Wall clock time and date at job start Tue Mar 31 2020 13:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99830 * 2 1 4 4 C 1.50708 * 109.47133 * 180.02562 * 3 2 1 5 5 C 1.38278 * 119.97142 * 89.99503 * 4 3 2 6 6 C 1.38254 * 120.11027 * 180.02562 * 5 4 3 7 7 C 1.38163 * 120.05301 * 0.02562 * 6 5 4 8 8 C 1.38710 * 119.94384 * 0.22732 * 7 6 5 9 9 O 1.35906 * 120.05659 * 179.72661 * 8 7 6 10 10 C 1.42903 * 116.99917 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.46988 * 180.02562 * 10 9 8 12 12 C 1.53000 * 115.54701 * 294.87927 * 11 10 9 13 13 S 1.81391 * 109.47507 * 294.63540 * 12 11 10 14 14 C 1.81402 * 102.99954 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46782 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00476 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99859 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99621 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00277 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47083 * 60.00405 * 19 17 15 21 21 H 1.48500 * 109.47320 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47264 * 300.00285 * 19 17 15 23 23 C 1.52999 * 117.49787 * 149.21539 * 11 10 9 24 24 C 1.52997 * 117.49795 * 80.55554 * 11 10 9 25 25 C 1.38122 * 119.96667 * 269.97364 * 4 3 2 26 26 H 1.09000 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47535 * 300.00298 * 1 2 3 28 28 H 1.08995 * 109.47173 * 60.00609 * 1 2 3 29 29 H 1.08995 * 109.47718 * 59.99444 * 3 2 1 30 30 H 1.09000 * 109.47092 * 299.99516 * 3 2 1 31 31 H 1.08001 * 119.95166 * 0.02562 * 5 4 3 32 32 H 1.07995 * 119.96980 * 180.02562 * 6 5 4 33 33 H 1.08001 * 120.02728 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47026 * 300.00289 * 10 9 8 35 35 H 1.08999 * 109.46821 * 59.99965 * 10 9 8 36 36 H 1.08997 * 109.47091 * 54.64196 * 12 11 10 37 37 H 1.09009 * 109.46683 * 174.63239 * 12 11 10 38 38 H 1.08999 * 109.46899 * 299.99303 * 14 13 12 39 39 H 1.08994 * 109.47645 * 60.00069 * 14 13 12 40 40 H 0.97002 * 119.99385 * 179.97438 * 18 17 15 41 41 H 1.09006 * 117.49609 * 359.97438 * 23 11 10 42 42 H 1.09002 * 117.50266 * 145.01466 * 23 11 10 43 43 H 1.09003 * 117.49573 * 214.97305 * 24 11 10 44 44 H 1.08997 * 117.50418 * 359.97438 * 24 11 10 45 45 H 1.07999 * 120.02808 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2007 1.1321 -1.1988 6 6 5.5789 1.0225 -1.2027 7 6 6.2719 0.9664 -0.0088 8 6 5.5835 1.0156 1.1944 9 8 6.2625 0.9550 2.3701 10 6 7.6848 0.8407 2.2927 11 6 8.2696 0.7859 3.7054 12 6 8.0880 2.0525 4.5443 13 16 9.0245 3.4134 3.7953 14 6 8.6904 4.8024 4.9132 15 6 9.4107 6.0301 4.4181 16 1 10.0099 5.9797 3.5209 17 6 9.3048 7.2177 5.1105 18 7 8.5748 7.2792 6.2027 19 14 10.1981 8.7393 4.4973 20 1 9.7215 9.0765 3.1318 21 1 9.9246 9.8764 5.4124 22 1 11.6588 8.4746 4.4604 23 6 9.5571 -0.0159 3.9064 24 6 8.2270 -0.5576 4.4361 25 6 4.2008 1.1324 1.1956 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6885 1.8465 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.6608 1.1754 -2.1332 32 1 6.1140 0.9806 -2.1398 33 1 7.3485 0.8804 -0.0124 34 1 7.9473 -0.0708 1.7556 35 1 8.0904 1.7034 1.7643 36 1 7.0309 2.3156 4.5807 37 1 8.4529 1.8737 5.5558 38 1 7.6183 4.9970 4.9406 39 1 9.0405 4.5548 5.9152 40 1 8.5007 8.1146 6.6901 41 1 9.9872 -0.5048 3.0322 42 1 10.2745 0.3586 4.6366 43 1 8.0699 -0.5392 5.5146 44 1 7.7819 -1.4025 3.9105 45 1 3.6628 1.1749 2.1311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:55 Heat of formation + Delta-G solvation = -60.743029 kcal Electronic energy + Delta-G solvation = -23751.691106 eV Core-core repulsion = 20246.715527 eV Total energy + Delta-G solvation = -3504.975578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.25883 -39.66135 -38.66716 -37.61276 -35.31183 -32.86897 -31.37539 -30.73438 -29.87045 -28.41654 -27.89901 -26.19643 -25.19016 -23.60497 -23.30150 -22.33457 -20.34773 -18.92881 -18.64861 -17.54625 -17.36466 -17.13349 -16.99708 -16.86476 -16.50648 -16.24353 -16.21103 -15.69696 -15.26181 -14.88585 -14.73877 -14.55860 -14.34454 -14.18361 -13.72181 -13.59035 -13.54656 -13.10332 -12.84729 -12.72576 -12.53071 -12.49599 -12.41036 -12.26561 -12.23080 -11.95054 -11.75172 -11.60042 -11.28624 -10.98080 -10.76216 -10.67304 -10.49074 -9.92913 -9.17338 -8.44448 -8.35087 -6.48929 0.22422 0.47170 0.96354 1.38131 1.41736 1.50602 2.00467 2.07592 2.35140 2.58586 2.97206 2.99126 3.17916 3.54273 3.62740 3.71618 3.85231 3.89372 4.00095 4.07887 4.19294 4.28550 4.35332 4.38794 4.40883 4.53891 4.55588 4.58754 4.62241 4.68927 4.75542 4.78680 4.86829 4.90612 4.91323 4.95218 5.00825 5.03558 5.23146 5.32081 5.44426 5.54445 5.56244 5.79536 5.86227 6.17920 6.45090 6.58426 7.19108 8.77062 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010970 B = 0.002769 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.805605 B =10108.360950 C =11466.171229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.103 3.897 4 C -0.064 4.064 5 C -0.143 4.143 6 C -0.082 4.082 7 C -0.211 4.211 8 C 0.113 3.887 9 O -0.326 6.326 10 C 0.104 3.896 11 C -0.133 4.133 12 C -0.037 4.037 13 S -0.299 6.299 14 C 0.091 3.909 15 C -0.536 4.536 16 H 0.063 0.937 17 C 0.012 3.988 18 N -0.927 5.927 19 Si 0.978 3.022 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.154 4.154 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.138 0.862 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.006 0.994 39 H 0.012 0.988 40 H 0.271 0.729 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.115 0.885 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 -17.860 -13.702 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.027 3.973 4 C -0.064 4.064 5 C -0.162 4.162 6 C -0.100 4.100 7 C -0.230 4.230 8 C 0.067 3.933 9 O -0.240 6.240 10 C 0.030 3.970 11 C -0.134 4.134 12 C -0.185 4.185 13 S -0.071 6.071 14 C -0.057 4.057 15 C -0.574 4.574 16 H 0.081 0.919 17 C -0.188 4.188 18 N -0.566 5.566 19 Si 0.801 3.199 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.189 1.189 23 C -0.178 4.178 24 C -0.182 4.182 25 C -0.173 4.173 26 H 0.115 0.885 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.156 0.844 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.024 0.976 39 H 0.031 0.969 40 H 0.079 0.921 41 H 0.137 0.863 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.133 0.867 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.749 -17.901 -14.259 24.876 hybrid contribution -0.562 1.372 1.377 2.023 sum -10.311 -16.530 -12.882 23.356 Atomic orbital electron populations 1.22959 0.79211 1.03921 1.01102 1.87925 1.21600 1.27877 1.95646 1.21396 0.88407 0.85137 1.02322 1.19592 0.95067 0.99212 0.92570 1.21246 0.94507 1.02478 0.97927 1.21287 0.94287 0.96334 0.98067 1.21551 1.01161 1.08007 0.92292 1.19226 0.92066 0.96651 0.85310 1.86041 1.21301 1.88071 1.28611 1.22267 0.77424 1.01889 0.95450 1.20884 1.05464 0.91751 0.95334 1.22709 1.01017 0.94235 1.00506 1.86201 1.68104 1.08242 1.44574 1.20712 0.97753 0.92960 0.94229 1.20965 1.31012 0.94103 1.11363 0.91868 1.25971 0.95894 1.02265 0.94706 1.70070 1.40278 1.28388 1.17848 0.85307 0.79055 0.77130 0.78444 1.19102 1.20042 1.18852 1.23166 0.90058 1.00474 1.04103 1.23203 0.99951 0.94086 1.00926 1.20436 0.91299 1.06421 0.99151 0.88532 0.93348 0.92517 0.91883 0.90085 0.83473 0.82791 0.84389 0.89554 0.92047 0.91676 0.90330 0.97580 0.96943 0.92064 0.86258 0.88082 0.87921 0.86702 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -8.46 10.69 -148.98 -1.59 -10.06 16 3 C 0.10 1.94 6.06 71.24 0.43 2.37 16 4 C -0.06 -1.50 5.51 -19.88 -0.11 -1.61 16 5 C -0.14 -2.91 9.70 22.28 0.22 -2.70 16 6 C -0.08 -1.67 10.04 22.26 0.22 -1.45 16 7 C -0.21 -5.19 9.04 22.36 0.20 -4.99 16 8 C 0.11 3.27 6.69 22.51 0.15 3.42 16 9 O -0.33 -10.22 10.04 -92.49 -0.93 -11.15 16 10 C 0.10 2.85 4.45 71.98 0.32 3.17 16 11 C -0.13 -3.68 1.77 -52.18 -0.09 -3.77 16 12 C -0.04 -1.31 5.75 71.98 0.41 -0.90 16 13 S -0.30 -13.41 20.93 -56.49 -1.18 -14.60 16 14 C 0.09 5.06 5.70 71.24 0.41 5.47 16 15 C -0.54 -31.53 9.13 25.60 0.23 -31.29 16 16 H 0.06 3.67 7.71 -2.91 -0.02 3.65 16 17 C 0.01 0.70 5.46 84.65 0.46 1.17 16 18 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 19 Si 0.98 44.43 29.54 68.60 2.03 46.46 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 23 C -0.14 -3.07 9.94 30.62 0.30 -2.76 16 24 C -0.14 -2.99 9.94 30.62 0.30 -2.69 16 25 C -0.15 -4.27 9.64 22.37 0.22 -4.06 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 1.12 8.08 -2.39 -0.02 1.10 16 30 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 31 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.14 3.00 6.30 -2.91 -0.02 2.98 16 34 H 0.09 1.85 7.61 -2.39 -0.02 1.83 16 35 H 0.06 1.88 7.05 -2.39 -0.02 1.87 16 36 H 0.06 2.52 8.11 -2.39 -0.02 2.50 16 37 H 0.08 2.72 8.09 -2.39 -0.02 2.70 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 41 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.10 2.33 8.14 -2.39 -0.02 2.32 16 43 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -70.36 392.42 4.49 -65.87 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.95 Total: 18.24 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 4.93 Total: -39.07 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.28 Total: -55.70 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -2.52 Total: -21.20 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -13.41 SS G_CDS: -1.18 Total: -14.60 kcal Total: -70.36 4.49 -65.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.131 kcal (2) G-P(sol) polarization free energy of solvation -70.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds