Wall clock time and date at job start Tue Mar 31 2020 13:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48498 * 109.47471 * 269.99959 * 3 2 1 5 5 H 1.48504 * 109.47232 * 30.00331 * 3 2 1 6 6 H 1.48501 * 109.46984 * 150.00214 * 3 2 1 7 7 C 1.37880 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99546 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00052 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47118 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47216 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.46786 * 304.99769 * 11 10 9 13 13 N 1.46896 * 109.47403 * 64.99595 * 11 10 9 14 14 C 1.50700 * 109.47164 * 185.00058 * 11 10 9 15 15 O 1.21279 * 120.00113 * 259.99858 * 14 11 10 16 16 N 1.34784 * 119.99961 * 79.99626 * 14 11 10 17 17 C 1.46494 * 119.99635 * 180.02562 * 16 14 11 18 18 H 1.08999 * 109.43859 * 35.00058 * 17 16 14 19 19 C 1.53075 * 109.43235 * 154.91265 * 17 16 14 20 20 C 1.53389 * 108.30694 * 168.31540 * 19 17 16 21 21 O 1.42823 * 108.33330 * 295.21484 * 20 19 17 22 22 C 1.35899 * 117.85633 * 49.22607 * 21 20 19 23 23 C 1.39124 * 118.46715 * 163.02409 * 22 21 20 24 24 C 1.37972 * 120.25142 * 179.59795 * 23 22 21 25 25 C 1.38478 * 119.93022 * 0.02562 * 24 23 22 26 26 F 1.35101 * 120.03846 * 180.02562 * 25 24 23 27 27 C 1.38299 * 119.92975 * 0.05766 * 25 24 23 28 28 C 1.38358 * 121.79151 * 342.74082 * 22 21 20 29 29 H 0.96995 * 120.00141 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47405 * 60.00167 * 9 7 2 31 31 H 1.08998 * 109.47422 * 299.99957 * 9 7 2 32 32 H 1.08996 * 109.46899 * 60.00345 * 10 9 7 33 33 H 1.08998 * 109.46940 * 300.00253 * 10 9 7 34 34 H 1.00903 * 110.99667 * 60.00651 * 13 11 10 35 35 H 1.00904 * 110.99976 * 183.95134 * 13 11 10 36 36 H 0.96995 * 120.00015 * 359.72695 * 16 14 11 37 37 H 1.08997 * 109.69345 * 287.97285 * 19 17 16 38 38 H 1.08997 * 109.69753 * 48.57353 * 19 17 16 39 39 H 1.09007 * 109.68429 * 175.51907 * 20 19 17 40 40 H 1.08997 * 109.71703 * 54.93738 * 20 19 17 41 41 H 1.07996 * 119.87635 * 359.60293 * 23 22 21 42 42 H 1.08003 * 120.03675 * 179.97438 * 24 23 22 43 43 H 1.07996 * 119.84606 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0009 12 1 5.9149 -2.0471 -0.8429 13 7 6.0413 -2.0510 1.2542 14 6 6.0540 -4.0519 -0.1247 15 8 6.4281 -4.6509 0.8613 16 7 6.0875 -4.6520 -1.3310 17 6 6.5754 -6.0281 -1.4511 18 1 6.2864 -6.5941 -0.5656 19 6 5.9628 -6.6790 -2.6939 20 6 6.7025 -7.9956 -2.9624 21 8 8.0589 -7.6903 -3.2893 22 6 8.7344 -6.8429 -2.4692 23 6 10.1230 -6.8095 -2.5487 24 6 10.8452 -5.9570 -1.7392 25 6 10.1867 -5.1315 -0.8434 26 9 10.8917 -4.2955 -0.0501 27 6 8.8065 -5.1641 -0.7613 28 6 8.0782 -6.0189 -1.5722 29 1 -0.4850 0.8400 -0.0004 30 1 3.8753 -0.6804 0.8888 31 1 3.8746 -0.6800 -0.8911 32 1 3.6580 -3.1505 -0.8907 33 1 3.6586 -3.1501 0.8892 34 1 5.7178 -2.5799 2.0502 35 1 7.0478 -1.9805 1.2518 36 1 5.7846 -4.1743 -2.1190 37 1 4.9060 -6.8810 -2.5196 38 1 6.0739 -6.0134 -3.5498 39 1 6.2325 -8.5175 -3.7961 40 1 6.6718 -8.6230 -2.0716 41 1 10.6376 -7.4532 -3.2467 42 1 11.9231 -5.9342 -1.8035 43 1 8.2943 -4.5200 -0.0619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424119620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:55 Heat of formation + Delta-G solvation = -126.032293 kcal Electronic energy + Delta-G solvation = -27231.488646 eV Core-core repulsion = 23189.761488 eV Total energy + Delta-G solvation = -4041.727158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.91491 -42.16421 -40.81575 -38.36705 -37.20195 -36.55721 -34.79844 -33.14113 -32.30022 -31.75704 -30.93396 -28.57814 -26.67487 -24.95008 -24.79650 -23.63514 -22.19358 -21.52655 -21.12178 -19.10792 -18.97817 -18.55295 -18.17564 -18.03261 -17.46208 -16.99575 -16.67142 -16.31978 -16.21456 -16.08003 -15.65713 -15.54709 -15.32868 -14.92494 -14.71033 -14.48939 -14.29019 -14.20896 -13.97585 -13.93414 -13.49901 -12.99667 -12.83009 -12.77863 -12.51486 -12.36976 -12.00595 -11.84821 -11.75044 -11.70646 -11.60644 -11.31756 -11.14549 -10.71176 -10.36571 -10.09977 -9.70438 -9.17480 -8.25397 -6.28353 -0.00293 0.09588 1.39290 1.40876 1.43288 1.56816 1.96100 2.25645 2.41183 2.51109 3.11428 3.13860 3.42049 3.47370 3.53502 3.61862 3.76072 3.87677 4.02006 4.05401 4.11467 4.24361 4.25779 4.34944 4.45909 4.61164 4.69901 4.78252 4.81586 4.84272 4.92865 5.04710 5.07456 5.13948 5.14954 5.32896 5.49777 5.61186 5.65105 5.73775 6.02776 6.30144 6.32108 6.36377 6.46497 6.80438 7.05122 7.36382 8.91403 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.003033 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.722647 B = 9230.253703 C =10288.509911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.003 3.997 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.246 1.246 7 C -0.530 4.530 8 H 0.030 0.970 9 C 0.001 3.999 10 C -0.077 4.077 11 C 0.083 3.917 12 H 0.118 0.882 13 N -0.819 5.819 14 C 0.490 3.510 15 O -0.572 6.572 16 N -0.708 5.708 17 C 0.185 3.815 18 H 0.086 0.914 19 C -0.161 4.161 20 C 0.061 3.939 21 O -0.316 6.316 22 C 0.130 3.870 23 C -0.122 4.122 24 C -0.108 4.108 25 C 0.038 3.962 26 F -0.152 7.152 27 C -0.121 4.121 28 C -0.156 4.156 29 H 0.265 0.735 30 H 0.027 0.973 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.347 0.653 35 H 0.347 0.653 36 H 0.417 0.583 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.074 0.926 41 H 0.169 0.831 42 H 0.167 0.833 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.067 -16.896 -9.803 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.193 4.193 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.170 1.170 7 C -0.568 4.568 8 H 0.049 0.951 9 C -0.036 4.036 10 C -0.116 4.116 11 C -0.032 4.032 12 H 0.136 0.864 13 N -0.348 5.348 14 C 0.276 3.724 15 O -0.452 6.452 16 N -0.360 5.360 17 C 0.080 3.920 18 H 0.104 0.896 19 C -0.199 4.199 20 C -0.013 4.013 21 O -0.230 6.230 22 C 0.083 3.917 23 C -0.140 4.140 24 C -0.127 4.127 25 C 0.019 3.981 26 F -0.131 7.131 27 C -0.140 4.140 28 C -0.158 4.158 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.254 0.746 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.164 0.836 40 H 0.092 0.908 41 H 0.186 0.814 42 H 0.185 0.815 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 21.840 -16.614 -9.445 29.021 hybrid contribution -0.056 0.417 0.599 0.733 sum 21.784 -16.197 -8.846 28.550 Atomic orbital electron populations 1.70075 1.08347 1.28025 1.53161 1.25988 0.95531 1.03501 0.94282 0.85656 0.79555 0.78218 0.79218 1.18920 1.21593 1.16967 1.21561 0.92466 0.92897 1.49870 0.95126 1.19376 0.92912 0.94087 0.97243 1.21251 0.90439 0.98648 1.01223 1.21703 0.96918 0.88720 0.95892 0.86418 1.59016 1.16386 1.56050 1.03318 1.22432 0.76385 0.90582 0.83038 1.90667 1.49660 1.66716 1.38163 1.46097 1.64962 1.14712 1.10219 1.19745 0.87985 0.83804 1.00436 0.89639 1.22539 1.02421 0.98280 0.96649 1.23278 0.77969 0.95628 1.04458 1.86021 1.27655 1.60718 1.48579 1.18841 0.91894 0.90604 0.90333 1.20752 0.90346 1.01245 1.01687 1.21231 1.02187 0.94772 0.94489 1.17828 0.89712 0.95091 0.95455 1.91464 1.78697 1.70094 1.72823 1.21177 0.92612 1.00387 0.99840 1.20105 0.96740 0.99450 0.99530 0.92663 0.95426 0.96023 0.91165 0.94011 0.83952 0.84023 0.74554 0.87049 0.88666 0.83573 0.90779 0.81381 0.81516 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 2 C 0.00 0.19 5.47 84.65 0.46 0.65 16 3 Si 0.95 44.59 27.47 68.60 1.88 46.48 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 7 C -0.53 -30.23 9.66 25.60 0.25 -29.99 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 9 C 0.00 0.06 3.93 29.85 0.12 0.18 16 10 C -0.08 -2.81 4.78 30.60 0.15 -2.67 16 11 C 0.08 2.40 3.15 44.17 0.14 2.54 16 12 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 13 N -0.82 -24.38 8.44 -171.81 -1.45 -25.83 16 14 C 0.49 13.34 5.63 87.66 0.49 13.83 16 15 O -0.57 -18.88 14.17 -3.03 -0.04 -18.92 16 16 N -0.71 -14.71 4.86 -445.87 -2.17 -16.88 16 17 C 0.19 3.54 2.70 44.30 0.12 3.66 16 18 H 0.09 1.96 7.58 -2.39 -0.02 1.94 16 19 C -0.16 -1.87 5.67 30.75 0.17 -1.70 16 20 C 0.06 0.60 7.03 72.11 0.51 1.10 16 21 O -0.32 -4.74 10.27 -92.41 -0.95 -5.69 16 22 C 0.13 2.33 6.47 22.51 0.15 2.47 16 23 C -0.12 -1.86 9.93 22.42 0.22 -1.63 16 24 C -0.11 -1.81 10.02 22.26 0.22 -1.59 16 25 C 0.04 0.89 7.30 22.34 0.16 1.05 16 26 F -0.15 -3.92 17.27 44.97 0.78 -3.15 16 27 C -0.12 -3.03 9.05 22.35 0.20 -2.83 16 28 C -0.16 -3.29 5.56 -19.75 -0.11 -3.40 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.03 1.29 6.81 -2.39 -0.02 1.28 16 31 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.35 10.82 8.58 -89.69 -0.77 10.05 16 35 H 0.35 8.98 9.06 -89.69 -0.81 8.17 16 36 H 0.42 6.83 8.57 -92.71 -0.79 6.03 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.01 8.11 -2.39 -0.02 0.99 16 39 H 0.15 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.12 3.59 4.69 -2.91 -0.01 3.57 16 Total: -1.00 -74.30 355.78 0.25 -74.05 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -1.36 Total: 28.11 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 3.25 Total: -18.30 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -3.32 Total: -102.57 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.99 Total: -24.61 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.48 kcal Total: -74.30 0.25 -74.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.986 kcal (2) G-P(sol) polarization free energy of solvation -74.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds