Wall clock time and date at job start Tue Mar 31 2020 13:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00146 * 2 1 4 4 H 1.48503 * 109.47072 * 239.99952 * 3 2 1 5 5 H 1.48500 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47465 * 120.00292 * 3 2 1 7 7 C 1.37876 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00527 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47575 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47145 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46635 * 304.99084 * 11 10 9 13 13 N 1.46890 * 109.47218 * 64.99985 * 11 10 9 14 14 C 1.50702 * 109.47040 * 184.99796 * 11 10 9 15 15 O 1.21275 * 120.00245 * 259.99931 * 14 11 10 16 16 N 1.34787 * 119.99991 * 79.99776 * 14 11 10 17 17 C 1.46501 * 119.99658 * 180.02562 * 16 14 11 18 18 H 1.09000 * 109.40587 * 324.89313 * 17 16 14 19 19 C 1.53071 * 109.43053 * 204.99710 * 17 16 14 20 20 C 1.53417 * 108.28579 * 191.65984 * 19 17 16 21 21 O 1.42825 * 108.38611 * 64.71503 * 20 19 17 22 22 C 1.35901 * 117.86860 * 310.87478 * 21 20 19 23 23 C 1.39129 * 118.47356 * 197.12742 * 22 21 20 24 24 C 1.37964 * 120.25224 * 180.21661 * 23 22 21 25 25 C 1.38481 * 119.93594 * 0.02562 * 24 23 22 26 26 F 1.35104 * 120.03843 * 179.97438 * 25 24 23 27 27 C 1.38288 * 119.92440 * 359.90942 * 25 24 23 28 28 C 1.38356 * 121.79556 * 17.19560 * 22 21 20 29 29 H 0.97008 * 120.00096 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47095 * 59.99302 * 9 7 2 31 31 H 1.09010 * 109.46608 * 300.00318 * 9 7 2 32 32 H 1.08998 * 109.47145 * 59.99521 * 10 9 7 33 33 H 1.08998 * 109.46956 * 299.99716 * 10 9 7 34 34 H 1.00901 * 110.99795 * 296.04198 * 13 11 10 35 35 H 1.00890 * 111.00730 * 60.00123 * 13 11 10 36 36 H 0.97001 * 119.99736 * 359.97438 * 16 14 11 37 37 H 1.09008 * 109.70188 * 71.97038 * 19 17 16 38 38 H 1.08997 * 109.70840 * 311.36559 * 19 17 16 39 39 H 1.08998 * 109.67842 * 184.43310 * 20 19 17 40 40 H 1.08997 * 109.68186 * 304.98845 * 20 19 17 41 41 H 1.07998 * 119.86869 * 0.20356 * 23 22 21 42 42 H 1.08006 * 120.03544 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.85340 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0033 12 1 0.7871 -5.0076 0.8379 13 7 0.7297 -5.1176 -1.2593 14 6 2.4545 -6.1300 0.1207 15 8 2.7874 -6.7528 -0.8652 16 7 2.9562 -6.4600 1.3275 17 6 3.9039 -7.5706 1.4479 18 1 3.6412 -8.3500 0.7326 19 6 3.8431 -8.1403 2.8673 20 6 5.0325 -9.0908 3.0559 21 8 6.2367 -8.3272 2.9736 22 6 6.3791 -7.4766 1.9233 23 6 7.6522 -7.0045 1.6200 24 6 7.8382 -6.1359 0.5644 25 6 6.7543 -5.7312 -0.1967 26 9 6.9340 -4.8803 -1.2306 27 6 5.4881 -6.2001 0.1019 28 6 5.2980 -7.0740 1.1596 29 1 -0.4851 0.8401 0.0004 30 1 0.6245 -2.5563 -0.8919 31 1 0.6239 -2.5574 0.8881 32 1 2.8711 -3.6047 0.8890 33 1 2.8724 -3.6040 -0.8909 34 1 0.0250 -4.3995 -1.3358 35 1 1.3503 -5.1013 -2.0547 36 1 2.6902 -5.9615 2.1160 37 1 2.9103 -8.6876 3.0040 38 1 3.9029 -7.3284 3.5921 39 1 4.9679 -9.5702 4.0326 40 1 5.0243 -9.8489 2.2729 41 1 8.4980 -7.3191 2.2133 42 1 8.8281 -5.7720 0.3317 43 1 4.6436 -5.8833 -0.4921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424119615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:52 Heat of formation + Delta-G solvation = -127.595608 kcal Electronic energy + Delta-G solvation = -27549.142246 eV Core-core repulsion = 23507.347297 eV Total energy + Delta-G solvation = -4041.794948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.90792 -42.12071 -40.72391 -38.33805 -37.34738 -36.56571 -34.86879 -33.10891 -31.76962 -31.68285 -30.91409 -28.40977 -26.64739 -25.23397 -24.80403 -23.70561 -22.41449 -21.46803 -21.12057 -19.08735 -18.86756 -18.47489 -18.11113 -18.06753 -17.32617 -16.67970 -16.57977 -16.30991 -16.17318 -16.02071 -15.72396 -15.56070 -15.28533 -14.90142 -14.70374 -14.43532 -14.25670 -14.11334 -13.96143 -13.91215 -13.47660 -13.02539 -12.92218 -12.71697 -12.67963 -12.54637 -12.33305 -11.85071 -11.80096 -11.75843 -11.66848 -11.34821 -10.80850 -10.58092 -10.31351 -10.06948 -9.69010 -9.15385 -8.23891 -6.34081 0.01728 0.11613 1.37394 1.38912 1.46720 1.51166 1.94972 2.27381 2.37812 2.52393 3.09699 3.17755 3.45633 3.51346 3.64572 3.70889 3.74223 3.91366 4.03898 4.08346 4.14749 4.20886 4.28747 4.39161 4.49445 4.60827 4.65016 4.78813 4.80038 4.87053 4.96714 5.03809 5.07719 5.10090 5.17280 5.37572 5.42996 5.61971 5.62485 5.77658 6.02298 6.18891 6.33344 6.42479 6.44339 6.80413 7.13956 7.34949 8.86593 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.003604 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.228661 B = 7767.220242 C = 8736.018742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.032 3.968 10 C -0.120 4.120 11 C 0.081 3.919 12 H 0.114 0.886 13 N -0.828 5.828 14 C 0.530 3.470 15 O -0.561 6.561 16 N -0.711 5.711 17 C 0.188 3.812 18 H 0.092 0.908 19 C -0.158 4.158 20 C 0.060 3.940 21 O -0.315 6.315 22 C 0.132 3.868 23 C -0.122 4.122 24 C -0.109 4.109 25 C 0.032 3.968 26 F -0.156 7.156 27 C -0.124 4.124 28 C -0.157 4.157 29 H 0.265 0.735 30 H 0.003 0.997 31 H 0.005 0.995 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.353 0.647 35 H 0.343 0.657 36 H 0.416 0.584 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.149 0.851 40 H 0.076 0.924 41 H 0.171 0.829 42 H 0.166 0.834 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.946 -19.884 9.569 25.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.068 0.932 9 C -0.005 4.005 10 C -0.160 4.160 11 C -0.034 4.034 12 H 0.132 0.868 13 N -0.359 5.359 14 C 0.317 3.683 15 O -0.440 6.440 16 N -0.363 5.363 17 C 0.084 3.916 18 H 0.110 0.890 19 C -0.196 4.196 20 C -0.015 4.015 21 O -0.229 6.229 22 C 0.086 3.914 23 C -0.140 4.140 24 C -0.128 4.128 25 C 0.013 3.987 26 F -0.135 7.135 27 C -0.143 4.143 28 C -0.159 4.159 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.168 0.832 35 H 0.155 0.845 36 H 0.253 0.747 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.167 0.833 40 H 0.094 0.906 41 H 0.189 0.811 42 H 0.183 0.817 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.897 -20.952 9.269 25.816 hybrid contribution 0.146 2.733 -0.785 2.847 sum 12.043 -18.220 8.484 23.430 Atomic orbital electron populations 1.70040 1.07360 1.27865 1.51133 1.25807 0.95721 1.02777 0.94654 0.85650 0.78478 0.78881 0.78970 1.19862 1.20466 1.19273 1.21562 0.93159 0.92624 1.51189 0.93191 1.18947 0.93924 0.91778 0.95861 1.22119 0.98754 0.94154 1.00949 1.21426 0.94833 0.90990 0.96200 0.86819 1.58772 1.18308 1.55602 1.03221 1.20727 0.80554 0.83950 0.83099 1.90640 1.61065 1.54094 1.38151 1.45935 1.45532 1.35097 1.09778 1.19792 0.83413 0.88666 0.99756 0.89023 1.22542 1.02068 1.01480 0.93487 1.23327 0.80045 0.91974 1.06116 1.86019 1.42274 1.52757 1.41845 1.18779 0.92895 0.92001 0.87725 1.20749 0.95873 0.99195 0.98170 1.21218 0.98834 0.97926 0.94786 1.17943 0.95368 0.95716 0.89642 1.91460 1.96155 1.68950 1.56962 1.21229 0.96440 0.98347 0.98270 1.20168 0.96581 1.01451 0.97682 0.92639 0.97834 0.97665 0.91993 0.94341 0.83178 0.84463 0.74720 0.86232 0.88923 0.83328 0.90555 0.81141 0.81665 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.34 13.29 21.45 0.28 -54.05 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -30.59 9.11 25.60 0.23 -30.36 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 9 C 0.03 1.58 4.74 29.84 0.14 1.73 16 10 C -0.12 -4.76 4.78 30.59 0.15 -4.61 16 11 C 0.08 2.66 3.21 44.17 0.14 2.81 16 12 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 13 N -0.83 -28.33 8.94 -171.81 -1.54 -29.86 16 14 C 0.53 16.50 5.64 87.66 0.49 16.99 16 15 O -0.56 -20.90 14.16 -3.01 -0.04 -20.95 16 16 N -0.71 -16.55 4.86 -445.87 -2.17 -18.72 16 17 C 0.19 3.86 2.70 44.29 0.12 3.98 16 18 H 0.09 2.12 7.58 -2.39 -0.02 2.10 16 19 C -0.16 -1.77 5.67 30.76 0.17 -1.60 16 20 C 0.06 0.57 7.03 72.12 0.51 1.08 16 21 O -0.31 -5.11 10.27 -92.44 -0.95 -6.06 16 22 C 0.13 2.73 6.47 22.51 0.15 2.88 16 23 C -0.12 -2.27 9.93 22.42 0.22 -2.05 16 24 C -0.11 -2.36 10.02 22.26 0.22 -2.14 16 25 C 0.03 0.96 7.30 22.34 0.16 1.13 16 26 F -0.16 -5.29 17.27 44.97 0.78 -4.51 16 27 C -0.12 -3.82 9.05 22.35 0.20 -3.62 16 28 C -0.16 -3.83 5.56 -19.75 -0.11 -3.94 16 29 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 30 H 0.00 0.18 6.87 -2.39 -0.02 0.16 16 31 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.35 12.27 7.55 -89.69 -0.68 11.59 16 35 H 0.34 12.18 8.58 -89.70 -0.77 11.41 16 36 H 0.42 7.81 8.58 -92.71 -0.80 7.02 16 37 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.09 1.01 8.11 -2.39 -0.02 0.99 16 39 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 42 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 43 H 0.12 4.34 4.68 -2.91 -0.01 4.33 16 Total: -1.00 -71.55 357.41 0.49 -71.05 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -1.16 Total: 33.81 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 3.27 Total: -16.75 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -3.42 Total: -102.64 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.99 Total: -27.01 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.78 Total: -4.51 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.55 0.49 -71.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.544 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds