0.136 0.864 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.331 -26.319 -4.224 31.260 hybrid contribution 0.148 1.486 -0.723 1.659 sum 16.479 -24.833 -4.946 30.211 Atomic orbital electron populations 1.70114 1.07984 1.27805 1.51697 1.26031 0.95739 1.03591 0.94777 0.85410 0.78720 0.78241 0.78449 1.19847 1.21075 1.18303 1.21676 0.93765 0.91955 1.50453 0.91465 1.18933 0.94422 0.92914 0.95086 1.21577 0.98429 0.91584 1.02088 1.21108 0.91286 0.84522 1.00514 1.44973 1.10791 1.03308 1.79032 1.15459 0.83714 0.80476 0.77475 1.90909 1.15910 1.84421 1.60639 1.48696 1.08015 1.05721 1.77953 1.23242 0.95553 0.77751 1.02251 1.21161 0.91246 0.87915 0.87893 1.86595 1.27705 1.53743 1.66485 1.19905 0.95926 1.00757 0.94452 1.20881 0.98343 0.97601 0.93115 1.21256 0.99522 1.02693 0.95019 1.18055 0.97359 1.01433 0.76648 1.91489 1.96668 1.94816 1.29826 1.21432 0.98312 1.01177 0.95586 1.21115 0.98184 0.96508 0.92620 1.24233 0.79792 0.96469 1.03075 0.92812 0.99004 0.98914 0.91311 0.91428 0.93500 0.93431 0.75463 0.90205 0.87642 0.74516 0.86635 0.85140 0.81912 0.80525 0.86430 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.42 13.29 21.44 0.28 -57.14 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 11 C 0.15 5.46 5.67 86.38 0.49 5.95 16 12 N -0.73 -20.97 5.56 -478.53 -2.66 -23.63 16 13 C 0.73 22.47 8.24 179.06 1.48 23.95 16 14 O -0.64 -26.09 17.07 -4.00 -0.07 -26.16 16 15 N -0.66 -13.98 2.51 -857.76 -2.15 -16.13 16 16 C 0.13 2.34 7.66 86.49 0.66 3.00 16 17 C 0.16 1.78 1.90 -10.88 -0.02 1.76 16 18 O -0.54 -3.74 13.26 -148.98 -1.98 -5.71 16 19 C -0.11 -1.40 5.25 -19.86 -0.10 -1.51 16 20 C -0.08 -1.54 8.73 22.26 0.19 -1.34 16 21 C -0.17 -3.26 10.03 22.31 0.22 -3.04 16 22 C 0.08 1.48 7.30 22.38 0.16 1.65 16 23 F -0.15 -3.04 17.27 44.97 0.78 -2.26 16 24 C -0.15 -1.62 10.03 22.31 0.22 -1.40 16 25 C -0.07 -0.52 9.38 22.26 0.21 -0.31 16 26 C 0.09 1.00 7.84 86.44 0.68 1.68 16 27 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.41 9.09 8.08 -92.70 -0.75 8.34 16 35 H 0.08 1.56 7.33 -2.39 -0.02 1.55 16 36 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.40 -0.89 7.26 -74.06 -0.54 -1.43 16 38 H 0.12 2.75 5.80 -2.91 -0.02 2.73 16 39 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 41 H 0.18 -0.19 6.41 -2.91 -0.02 -0.21 16 42 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 0.93 8.09 -2.39 -0.02 0.91 16 Total: -1.00 -78.04 366.90 1.20 -76.84 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -0.23 Total: 9.96 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.20 Total: -1.54 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -4.53 Total: -96.90 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -2.04 Total: -31.87 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.26 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -78.04 1.20 -76.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378103487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.608 kcal (2) G-P(sol) polarization free energy of solvation -78.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds