Wall clock time and date at job start Tue Mar 31 2020 13:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00258 * 2 1 4 4 H 1.48509 * 109.46999 * 270.00320 * 3 2 1 5 5 H 1.48502 * 109.47149 * 29.99960 * 3 2 1 6 6 H 1.48498 * 109.47252 * 150.00063 * 3 2 1 7 7 C 1.37875 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00169 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47182 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46838 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47235 * 55.00699 * 11 10 9 13 13 N 1.46897 * 109.47563 * 295.00297 * 11 10 9 14 14 C 1.50702 * 109.46857 * 175.00198 * 11 10 9 15 15 O 1.21275 * 120.00245 * 100.00530 * 14 11 10 16 16 N 1.34787 * 119.99991 * 280.00376 * 14 11 10 17 17 C 1.46501 * 119.99658 * 180.02562 * 16 14 11 18 18 H 1.09000 * 109.40587 * 324.89313 * 17 16 14 19 19 C 1.53071 * 109.43053 * 204.99710 * 17 16 14 20 20 C 1.53417 * 108.28579 * 191.65984 * 19 17 16 21 21 O 1.42825 * 108.38611 * 64.71503 * 20 19 17 22 22 C 1.35901 * 117.86860 * 310.87478 * 21 20 19 23 23 C 1.39129 * 118.47356 * 197.12742 * 22 21 20 24 24 C 1.37964 * 120.25224 * 180.21661 * 23 22 21 25 25 C 1.38481 * 119.93594 * 0.02562 * 24 23 22 26 26 F 1.35104 * 120.03843 * 179.97438 * 25 24 23 27 27 C 1.38288 * 119.92440 * 359.90942 * 25 24 23 28 28 C 1.38356 * 121.79556 * 17.19560 * 22 21 20 29 29 H 0.97008 * 119.99910 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47098 * 59.99974 * 9 7 2 31 31 H 1.09004 * 109.47077 * 299.99896 * 9 7 2 32 32 H 1.08999 * 109.46894 * 60.00132 * 10 9 7 33 33 H 1.08991 * 109.46992 * 300.00124 * 10 9 7 34 34 H 1.00901 * 111.00049 * 300.00090 * 13 11 10 35 35 H 1.00898 * 111.00081 * 63.95637 * 13 11 10 36 36 H 0.97001 * 119.99736 * 359.97438 * 16 14 11 37 37 H 1.09008 * 109.70188 * 71.97038 * 19 17 16 38 38 H 1.08997 * 109.70840 * 311.36559 * 19 17 16 39 39 H 1.08998 * 109.67842 * 184.43310 * 20 19 17 40 40 H 1.08997 * 109.68186 * 304.98845 * 20 19 17 41 41 H 1.07998 * 119.86869 * 0.20356 * 23 22 21 42 42 H 1.08006 * 120.03544 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.85340 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 1 5.9155 -2.0470 0.8392 13 7 6.0401 -2.0518 -1.2580 14 6 6.0538 -4.0521 0.1217 15 8 6.4271 -4.6515 -0.8642 16 7 6.0882 -4.6518 1.3283 17 6 6.5771 -6.0275 1.4487 18 1 6.2863 -6.5940 0.5641 19 6 5.9672 -6.6776 2.6932 20 6 6.7083 -7.9940 2.9608 21 8 8.0659 -7.6893 3.2831 22 6 8.7390 -6.8415 2.4614 23 6 10.1280 -6.8108 2.5338 24 6 10.8479 -5.9607 1.7198 25 6 10.1866 -5.1339 0.8272 26 9 10.8894 -4.3003 0.0294 27 6 8.8061 -5.1635 0.7523 28 6 8.0802 -6.0173 1.5664 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6805 0.8888 31 1 3.8745 -0.6801 -0.8912 32 1 3.6577 -3.1507 -0.8907 33 1 3.6584 -3.1502 0.8892 34 1 5.7160 -2.5809 -2.0536 35 1 5.7707 -1.0824 -1.3343 36 1 5.7899 -4.1722 2.1169 37 1 4.9099 -6.8796 2.5215 38 1 6.0804 -6.0117 3.5486 39 1 6.2408 -8.5151 3.7962 40 1 6.6743 -8.6219 2.0705 41 1 10.6447 -7.4548 3.2301 42 1 11.9261 -5.9401 1.7787 43 1 8.2915 -4.5179 0.0561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424119621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:58 Heat of formation + Delta-G solvation = -101.512929 kcal Electronic energy + Delta-G solvation = -27221.169775 eV Core-core repulsion = 23180.505856 eV Total energy + Delta-G solvation = -4040.663919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.88304 -41.28429 -39.66013 -37.56630 -36.18580 -35.40076 -32.86500 -32.23192 -30.97798 -30.37464 -30.06727 -27.22960 -25.54743 -24.10453 -23.66630 -22.69981 -20.69545 -20.61992 -19.95275 -18.21383 -17.77080 -17.37035 -17.25328 -16.69238 -16.42000 -15.68926 -15.44631 -15.32859 -14.89222 -14.75927 -14.46145 -14.34887 -14.23335 -13.81163 -13.57895 -13.40262 -13.24298 -13.13073 -12.87587 -12.70543 -12.22102 -12.10195 -11.82742 -11.52760 -11.39374 -11.18138 -11.03139 -10.91512 -10.42064 -10.16865 -9.91117 -9.56602 -9.36200 -9.33843 -9.17335 -8.66034 -8.39433 -8.31160 -6.15683 -4.15574 0.85275 1.00289 2.67017 2.82022 3.02145 3.22439 3.30988 3.31855 3.39206 4.00648 4.20769 4.30746 4.34214 4.34697 4.56662 4.66485 4.83113 4.89254 4.97152 5.00491 5.12134 5.13409 5.17351 5.26663 5.37653 5.48241 5.51914 5.57865 5.64457 5.88061 5.95253 6.04760 6.07271 6.25432 6.30403 6.48849 6.59492 7.03178 7.05865 7.16506 7.23210 7.47403 7.62143 7.72000 8.22372 8.39987 8.87861 9.45548 10.97472 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.003030 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.144826 B = 9238.973181 C =10295.608011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.129 4.129 11 C 0.071 3.929 12 H 0.098 0.902 13 N -0.830 5.830 14 C 0.527 3.473 15 O -0.530 6.530 16 N -0.726 5.726 17 C 0.191 3.809 18 H 0.104 0.896 19 C -0.168 4.168 20 C 0.066 3.934 21 O -0.313 6.313 22 C 0.128 3.872 23 C -0.127 4.127 24 C -0.118 4.118 25 C 0.063 3.937 26 F -0.139 7.139 27 C -0.100 4.100 28 C -0.148 4.148 29 H 0.264 0.736 30 H 0.018 0.982 31 H 0.012 0.988 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.349 0.651 35 H 0.352 0.648 36 H 0.405 0.595 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.160 -15.195 7.724 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.169 4.169 11 C -0.044 4.044 12 H 0.116 0.884 13 N -0.363 5.363 14 C 0.315 3.685 15 O -0.406 6.406 16 N -0.378 5.378 17 C 0.086 3.914 18 H 0.122 0.878 19 C -0.206 4.206 20 C -0.010 4.010 21 O -0.228 6.228 22 C 0.082 3.918 23 C -0.146 4.146 24 C -0.137 4.137 25 C 0.043 3.957 26 F -0.118 7.118 27 C -0.119 4.119 28 C -0.150 4.150 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.240 0.760 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.088 0.912 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 19.073 -15.717 7.404 25.800 hybrid contribution -0.943 1.564 -0.124 1.831 sum 18.130 -14.153 7.280 24.125 Atomic orbital electron populations 1.69911 1.06352 1.27065 1.50555 1.25043 0.94758 0.99251 0.94366 0.86770 0.80309 0.83519 0.78622 1.20182 1.21296 1.18971 1.21052 0.89193 0.94527 1.51506 0.91079 1.19575 0.97583 0.91289 0.96350 1.22201 0.91055 1.01222 1.02374 1.21529 0.95808 0.91326 0.95720 0.88424 1.58732 1.66724 1.07535 1.03273 1.20909 0.76250 0.88902 0.82469 1.90661 1.47051 1.65860 1.37000 1.46050 1.66970 1.14323 1.10484 1.19600 0.88019 0.84345 0.99448 0.87811 1.22536 1.01807 0.98040 0.98224 1.22989 0.79215 0.95910 1.02850 1.86007 1.26385 1.61295 1.49064 1.18677 0.91250 0.90949 0.90883 1.20364 0.90639 1.01703 1.01898 1.20942 1.00792 0.96100 0.95841 1.17562 0.89808 0.94030 0.94251 1.91506 1.78613 1.69673 1.71995 1.21362 0.92159 0.99276 0.99123 1.20067 0.96470 0.99243 0.99247 0.92588 0.96333 0.97012 0.92004 0.91859 0.83775 0.83325 0.75961 0.88386 0.89421 0.86660 0.91216 0.84205 0.84182 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.52 -14.26 9.66 -34.44 -0.33 -14.59 16 8 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 9 C -0.01 -0.23 3.81 -27.88 -0.11 -0.33 16 10 C -0.13 -2.30 4.78 -26.73 -0.13 -2.42 16 11 C 0.07 1.08 3.21 -68.87 -0.22 0.86 16 12 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 13 N -0.83 -12.88 8.94 -5.65 -0.05 -12.93 16 14 C 0.53 7.73 5.64 -10.98 -0.06 7.66 16 15 O -0.53 -9.21 14.16 5.56 0.08 -9.13 16 16 N -0.73 -8.27 4.86 -54.86 -0.27 -8.53 16 17 C 0.19 2.00 2.70 -69.01 -0.19 1.81 16 18 H 0.10 1.21 7.58 -51.93 -0.39 0.82 16 19 C -0.17 -1.21 5.67 -26.48 -0.15 -1.36 16 20 C 0.07 0.43 7.03 37.37 0.26 0.69 16 21 O -0.31 -2.91 10.27 -19.43 -0.20 -3.11 16 22 C 0.13 1.35 6.47 -39.21 -0.25 1.09 16 23 C -0.13 -1.21 9.93 -39.35 -0.39 -1.60 16 24 C -0.12 -1.18 10.02 -39.59 -0.40 -1.58 16 25 C 0.06 0.80 7.30 -39.47 -0.29 0.51 16 26 F -0.14 -1.95 17.27 2.25 0.04 -1.91 16 27 C -0.10 -1.35 9.05 -39.46 -0.36 -1.71 16 28 C -0.15 -1.72 5.56 -104.44 -0.58 -2.30 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 31 H 0.01 0.25 6.30 -51.93 -0.33 -0.08 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.35 5.51 8.58 -39.29 -0.34 5.17 16 35 H 0.35 5.31 7.55 -39.29 -0.30 5.01 16 36 H 0.41 3.83 8.58 -40.82 -0.35 3.48 16 37 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 39 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 43 H 0.15 2.36 4.68 -52.49 -0.25 2.12 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -32.59 353.81 -7.96 -40.55 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.71 Total: 11.30 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -3.29 Total: -11.46 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.46 Total: -47.74 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.12 Total: -12.24 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.59 -7.96 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.963 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds