Wall clock time and date at job start Tue Mar 31 2020 13:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99830 * 2 1 4 4 C 1.50708 * 109.47133 * 180.02562 * 3 2 1 5 5 C 1.38278 * 119.97142 * 89.99503 * 4 3 2 6 6 C 1.38254 * 120.11027 * 180.02562 * 5 4 3 7 7 C 1.38163 * 120.05301 * 0.02562 * 6 5 4 8 8 C 1.38710 * 119.94384 * 0.22732 * 7 6 5 9 9 O 1.35906 * 120.05659 * 179.72661 * 8 7 6 10 10 C 1.42903 * 116.99917 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.46988 * 180.02562 * 10 9 8 12 12 C 1.53000 * 115.54701 * 294.87927 * 11 10 9 13 13 S 1.81391 * 109.47507 * 294.63540 * 12 11 10 14 14 C 1.81402 * 102.99954 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46782 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00476 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99859 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99621 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00277 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47083 * 60.00405 * 19 17 15 21 21 H 1.48500 * 109.47320 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47264 * 300.00285 * 19 17 15 23 23 C 1.52999 * 117.49787 * 149.21539 * 11 10 9 24 24 C 1.52997 * 117.49795 * 80.55554 * 11 10 9 25 25 C 1.38122 * 119.96667 * 269.97364 * 4 3 2 26 26 H 1.09000 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47535 * 300.00298 * 1 2 3 28 28 H 1.08995 * 109.47173 * 60.00609 * 1 2 3 29 29 H 1.08995 * 109.47718 * 59.99444 * 3 2 1 30 30 H 1.09000 * 109.47092 * 299.99516 * 3 2 1 31 31 H 1.08001 * 119.95166 * 0.02562 * 5 4 3 32 32 H 1.07995 * 119.96980 * 180.02562 * 6 5 4 33 33 H 1.08001 * 120.02728 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47026 * 300.00289 * 10 9 8 35 35 H 1.08999 * 109.46821 * 59.99965 * 10 9 8 36 36 H 1.08997 * 109.47091 * 54.64196 * 12 11 10 37 37 H 1.09009 * 109.46683 * 174.63239 * 12 11 10 38 38 H 1.08999 * 109.46899 * 299.99303 * 14 13 12 39 39 H 1.08994 * 109.47645 * 60.00069 * 14 13 12 40 40 H 0.97002 * 119.99385 * 179.97438 * 18 17 15 41 41 H 1.09006 * 117.49609 * 359.97438 * 23 11 10 42 42 H 1.09002 * 117.50266 * 145.01466 * 23 11 10 43 43 H 1.09003 * 117.49573 * 214.97305 * 24 11 10 44 44 H 1.08997 * 117.50418 * 359.97438 * 24 11 10 45 45 H 1.07999 * 120.02808 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2007 1.1321 -1.1988 6 6 5.5789 1.0225 -1.2027 7 6 6.2719 0.9664 -0.0088 8 6 5.5835 1.0156 1.1944 9 8 6.2625 0.9550 2.3701 10 6 7.6848 0.8407 2.2927 11 6 8.2696 0.7859 3.7054 12 6 8.0880 2.0525 4.5443 13 16 9.0245 3.4134 3.7953 14 6 8.6904 4.8024 4.9132 15 6 9.4107 6.0301 4.4181 16 1 10.0099 5.9797 3.5209 17 6 9.3048 7.2177 5.1105 18 7 8.5748 7.2792 6.2027 19 14 10.1981 8.7393 4.4973 20 1 9.7215 9.0765 3.1318 21 1 9.9246 9.8764 5.4124 22 1 11.6588 8.4746 4.4604 23 6 9.5571 -0.0159 3.9064 24 6 8.2270 -0.5576 4.4361 25 6 4.2008 1.1324 1.1956 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6885 1.8465 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.6608 1.1754 -2.1332 32 1 6.1140 0.9806 -2.1398 33 1 7.3485 0.8804 -0.0124 34 1 7.9473 -0.0708 1.7556 35 1 8.0904 1.7034 1.7643 36 1 7.0309 2.3156 4.5807 37 1 8.4529 1.8737 5.5558 38 1 7.6183 4.9970 4.9406 39 1 9.0405 4.5548 5.9152 40 1 8.5007 8.1146 6.6901 41 1 9.9872 -0.5048 3.0322 42 1 10.2745 0.3586 4.6366 43 1 8.0699 -0.5392 5.5146 44 1 7.7819 -1.4025 3.9105 45 1 3.6628 1.1749 2.1311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:56 Heat of formation + Delta-G solvation = -44.420289 kcal Electronic energy + Delta-G solvation = -23750.983298 eV Core-core repulsion = 20246.715527 eV Total energy + Delta-G solvation = -3504.267771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.27737 -38.73185 -37.79947 -36.65666 -33.12235 -32.01413 -30.42806 -28.73390 -28.41077 -27.59272 -26.91279 -25.44978 -23.02961 -22.67310 -22.37150 -21.39644 -19.20607 -17.96439 -16.68826 -16.63592 -16.35923 -16.12980 -15.90394 -15.64941 -15.43691 -15.12060 -14.75904 -14.41772 -14.11978 -14.00037 -13.26611 -13.07719 -12.81753 -12.71062 -12.48122 -12.42399 -12.37335 -11.93076 -11.80370 -11.65749 -11.50507 -11.33592 -11.12554 -10.85284 -10.79980 -10.69657 -10.32912 -10.24337 -9.99256 -9.65809 -9.40069 -9.01194 -8.78572 -8.59163 -8.19170 -6.62931 -6.17336 -4.21347 1.13791 1.41275 2.60217 3.08897 3.28905 3.31900 3.36247 3.41346 3.87494 3.95241 4.04310 4.36908 4.58182 4.64466 4.73846 4.75243 4.86108 4.90817 4.99762 5.01941 5.05950 5.09314 5.13608 5.19603 5.24292 5.28634 5.35929 5.46805 5.59240 5.64526 5.70821 5.83588 5.90195 5.92721 6.01522 6.14462 6.20904 6.25660 6.35423 6.45778 6.67617 6.83638 7.12784 7.14998 7.46161 7.76815 8.03949 8.80080 9.41292 10.94039 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010970 B = 0.002769 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.805605 B =10108.360950 C =11466.171229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.103 3.897 4 C -0.057 4.057 5 C -0.143 4.143 6 C -0.082 4.082 7 C -0.202 4.202 8 C 0.139 3.861 9 O -0.305 6.305 10 C 0.100 3.900 11 C -0.106 4.106 12 C -0.050 4.050 13 S -0.306 6.306 14 C 0.092 3.908 15 C -0.511 4.511 16 H 0.066 0.934 17 C 0.064 3.936 18 N -0.894 5.894 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.152 4.152 24 C -0.164 4.164 25 C -0.133 4.133 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.266 0.734 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.615 -16.914 -11.741 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.027 3.973 4 C -0.057 4.057 5 C -0.161 4.161 6 C -0.100 4.100 7 C -0.220 4.220 8 C 0.093 3.907 9 O -0.218 6.218 10 C 0.025 3.975 11 C -0.107 4.107 12 C -0.198 4.198 13 S -0.079 6.079 14 C -0.055 4.055 15 C -0.550 4.550 16 H 0.084 0.916 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.733 3.267 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.190 4.190 24 C -0.203 4.203 25 C -0.151 4.151 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.019 -16.949 -12.292 23.211 hybrid contribution -0.373 1.191 0.776 1.470 sum -10.393 -15.758 -11.516 22.112 Atomic orbital electron populations 1.22762 0.80984 1.02832 1.00070 1.87975 1.19590 1.27420 1.95428 1.21348 0.89658 0.85086 1.01197 1.19262 0.93742 0.99912 0.92758 1.20871 0.94238 1.03722 0.97267 1.20899 0.93992 0.97637 0.97481 1.21341 1.00539 1.07882 0.92277 1.18956 0.91646 0.95143 0.84985 1.86077 1.20650 1.87528 1.27587 1.22290 0.77946 1.01534 0.95698 1.20893 1.02464 0.92301 0.95002 1.22688 1.02918 0.94408 0.99782 1.86464 1.67314 1.08551 1.45527 1.21019 0.99869 0.90624 0.93951 1.20645 1.30455 0.92793 1.11131 0.91576 1.24969 0.95343 0.98854 0.94753 1.69953 1.39235 1.27257 1.16740 0.86420 0.80110 0.81433 0.78733 1.19917 1.21068 1.19915 1.23049 0.90619 1.01855 1.03438 1.23108 1.00726 0.95828 1.00670 1.20270 0.91170 1.05180 0.98505 0.89564 0.93912 0.94039 0.92077 0.92161 0.86040 0.85674 0.85301 0.92232 0.90070 0.90107 0.90776 0.94741 0.94762 0.92485 0.88584 0.87594 0.88413 0.88585 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.16 10.69 -35.23 -0.38 -4.54 16 3 C 0.10 1.02 6.06 36.01 0.22 1.24 16 4 C -0.06 -0.68 5.51 -104.65 -0.58 -1.25 16 5 C -0.14 -1.58 9.70 -39.56 -0.38 -1.96 16 6 C -0.08 -0.91 10.04 -39.60 -0.40 -1.31 16 7 C -0.20 -2.55 9.04 -39.43 -0.36 -2.90 16 8 C 0.14 1.98 6.69 -39.22 -0.26 1.72 16 9 O -0.31 -4.69 10.04 -19.44 -0.20 -4.88 16 10 C 0.10 1.40 4.45 37.16 0.17 1.56 16 11 C -0.11 -1.50 1.77 -154.51 -0.27 -1.78 16 12 C -0.05 -0.88 5.75 37.16 0.21 -0.66 16 13 S -0.31 -6.67 20.93 -107.50 -2.25 -8.92 16 14 C 0.09 2.44 5.70 36.01 0.21 2.65 16 15 C -0.51 -14.62 9.13 -34.44 -0.31 -14.93 16 16 H 0.07 1.89 7.71 -52.48 -0.40 1.48 16 17 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 18 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 19 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.15 -1.83 9.94 -26.69 -0.27 -2.10 16 24 C -0.16 -1.91 9.94 -26.69 -0.27 -2.17 16 25 C -0.13 -1.78 9.64 -39.43 -0.38 -2.16 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.13 1.46 6.30 -52.49 -0.33 1.13 16 34 H 0.06 0.69 7.61 -51.93 -0.40 0.30 16 35 H 0.08 1.24 7.05 -51.93 -0.37 0.87 16 36 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 37 H 0.07 1.26 8.09 -51.92 -0.42 0.84 16 38 H 0.03 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -31.59 392.42 -10.24 -41.83 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.39 Total: 0.64 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -1.66 Total: -21.00 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.57 Total: -9.42 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -6.67 SS G_CDS: -2.25 Total: -8.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.59 -10.24 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.595 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds