Wall clock time and date at job start Tue Mar 31 2020 13:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00258 * 2 1 4 4 H 1.48509 * 109.46999 * 270.00320 * 3 2 1 5 5 H 1.48502 * 109.47149 * 29.99960 * 3 2 1 6 6 H 1.48498 * 109.47252 * 150.00063 * 3 2 1 7 7 C 1.37875 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00169 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47182 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46838 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47235 * 55.00699 * 11 10 9 13 13 N 1.46897 * 109.47563 * 295.00297 * 11 10 9 14 14 C 1.50702 * 109.46857 * 175.00198 * 11 10 9 15 15 O 1.21275 * 120.00245 * 100.00530 * 14 11 10 16 16 N 1.34787 * 119.99991 * 280.00376 * 14 11 10 17 17 C 1.46501 * 119.99658 * 180.02562 * 16 14 11 18 18 H 1.09000 * 109.40587 * 324.89313 * 17 16 14 19 19 C 1.53071 * 109.43053 * 204.99710 * 17 16 14 20 20 C 1.53417 * 108.28579 * 191.65984 * 19 17 16 21 21 O 1.42825 * 108.38611 * 64.71503 * 20 19 17 22 22 C 1.35901 * 117.86860 * 310.87478 * 21 20 19 23 23 C 1.39129 * 118.47356 * 197.12742 * 22 21 20 24 24 C 1.37964 * 120.25224 * 180.21661 * 23 22 21 25 25 C 1.38481 * 119.93594 * 0.02562 * 24 23 22 26 26 F 1.35104 * 120.03843 * 179.97438 * 25 24 23 27 27 C 1.38288 * 119.92440 * 359.90942 * 25 24 23 28 28 C 1.38356 * 121.79556 * 17.19560 * 22 21 20 29 29 H 0.97008 * 119.99910 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47098 * 59.99974 * 9 7 2 31 31 H 1.09004 * 109.47077 * 299.99896 * 9 7 2 32 32 H 1.08999 * 109.46894 * 60.00132 * 10 9 7 33 33 H 1.08991 * 109.46992 * 300.00124 * 10 9 7 34 34 H 1.00901 * 111.00049 * 300.00090 * 13 11 10 35 35 H 1.00898 * 111.00081 * 63.95637 * 13 11 10 36 36 H 0.97001 * 119.99736 * 359.97438 * 16 14 11 37 37 H 1.09008 * 109.70188 * 71.97038 * 19 17 16 38 38 H 1.08997 * 109.70840 * 311.36559 * 19 17 16 39 39 H 1.08998 * 109.67842 * 184.43310 * 20 19 17 40 40 H 1.08997 * 109.68186 * 304.98845 * 20 19 17 41 41 H 1.07998 * 119.86869 * 0.20356 * 23 22 21 42 42 H 1.08006 * 120.03544 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.85340 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 1 5.9155 -2.0470 0.8392 13 7 6.0401 -2.0518 -1.2580 14 6 6.0538 -4.0521 0.1217 15 8 6.4271 -4.6515 -0.8642 16 7 6.0882 -4.6518 1.3283 17 6 6.5771 -6.0275 1.4487 18 1 6.2863 -6.5940 0.5641 19 6 5.9672 -6.6776 2.6932 20 6 6.7083 -7.9940 2.9608 21 8 8.0659 -7.6893 3.2831 22 6 8.7390 -6.8415 2.4614 23 6 10.1280 -6.8108 2.5338 24 6 10.8479 -5.9607 1.7198 25 6 10.1866 -5.1339 0.8272 26 9 10.8894 -4.3003 0.0294 27 6 8.8061 -5.1635 0.7523 28 6 8.0802 -6.0173 1.5664 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6805 0.8888 31 1 3.8745 -0.6801 -0.8912 32 1 3.6577 -3.1507 -0.8907 33 1 3.6584 -3.1502 0.8892 34 1 5.7160 -2.5809 -2.0536 35 1 5.7707 -1.0824 -1.3343 36 1 5.7899 -4.1722 2.1169 37 1 4.9099 -6.8796 2.5215 38 1 6.0804 -6.0117 3.5486 39 1 6.2408 -8.5151 3.7962 40 1 6.6743 -8.6219 2.0705 41 1 10.6447 -7.4548 3.2301 42 1 11.9261 -5.9401 1.7787 43 1 8.2915 -4.5179 0.0561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424119621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:58 Heat of formation + Delta-G solvation = -125.424232 kcal Electronic energy + Delta-G solvation = -27222.206647 eV Core-core repulsion = 23180.505856 eV Total energy + Delta-G solvation = -4041.700790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.87233 -42.11467 -40.72689 -38.33388 -37.38864 -36.57255 -34.82820 -33.12047 -32.09775 -31.72200 -30.90067 -28.61297 -26.66843 -25.07316 -24.79066 -23.62631 -22.25393 -21.49623 -21.09174 -19.22212 -18.95358 -18.54286 -18.20447 -18.08293 -17.36876 -16.64190 -16.37692 -16.30653 -16.20400 -15.95164 -15.72334 -15.61926 -15.26945 -15.06303 -14.66726 -14.52001 -14.34575 -14.18254 -14.01892 -13.90266 -13.60742 -13.09379 -12.96112 -12.77804 -12.59147 -12.33148 -12.08290 -11.93083 -11.81042 -11.69444 -11.65940 -11.41669 -10.84806 -10.77942 -10.32255 -10.05131 -9.68375 -9.14170 -8.31042 -6.36306 0.03132 0.13610 1.37640 1.38709 1.49771 1.51317 1.94842 2.27284 2.34941 2.54084 3.04823 3.18222 3.46059 3.51952 3.64083 3.69585 3.72967 3.91985 4.05642 4.07260 4.13421 4.17111 4.29364 4.38661 4.48607 4.56823 4.63852 4.71066 4.82307 4.87003 4.93726 4.96362 5.08813 5.11405 5.19448 5.34627 5.37410 5.45824 5.61620 5.64840 6.03111 6.23976 6.33284 6.43613 6.46466 6.72322 7.14195 7.28696 8.85644 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.003030 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.144826 B = 9238.973181 C =10295.608011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.238 1.238 7 C -0.533 4.533 8 H 0.029 0.971 9 C -0.007 4.007 10 C -0.116 4.116 11 C 0.080 3.920 12 H 0.116 0.884 13 N -0.832 5.832 14 C 0.527 3.473 15 O -0.562 6.562 16 N -0.712 5.712 17 C 0.188 3.812 18 H 0.087 0.913 19 C -0.160 4.160 20 C 0.061 3.939 21 O -0.315 6.315 22 C 0.130 3.870 23 C -0.122 4.122 24 C -0.108 4.108 25 C 0.037 3.963 26 F -0.153 7.153 27 C -0.121 4.121 28 C -0.157 4.157 29 H 0.266 0.734 30 H 0.031 0.969 31 H 0.022 0.978 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.346 0.654 35 H 0.355 0.645 36 H 0.416 0.584 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.074 0.926 41 H 0.169 0.831 42 H 0.167 0.833 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.272 -15.660 9.766 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.161 1.161 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.044 4.044 10 C -0.156 4.156 11 C -0.036 4.036 12 H 0.134 0.866 13 N -0.364 5.364 14 C 0.315 3.685 15 O -0.440 6.440 16 N -0.364 5.364 17 C 0.083 3.917 18 H 0.105 0.895 19 C -0.198 4.198 20 C -0.013 4.013 21 O -0.229 6.229 22 C 0.084 3.916 23 C -0.141 4.141 24 C -0.126 4.126 25 C 0.018 3.982 26 F -0.132 7.132 27 C -0.140 4.140 28 C -0.159 4.159 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.254 0.746 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.165 0.835 40 H 0.093 0.907 41 H 0.187 0.813 42 H 0.185 0.815 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 21.197 -16.204 9.482 28.317 hybrid contribution -1.658 1.565 -0.733 2.395 sum 19.539 -14.640 8.749 25.936 Atomic orbital electron populations 1.70076 1.08486 1.28216 1.52515 1.26051 0.95592 1.03674 0.94036 0.85638 0.79749 0.77966 0.79158 1.19427 1.21379 1.16118 1.21436 0.92143 0.92946 1.50612 0.95296 1.19507 0.93863 0.93934 0.97127 1.22004 0.93124 0.98683 1.01818 1.21454 0.93596 0.92244 0.96257 0.86585 1.58745 1.66599 1.07714 1.03336 1.20781 0.76143 0.88595 0.83025 1.90650 1.48634 1.66387 1.38303 1.45935 1.65763 1.14853 1.09844 1.19734 0.87903 0.83497 1.00533 0.89504 1.22541 1.02443 0.98273 0.96550 1.23284 0.77925 0.95612 1.04520 1.86018 1.27619 1.60655 1.48648 1.18825 0.91895 0.90588 0.90298 1.20742 0.90371 1.01293 1.01658 1.21223 1.02152 0.94783 0.94487 1.17858 0.89785 0.95156 0.95428 1.91461 1.78809 1.70322 1.72630 1.21248 0.92748 1.00258 0.99772 1.20114 0.96810 0.99467 0.99501 0.92520 0.95088 0.96019 0.93837 0.91309 0.84100 0.82984 0.74649 0.86962 0.88671 0.83538 0.90742 0.81310 0.81522 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.68 13.96 21.45 0.30 -58.38 16 2 C 0.00 0.19 5.47 84.65 0.46 0.65 16 3 Si 0.95 42.32 27.47 68.60 1.88 44.21 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 7 C -0.53 -29.42 9.66 25.60 0.25 -29.18 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 9 C -0.01 -0.29 3.81 29.85 0.11 -0.18 16 10 C -0.12 -4.10 4.78 30.59 0.15 -3.95 16 11 C 0.08 2.34 3.21 44.17 0.14 2.48 16 12 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 13 N -0.83 -25.27 8.94 -171.80 -1.54 -26.81 16 14 C 0.53 15.40 5.64 87.66 0.49 15.90 16 15 O -0.56 -20.00 14.16 -3.01 -0.04 -20.05 16 16 N -0.71 -15.67 4.86 -445.87 -2.17 -17.84 16 17 C 0.19 3.77 2.70 44.29 0.12 3.89 16 18 H 0.09 2.05 7.58 -2.39 -0.02 2.03 16 19 C -0.16 -1.93 5.67 30.76 0.17 -1.75 16 20 C 0.06 0.62 7.03 72.12 0.51 1.12 16 21 O -0.32 -4.90 10.27 -92.44 -0.95 -5.85 16 22 C 0.13 2.46 6.47 22.51 0.15 2.60 16 23 C -0.12 -1.98 9.93 22.42 0.22 -1.76 16 24 C -0.11 -1.95 10.02 22.26 0.22 -1.73 16 25 C 0.04 0.93 7.30 22.34 0.16 1.10 16 26 F -0.15 -4.36 17.27 44.97 0.78 -3.59 16 27 C -0.12 -3.31 9.05 22.35 0.20 -3.11 16 28 C -0.16 -3.51 5.56 -19.75 -0.11 -3.62 16 29 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 30 H 0.03 1.25 7.20 -2.39 -0.02 1.23 16 31 H 0.02 0.88 6.30 -2.38 -0.02 0.87 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.35 10.96 8.58 -89.69 -0.77 10.19 16 35 H 0.35 10.21 7.55 -89.70 -0.68 9.53 16 36 H 0.42 7.19 8.58 -92.71 -0.80 6.39 16 37 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 1.04 8.11 -2.39 -0.02 1.02 16 39 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 42 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.12 4.06 4.68 -2.91 -0.01 4.05 16 Total: -1.00 -73.33 353.81 0.30 -73.03 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -1.22 Total: 32.80 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 3.25 Total: -17.53 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -3.40 Total: -103.03 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.99 Total: -25.89 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.59 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.21 kcal Total: -73.33 0.30 -73.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.399 kcal (2) G-P(sol) polarization free energy of solvation -73.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds