Wall clock time and date at job start Tue Mar 31 2020 13:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99885 * 2 1 4 4 H 1.48500 * 109.47235 * 240.00123 * 3 2 1 5 5 H 1.48501 * 109.47463 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47109 * 119.99952 * 3 2 1 7 7 C 1.37873 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00426 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47502 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47404 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47153 * 54.99686 * 11 10 9 13 13 N 1.46896 * 109.46848 * 294.99714 * 11 10 9 14 14 C 1.50701 * 109.47212 * 174.99684 * 11 10 9 15 15 O 1.21286 * 119.99821 * 99.99758 * 14 11 10 16 16 N 1.34770 * 120.00293 * 280.00118 * 14 11 10 17 17 C 1.46505 * 120.00284 * 179.97438 * 16 14 11 18 18 H 1.08999 * 109.42839 * 34.91124 * 17 16 14 19 19 C 1.53065 * 109.43328 * 154.77457 * 17 16 14 20 20 C 1.53411 * 108.29933 * 168.27581 * 19 17 16 21 21 O 1.42827 * 108.36761 * 295.28184 * 20 19 17 22 22 C 1.35907 * 117.85617 * 49.20404 * 21 20 19 23 23 C 1.39130 * 118.46321 * 163.02851 * 22 21 20 24 24 C 1.37971 * 120.24785 * 179.60296 * 23 22 21 25 25 C 1.38478 * 119.93105 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.03483 * 180.02562 * 25 24 23 27 27 C 1.38297 * 119.92949 * 0.06759 * 25 24 23 28 28 C 1.38353 * 121.79402 * 342.73771 * 22 21 20 29 29 H 0.97002 * 119.99862 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46946 * 59.99522 * 9 7 2 31 31 H 1.09008 * 109.46848 * 299.99960 * 9 7 2 32 32 H 1.09000 * 109.47017 * 59.99496 * 10 9 7 33 33 H 1.09008 * 109.46970 * 299.99804 * 10 9 7 34 34 H 1.00907 * 110.99811 * 176.04211 * 13 11 10 35 35 H 1.00900 * 111.00550 * 299.99950 * 13 11 10 36 36 H 0.97004 * 119.99647 * 0.02562 * 16 14 11 37 37 H 1.09003 * 109.69686 * 287.97615 * 19 17 16 38 38 H 1.09001 * 109.69894 * 48.57579 * 19 17 16 39 39 H 1.08995 * 109.69040 * 175.56158 * 20 19 17 40 40 H 1.08997 * 109.71305 * 55.01651 * 20 19 17 41 41 H 1.08000 * 119.87171 * 359.59550 * 23 22 21 42 42 H 1.07990 * 120.03166 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.84817 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 1 0.7884 -5.0076 -0.8396 13 7 0.7280 -5.1175 1.2575 14 6 2.4549 -6.1299 -0.1202 15 8 2.7863 -6.7527 0.8664 16 7 2.9583 -6.4598 -1.3260 17 6 3.9062 -7.5705 -1.4452 18 1 3.6449 -8.3487 -0.7281 19 6 3.8434 -8.1438 -2.8630 20 6 5.0336 -9.0931 -3.0519 21 8 6.2368 -8.3273 -2.9741 22 6 6.3804 -7.4752 -1.9251 23 6 7.6531 -6.9980 -1.6280 24 6 7.8399 -6.1248 -0.5762 25 6 6.7574 -5.7207 0.1870 26 9 6.9378 -4.8654 1.2171 27 6 5.4915 -6.1944 -0.1058 28 6 5.3005 -7.0727 -1.1597 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8896 31 1 0.6240 -2.5567 0.8904 32 1 2.8712 -3.6039 0.8922 33 1 2.8725 -3.6047 -0.8878 34 1 0.1636 -5.9540 1.2555 35 1 1.3475 -5.1012 2.0538 36 1 2.6935 -5.9614 -2.1150 37 1 2.9110 -8.6925 -2.9964 38 1 3.9007 -7.3335 -3.5898 39 1 4.9677 -9.5751 -4.0273 40 1 5.0286 -9.8497 -2.2674 41 1 8.4979 -7.3123 -2.2229 42 1 8.8293 -5.7568 -0.3484 43 1 4.6482 -5.8788 0.4905 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424119623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:01 Heat of formation + Delta-G solvation = -103.811387 kcal Electronic energy + Delta-G solvation = -27543.470243 eV Core-core repulsion = 23502.706656 eV Total energy + Delta-G solvation = -4040.763587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.78421 -41.27680 -39.71291 -37.52207 -36.05170 -35.14766 -32.82441 -32.22549 -30.94694 -30.16723 -29.97521 -26.85571 -25.39836 -24.08759 -23.58139 -22.64046 -20.77103 -20.58224 -19.89173 -18.13515 -17.74472 -17.24389 -17.07464 -16.53384 -16.09930 -15.64809 -15.49437 -15.38075 -15.19466 -14.74267 -14.52228 -14.38443 -14.11180 -13.67132 -13.54542 -13.36770 -13.30847 -13.05837 -12.35030 -12.20694 -12.08690 -11.94229 -11.57531 -11.48820 -11.18225 -10.89654 -10.87352 -10.70432 -10.58774 -10.21627 -9.82649 -9.40022 -9.35473 -9.15104 -9.01719 -8.39836 -8.26312 -8.22252 -5.93768 -3.95879 0.91033 1.06401 2.58861 2.85560 3.06261 3.37090 3.41287 3.43947 3.44869 4.03790 4.20649 4.31561 4.37728 4.50309 4.58380 4.65407 4.83465 4.90748 4.93918 5.04804 5.11192 5.16524 5.23991 5.41665 5.46270 5.49028 5.55655 5.67574 5.76782 5.93367 6.00759 6.08585 6.28525 6.40010 6.54208 6.60941 7.05456 7.09065 7.27222 7.48029 7.73419 7.75659 7.94701 8.11680 8.15364 8.48053 9.11681 9.67445 11.17093 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.003610 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.195100 B = 7755.017968 C = 8736.019274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.033 3.967 10 C -0.096 4.096 11 C 0.079 3.921 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.484 3.516 15 O -0.548 6.548 16 N -0.722 5.722 17 C 0.188 3.812 18 H 0.102 0.898 19 C -0.167 4.167 20 C 0.066 3.934 21 O -0.313 6.313 22 C 0.126 3.874 23 C -0.126 4.126 24 C -0.117 4.117 25 C 0.067 3.933 26 F -0.137 7.137 27 C -0.100 4.100 28 C -0.148 4.148 29 H 0.260 0.740 30 H 0.013 0.987 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.334 0.666 35 H 0.348 0.652 36 H 0.406 0.594 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.068 0.932 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.687 -20.701 -7.265 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.135 4.135 11 C -0.037 4.037 12 H 0.117 0.883 13 N -0.334 5.334 14 C 0.270 3.730 15 O -0.426 6.426 16 N -0.374 5.374 17 C 0.083 3.917 18 H 0.119 0.881 19 C -0.205 4.205 20 C -0.009 4.009 21 O -0.227 6.227 22 C 0.080 3.920 23 C -0.145 4.145 24 C -0.136 4.136 25 C 0.047 3.953 26 F -0.116 7.116 27 C -0.119 4.119 28 C -0.151 4.151 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.163 0.837 36 H 0.242 0.758 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.086 0.914 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.505 -20.329 -6.854 23.887 hybrid contribution 0.782 0.467 0.025 0.911 sum 11.288 -19.862 -6.829 23.844 Atomic orbital electron populations 1.69963 1.05943 1.26534 1.50787 1.24973 0.94795 0.99023 0.95425 0.86720 0.79628 0.83413 0.78594 1.20365 1.21313 1.20267 1.21235 0.92881 0.91303 1.50714 0.93037 1.19001 0.93489 0.89773 0.98193 1.21681 0.98899 0.92148 1.00727 1.21875 0.93476 0.93076 0.95259 0.88271 1.58984 1.26873 1.44294 1.03204 1.22927 0.81901 0.85655 0.82491 1.90665 1.61118 1.53924 1.36874 1.46254 1.45693 1.34604 1.10876 1.19622 0.84949 0.89772 0.97370 0.88055 1.22526 1.00411 1.01108 0.96485 1.22958 0.81740 0.92389 1.03851 1.86012 1.40758 1.52979 1.42971 1.18653 0.93058 0.92256 0.88007 1.20361 0.95112 1.00267 0.98742 1.20955 0.98756 0.98471 0.95400 1.17574 0.94308 0.94420 0.88970 1.91523 1.96014 1.67844 1.56171 1.21294 0.96943 0.96440 0.97173 1.20010 0.95157 1.01715 0.98180 0.93045 0.96885 0.94645 0.92819 0.92819 0.85402 0.83741 0.75829 0.88709 0.89364 0.86763 0.91359 0.84192 0.84083 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.03 0.82 4.86 -27.89 -0.14 0.69 16 10 C -0.10 -1.91 4.78 -26.74 -0.13 -2.04 16 11 C 0.08 1.26 3.15 -68.87 -0.22 1.04 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 13 N -0.81 -13.08 8.44 -5.66 -0.05 -13.13 16 14 C 0.48 7.00 5.63 -10.99 -0.06 6.94 16 15 O -0.55 -9.22 14.19 5.55 0.08 -9.14 16 16 N -0.72 -8.27 4.86 -54.86 -0.27 -8.53 16 17 C 0.19 1.97 2.70 -69.01 -0.19 1.78 16 18 H 0.10 1.15 7.57 -51.93 -0.39 0.76 16 19 C -0.17 -1.16 5.67 -26.48 -0.15 -1.31 16 20 C 0.07 0.43 7.03 37.37 0.26 0.69 16 21 O -0.31 -3.04 10.27 -19.45 -0.20 -3.24 16 22 C 0.13 1.42 6.47 -39.21 -0.25 1.17 16 23 C -0.13 -1.33 9.93 -39.35 -0.39 -1.72 16 24 C -0.12 -1.33 10.02 -39.59 -0.40 -1.73 16 25 C 0.07 0.96 7.30 -39.47 -0.29 0.67 16 26 F -0.14 -2.19 17.27 2.25 0.04 -2.15 16 27 C -0.10 -1.47 9.06 -39.46 -0.36 -1.83 16 28 C -0.15 -1.84 5.56 -104.44 -0.58 -2.42 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.97 7.75 -51.92 -0.40 0.57 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.33 4.63 9.06 -39.29 -0.36 4.28 16 35 H 0.35 5.79 8.58 -39.29 -0.34 5.46 16 36 H 0.41 3.96 8.58 -40.82 -0.35 3.61 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 39 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.15 2.48 4.70 -52.49 -0.25 2.24 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -33.44 359.40 -8.41 -41.85 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.85 Total: 9.79 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -3.29 Total: -11.59 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.42 Total: -47.85 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.12 Total: -12.38 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.44 -8.41 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.962 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds