Wall clock time and date at job start Tue Mar 31 2020 13:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00146 * 2 1 4 4 H 1.48503 * 109.47072 * 239.99952 * 3 2 1 5 5 H 1.48500 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47465 * 120.00292 * 3 2 1 7 7 C 1.37876 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00527 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47575 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47145 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46635 * 304.99084 * 11 10 9 13 13 N 1.46890 * 109.47218 * 64.99985 * 11 10 9 14 14 C 1.50702 * 109.47040 * 184.99796 * 11 10 9 15 15 O 1.21275 * 120.00245 * 259.99931 * 14 11 10 16 16 N 1.34787 * 119.99991 * 79.99776 * 14 11 10 17 17 C 1.46501 * 119.99658 * 180.02562 * 16 14 11 18 18 H 1.09000 * 109.40587 * 324.89313 * 17 16 14 19 19 C 1.53071 * 109.43053 * 204.99710 * 17 16 14 20 20 C 1.53417 * 108.28579 * 191.65984 * 19 17 16 21 21 O 1.42825 * 108.38611 * 64.71503 * 20 19 17 22 22 C 1.35901 * 117.86860 * 310.87478 * 21 20 19 23 23 C 1.39129 * 118.47356 * 197.12742 * 22 21 20 24 24 C 1.37964 * 120.25224 * 180.21661 * 23 22 21 25 25 C 1.38481 * 119.93594 * 0.02562 * 24 23 22 26 26 F 1.35104 * 120.03843 * 179.97438 * 25 24 23 27 27 C 1.38288 * 119.92440 * 359.90942 * 25 24 23 28 28 C 1.38356 * 121.79556 * 17.19560 * 22 21 20 29 29 H 0.97008 * 120.00096 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47095 * 59.99302 * 9 7 2 31 31 H 1.09010 * 109.46608 * 300.00318 * 9 7 2 32 32 H 1.08998 * 109.47145 * 59.99521 * 10 9 7 33 33 H 1.08998 * 109.46956 * 299.99716 * 10 9 7 34 34 H 1.00901 * 110.99795 * 296.04198 * 13 11 10 35 35 H 1.00890 * 111.00730 * 60.00123 * 13 11 10 36 36 H 0.97001 * 119.99736 * 359.97438 * 16 14 11 37 37 H 1.09008 * 109.70188 * 71.97038 * 19 17 16 38 38 H 1.08997 * 109.70840 * 311.36559 * 19 17 16 39 39 H 1.08998 * 109.67842 * 184.43310 * 20 19 17 40 40 H 1.08997 * 109.68186 * 304.98845 * 20 19 17 41 41 H 1.07998 * 119.86869 * 0.20356 * 23 22 21 42 42 H 1.08006 * 120.03544 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.85340 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0033 12 1 0.7871 -5.0076 0.8379 13 7 0.7297 -5.1176 -1.2593 14 6 2.4545 -6.1300 0.1207 15 8 2.7874 -6.7528 -0.8652 16 7 2.9562 -6.4600 1.3275 17 6 3.9039 -7.5706 1.4479 18 1 3.6412 -8.3500 0.7326 19 6 3.8431 -8.1403 2.8673 20 6 5.0325 -9.0908 3.0559 21 8 6.2367 -8.3272 2.9736 22 6 6.3791 -7.4766 1.9233 23 6 7.6522 -7.0045 1.6200 24 6 7.8382 -6.1359 0.5644 25 6 6.7543 -5.7312 -0.1967 26 9 6.9340 -4.8803 -1.2306 27 6 5.4881 -6.2001 0.1019 28 6 5.2980 -7.0740 1.1596 29 1 -0.4851 0.8401 0.0004 30 1 0.6245 -2.5563 -0.8919 31 1 0.6239 -2.5574 0.8881 32 1 2.8711 -3.6047 0.8890 33 1 2.8724 -3.6040 -0.8909 34 1 0.0250 -4.3995 -1.3358 35 1 1.3503 -5.1013 -2.0547 36 1 2.6902 -5.9615 2.1160 37 1 2.9103 -8.6876 3.0040 38 1 3.9029 -7.3284 3.5921 39 1 4.9679 -9.5702 4.0326 40 1 5.0243 -9.8489 2.2729 41 1 8.4980 -7.3191 2.2133 42 1 8.8281 -5.7720 0.3317 43 1 4.6436 -5.8833 -0.4921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424119615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:53 Heat of formation + Delta-G solvation = -104.782940 kcal Electronic energy + Delta-G solvation = -27548.153014 eV Core-core repulsion = 23507.347297 eV Total energy + Delta-G solvation = -4040.805717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.76632 -41.22481 -39.57939 -37.49075 -36.06781 -35.28691 -32.88283 -32.16975 -30.91426 -30.02410 -29.88644 -26.95998 -25.37520 -24.06700 -23.71643 -22.66042 -20.80977 -20.55439 -19.89354 -18.10229 -17.73049 -17.25731 -17.18084 -16.38961 -16.17713 -15.59835 -15.37464 -15.20194 -14.86995 -14.69673 -14.45801 -14.36750 -14.13022 -13.67245 -13.51583 -13.27193 -13.15637 -13.06826 -12.90947 -12.21888 -12.14879 -11.91670 -11.70286 -11.45786 -11.15027 -11.09318 -10.92217 -10.85828 -10.71826 -10.02098 -9.98056 -9.37131 -9.28684 -9.23205 -9.09678 -8.44770 -8.25845 -8.22158 -6.09418 -4.12502 0.94004 1.09124 2.75047 2.88105 3.08347 3.28819 3.33354 3.36467 3.47379 4.07426 4.25158 4.35488 4.39212 4.41119 4.62111 4.70172 4.92440 4.94869 5.06496 5.12621 5.14249 5.19841 5.26872 5.29132 5.51193 5.52537 5.61212 5.68956 5.71588 5.96280 6.03927 6.11883 6.24034 6.36574 6.47217 6.56967 6.83862 7.12221 7.33712 7.48678 7.55218 7.61276 7.84882 7.87670 8.28563 8.31416 8.93114 9.52612 11.01438 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.003604 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.228661 B = 7767.220242 C = 8736.018742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.138 4.138 11 C 0.075 3.925 12 H 0.098 0.902 13 N -0.830 5.830 14 C 0.526 3.474 15 O -0.532 6.532 16 N -0.726 5.726 17 C 0.191 3.809 18 H 0.104 0.896 19 C -0.167 4.167 20 C 0.066 3.934 21 O -0.313 6.313 22 C 0.126 3.874 23 C -0.127 4.127 24 C -0.117 4.117 25 C 0.066 3.934 26 F -0.138 7.138 27 C -0.100 4.100 28 C -0.148 4.148 29 H 0.262 0.738 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.355 0.645 35 H 0.346 0.654 36 H 0.405 0.595 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.606 -18.654 7.230 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.178 4.178 11 C -0.040 4.040 12 H 0.116 0.884 13 N -0.362 5.362 14 C 0.314 3.686 15 O -0.408 6.408 16 N -0.379 5.379 17 C 0.086 3.914 18 H 0.121 0.879 19 C -0.205 4.205 20 C -0.009 4.009 21 O -0.228 6.228 22 C 0.081 3.919 23 C -0.145 4.145 24 C -0.136 4.136 25 C 0.046 3.954 26 F -0.116 7.116 27 C -0.119 4.119 28 C -0.150 4.150 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.240 0.760 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.087 0.913 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.552 -19.705 6.889 23.390 hybrid contribution 0.558 2.429 -0.106 2.495 sum 11.110 -17.275 6.783 21.630 Atomic orbital electron populations 1.69936 1.06014 1.26909 1.50379 1.24994 0.94858 0.99276 0.95066 0.86651 0.79615 0.83007 0.78735 1.20175 1.21189 1.20202 1.21138 0.93006 0.90874 1.51249 0.92765 1.19087 0.93645 0.91061 0.97350 1.22400 0.99922 0.93937 1.01550 1.21487 0.94668 0.92088 0.95794 0.88423 1.58747 1.18455 1.55943 1.03098 1.21021 0.80764 0.84374 0.82424 1.90650 1.60137 1.53066 1.36928 1.46072 1.46246 1.34984 1.10606 1.19595 0.84711 0.89674 0.97400 0.87864 1.22527 1.00454 1.01100 0.96445 1.22966 0.81693 0.92439 1.03846 1.86005 1.40673 1.53118 1.42959 1.18652 0.93040 0.92272 0.87972 1.20354 0.95113 1.00378 0.98675 1.20947 0.98712 0.98537 0.95430 1.17575 0.94321 0.94597 0.88869 1.91520 1.96036 1.68149 1.55926 1.21312 0.96948 0.96476 0.97115 1.20042 0.95227 1.01675 0.98069 0.92819 0.96375 0.96336 0.92523 0.92652 0.82916 0.84100 0.75992 0.88619 0.89410 0.86777 0.91297 0.84223 0.84133 0.83453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.62 4.74 -27.89 -0.13 0.48 16 10 C -0.14 -2.67 4.78 -26.73 -0.13 -2.80 16 11 C 0.07 1.22 3.21 -68.87 -0.22 1.00 16 12 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 13 N -0.83 -13.86 8.94 -5.66 -0.05 -13.91 16 14 C 0.53 8.11 5.64 -10.98 -0.06 8.05 16 15 O -0.53 -9.61 14.16 5.56 0.08 -9.53 16 16 N -0.73 -8.71 4.86 -54.86 -0.27 -8.97 16 17 C 0.19 2.08 2.70 -69.01 -0.19 1.89 16 18 H 0.10 1.22 7.58 -51.93 -0.39 0.83 16 19 C -0.17 -1.20 5.67 -26.48 -0.15 -1.35 16 20 C 0.07 0.44 7.03 37.37 0.26 0.70 16 21 O -0.31 -3.08 10.27 -19.43 -0.20 -3.28 16 22 C 0.13 1.44 6.47 -39.21 -0.25 1.19 16 23 C -0.13 -1.34 9.93 -39.35 -0.39 -1.73 16 24 C -0.12 -1.35 10.02 -39.59 -0.40 -1.74 16 25 C 0.07 0.95 7.30 -39.47 -0.29 0.66 16 26 F -0.14 -2.21 17.27 2.25 0.04 -2.17 16 27 C -0.10 -1.49 9.05 -39.46 -0.36 -1.84 16 28 C -0.15 -1.86 5.56 -104.44 -0.58 -2.44 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 31 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.36 5.99 7.55 -39.29 -0.30 5.69 16 35 H 0.35 5.90 8.58 -39.30 -0.34 5.56 16 36 H 0.40 4.09 8.58 -40.82 -0.35 3.74 16 37 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 39 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 43 H 0.15 2.52 4.68 -52.49 -0.25 2.27 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -32.23 357.41 -8.34 -40.57 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.75 Total: 11.84 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.29 Total: -11.09 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.42 Total: -48.13 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.12 Total: -12.81 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.23 -8.34 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.216 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds