Wall clock time and date at job start Tue Mar 31 2020 13:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48498 * 109.47471 * 269.99959 * 3 2 1 5 5 H 1.48504 * 109.47232 * 30.00331 * 3 2 1 6 6 H 1.48501 * 109.46984 * 150.00214 * 3 2 1 7 7 C 1.37880 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99546 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00052 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47118 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47216 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.46786 * 304.99769 * 11 10 9 13 13 N 1.46896 * 109.47403 * 64.99595 * 11 10 9 14 14 C 1.50700 * 109.47164 * 185.00058 * 11 10 9 15 15 O 1.21279 * 120.00113 * 259.99858 * 14 11 10 16 16 N 1.34784 * 119.99961 * 79.99626 * 14 11 10 17 17 C 1.46494 * 119.99635 * 180.02562 * 16 14 11 18 18 H 1.08999 * 109.43859 * 35.00058 * 17 16 14 19 19 C 1.53075 * 109.43235 * 154.91265 * 17 16 14 20 20 C 1.53389 * 108.30694 * 168.31540 * 19 17 16 21 21 O 1.42823 * 108.33330 * 295.21484 * 20 19 17 22 22 C 1.35899 * 117.85633 * 49.22607 * 21 20 19 23 23 C 1.39124 * 118.46715 * 163.02409 * 22 21 20 24 24 C 1.37972 * 120.25142 * 179.59795 * 23 22 21 25 25 C 1.38478 * 119.93022 * 0.02562 * 24 23 22 26 26 F 1.35101 * 120.03846 * 180.02562 * 25 24 23 27 27 C 1.38299 * 119.92975 * 0.05766 * 25 24 23 28 28 C 1.38358 * 121.79151 * 342.74082 * 22 21 20 29 29 H 0.96995 * 120.00141 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47405 * 60.00167 * 9 7 2 31 31 H 1.08998 * 109.47422 * 299.99957 * 9 7 2 32 32 H 1.08996 * 109.46899 * 60.00345 * 10 9 7 33 33 H 1.08998 * 109.46940 * 300.00253 * 10 9 7 34 34 H 1.00903 * 110.99667 * 60.00651 * 13 11 10 35 35 H 1.00904 * 110.99976 * 183.95134 * 13 11 10 36 36 H 0.96995 * 120.00015 * 359.72695 * 16 14 11 37 37 H 1.08997 * 109.69345 * 287.97285 * 19 17 16 38 38 H 1.08997 * 109.69753 * 48.57353 * 19 17 16 39 39 H 1.09007 * 109.68429 * 175.51907 * 20 19 17 40 40 H 1.08997 * 109.71703 * 54.93738 * 20 19 17 41 41 H 1.07996 * 119.87635 * 359.60293 * 23 22 21 42 42 H 1.08003 * 120.03675 * 179.97438 * 24 23 22 43 43 H 1.07996 * 119.84606 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0009 12 1 5.9149 -2.0471 -0.8429 13 7 6.0413 -2.0510 1.2542 14 6 6.0540 -4.0519 -0.1247 15 8 6.4281 -4.6509 0.8613 16 7 6.0875 -4.6520 -1.3310 17 6 6.5754 -6.0281 -1.4511 18 1 6.2864 -6.5941 -0.5656 19 6 5.9628 -6.6790 -2.6939 20 6 6.7025 -7.9956 -2.9624 21 8 8.0589 -7.6903 -3.2893 22 6 8.7344 -6.8429 -2.4692 23 6 10.1230 -6.8095 -2.5487 24 6 10.8452 -5.9570 -1.7392 25 6 10.1867 -5.1315 -0.8434 26 9 10.8917 -4.2955 -0.0501 27 6 8.8065 -5.1641 -0.7613 28 6 8.0782 -6.0189 -1.5722 29 1 -0.4850 0.8400 -0.0004 30 1 3.8753 -0.6804 0.8888 31 1 3.8746 -0.6800 -0.8911 32 1 3.6580 -3.1505 -0.8907 33 1 3.6586 -3.1501 0.8892 34 1 5.7178 -2.5799 2.0502 35 1 7.0478 -1.9805 1.2518 36 1 5.7846 -4.1743 -2.1190 37 1 4.9060 -6.8810 -2.5196 38 1 6.0739 -6.0134 -3.5498 39 1 6.2325 -8.5175 -3.7961 40 1 6.6718 -8.6230 -2.0716 41 1 10.6376 -7.4532 -3.2467 42 1 11.9231 -5.9342 -1.8035 43 1 8.2943 -4.5200 -0.0619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424119620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:56 Heat of formation + Delta-G solvation = -101.424982 kcal Electronic energy + Delta-G solvation = -27230.421593 eV Core-core repulsion = 23189.761488 eV Total energy + Delta-G solvation = -4040.660105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.00568 -41.37134 -39.80223 -37.64994 -36.14945 -35.28020 -32.80911 -32.30122 -31.06052 -30.53481 -30.15452 -27.14046 -25.59788 -24.17116 -23.56742 -22.71527 -20.72615 -20.60060 -19.94040 -18.28471 -17.83951 -17.38861 -17.16068 -16.69793 -16.48233 -15.82717 -15.70332 -15.52674 -15.26524 -14.71999 -14.66012 -14.35429 -14.16675 -13.73145 -13.59706 -13.52184 -13.36222 -13.20730 -12.63472 -12.44672 -12.29109 -12.08298 -11.67382 -11.60950 -11.25516 -11.08120 -11.00227 -10.90034 -10.48907 -9.96533 -9.82665 -9.62865 -9.44787 -9.27468 -9.14081 -8.55244 -8.46223 -8.39143 -6.01986 -3.99890 0.76486 0.90269 2.51503 2.76051 2.98220 3.31600 3.34409 3.42615 3.50491 3.91718 4.13958 4.23120 4.27450 4.48838 4.49526 4.59926 4.71983 4.76951 4.85667 4.95951 5.04291 5.07716 5.20048 5.30237 5.34763 5.41816 5.49789 5.56827 5.60468 5.79367 5.84246 5.93812 6.19599 6.25331 6.38622 6.41514 6.82195 6.98316 7.15459 7.31709 7.38240 7.55537 7.60764 7.83723 8.07580 8.54865 9.02342 9.61024 11.11445 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.003033 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.722647 B = 9230.253703 C =10288.509911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.522 4.522 8 H 0.069 0.931 9 C -0.005 4.005 10 C -0.087 4.087 11 C 0.075 3.925 12 H 0.099 0.901 13 N -0.810 5.810 14 C 0.485 3.515 15 O -0.546 6.546 16 N -0.721 5.721 17 C 0.187 3.813 18 H 0.104 0.896 19 C -0.168 4.168 20 C 0.066 3.934 21 O -0.313 6.313 22 C 0.129 3.871 23 C -0.126 4.126 24 C -0.117 4.117 25 C 0.062 3.938 26 F -0.140 7.140 27 C -0.102 4.102 28 C -0.146 4.146 29 H 0.262 0.738 30 H 0.034 0.966 31 H 0.008 0.992 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.351 0.649 35 H 0.336 0.664 36 H 0.407 0.593 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.978 -16.368 -7.808 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.042 4.042 10 C -0.125 4.125 11 C -0.041 4.041 12 H 0.117 0.883 13 N -0.338 5.338 14 C 0.271 3.729 15 O -0.423 6.423 16 N -0.373 5.373 17 C 0.082 3.918 18 H 0.121 0.879 19 C -0.206 4.206 20 C -0.010 4.010 21 O -0.227 6.227 22 C 0.084 3.916 23 C -0.144 4.144 24 C -0.136 4.136 25 C 0.042 3.958 26 F -0.119 7.119 27 C -0.121 4.121 28 C -0.148 4.148 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.242 0.758 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 19.735 -16.065 -7.410 26.505 hybrid contribution 0.645 0.385 0.002 0.751 sum 20.381 -15.680 -7.409 26.761 Atomic orbital electron populations 1.69921 1.06376 1.26871 1.51384 1.25016 0.94698 0.99243 0.94535 0.86775 0.80723 0.83434 0.78418 1.20501 1.21587 1.18397 1.21166 0.89718 0.94326 1.50797 0.91327 1.19488 0.96369 0.91116 0.97224 1.21472 0.87792 1.01671 1.01553 1.21901 0.99519 0.87427 0.95238 0.88294 1.59018 1.15425 1.56009 1.03350 1.22789 0.76407 0.91147 0.82520 1.90673 1.48278 1.66355 1.37003 1.46220 1.66115 1.14210 1.10795 1.19640 0.87996 0.84670 0.99510 0.87859 1.22535 1.01859 0.98026 0.98208 1.22999 0.79182 0.95927 1.02874 1.86014 1.26485 1.61270 1.48909 1.18682 0.91244 0.90893 0.90823 1.20390 0.90627 1.01571 1.01853 1.20947 1.00855 0.96016 0.95769 1.17555 0.89723 0.94085 0.94392 1.91502 1.78538 1.69538 1.72281 1.21241 0.92051 0.99527 0.99280 1.20063 0.96490 0.99119 0.99178 0.92811 0.94743 0.97336 0.92181 0.92146 0.83504 0.85258 0.75796 0.88331 0.89383 0.86573 0.91197 0.84101 0.84094 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.65 9.66 -34.44 -0.33 -14.99 16 8 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 9 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 10 C -0.09 -1.59 4.78 -26.73 -0.13 -1.72 16 11 C 0.08 1.12 3.15 -68.87 -0.22 0.90 16 12 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 13 N -0.81 -12.29 8.44 -5.66 -0.05 -12.34 16 14 C 0.49 6.68 5.63 -10.98 -0.06 6.62 16 15 O -0.55 -8.85 14.17 5.56 0.08 -8.77 16 16 N -0.72 -7.84 4.86 -54.86 -0.27 -8.11 16 17 C 0.19 1.88 2.70 -69.01 -0.19 1.69 16 18 H 0.10 1.18 7.58 -51.93 -0.39 0.79 16 19 C -0.17 -1.17 5.67 -26.49 -0.15 -1.32 16 20 C 0.07 0.41 7.03 37.36 0.26 0.68 16 21 O -0.31 -2.80 10.27 -19.42 -0.20 -3.00 16 22 C 0.13 1.30 6.47 -39.21 -0.25 1.05 16 23 C -0.13 -1.13 9.93 -39.35 -0.39 -1.52 16 24 C -0.12 -1.10 10.02 -39.59 -0.40 -1.49 16 25 C 0.06 0.73 7.30 -39.47 -0.29 0.44 16 26 F -0.14 -1.79 17.27 2.25 0.04 -1.76 16 27 C -0.10 -1.28 9.05 -39.46 -0.36 -1.63 16 28 C -0.15 -1.61 5.56 -104.44 -0.58 -2.19 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.03 0.83 6.81 -51.93 -0.35 0.47 16 31 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.35 5.43 8.58 -39.29 -0.34 5.10 16 35 H 0.34 4.44 9.06 -39.29 -0.36 4.09 16 36 H 0.41 3.69 8.57 -40.82 -0.35 3.34 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.59 8.11 -51.93 -0.42 0.17 16 39 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.14 2.03 4.69 -52.49 -0.25 1.79 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -33.52 355.78 -8.04 -41.55 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.82 Total: 9.01 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -3.29 Total: -11.88 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.46 Total: -47.61 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.12 Total: -11.77 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.52 -8.04 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.871 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds