Wall clock time and date at job start Tue Mar 31 2020 13:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99885 * 2 1 4 4 H 1.48500 * 109.47235 * 240.00123 * 3 2 1 5 5 H 1.48501 * 109.47463 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47109 * 119.99952 * 3 2 1 7 7 C 1.37873 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00426 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47502 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47404 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47153 * 54.99686 * 11 10 9 13 13 N 1.46896 * 109.46848 * 294.99714 * 11 10 9 14 14 C 1.50701 * 109.47212 * 174.99684 * 11 10 9 15 15 O 1.21286 * 119.99821 * 99.99758 * 14 11 10 16 16 N 1.34770 * 120.00293 * 280.00118 * 14 11 10 17 17 C 1.46505 * 120.00284 * 179.97438 * 16 14 11 18 18 H 1.08999 * 109.42839 * 34.91124 * 17 16 14 19 19 C 1.53065 * 109.43328 * 154.77457 * 17 16 14 20 20 C 1.53411 * 108.29933 * 168.27581 * 19 17 16 21 21 O 1.42827 * 108.36761 * 295.28184 * 20 19 17 22 22 C 1.35907 * 117.85617 * 49.20404 * 21 20 19 23 23 C 1.39130 * 118.46321 * 163.02851 * 22 21 20 24 24 C 1.37971 * 120.24785 * 179.60296 * 23 22 21 25 25 C 1.38478 * 119.93105 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.03483 * 180.02562 * 25 24 23 27 27 C 1.38297 * 119.92949 * 0.06759 * 25 24 23 28 28 C 1.38353 * 121.79402 * 342.73771 * 22 21 20 29 29 H 0.97002 * 119.99862 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46946 * 59.99522 * 9 7 2 31 31 H 1.09008 * 109.46848 * 299.99960 * 9 7 2 32 32 H 1.09000 * 109.47017 * 59.99496 * 10 9 7 33 33 H 1.09008 * 109.46970 * 299.99804 * 10 9 7 34 34 H 1.00907 * 110.99811 * 176.04211 * 13 11 10 35 35 H 1.00900 * 111.00550 * 299.99950 * 13 11 10 36 36 H 0.97004 * 119.99647 * 0.02562 * 16 14 11 37 37 H 1.09003 * 109.69686 * 287.97615 * 19 17 16 38 38 H 1.09001 * 109.69894 * 48.57579 * 19 17 16 39 39 H 1.08995 * 109.69040 * 175.56158 * 20 19 17 40 40 H 1.08997 * 109.71305 * 55.01651 * 20 19 17 41 41 H 1.08000 * 119.87171 * 359.59550 * 23 22 21 42 42 H 1.07990 * 120.03166 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.84817 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 1 0.7884 -5.0076 -0.8396 13 7 0.7280 -5.1175 1.2575 14 6 2.4549 -6.1299 -0.1202 15 8 2.7863 -6.7527 0.8664 16 7 2.9583 -6.4598 -1.3260 17 6 3.9062 -7.5705 -1.4452 18 1 3.6449 -8.3487 -0.7281 19 6 3.8434 -8.1438 -2.8630 20 6 5.0336 -9.0931 -3.0519 21 8 6.2368 -8.3273 -2.9741 22 6 6.3804 -7.4752 -1.9251 23 6 7.6531 -6.9980 -1.6280 24 6 7.8399 -6.1248 -0.5762 25 6 6.7574 -5.7207 0.1870 26 9 6.9378 -4.8654 1.2171 27 6 5.4915 -6.1944 -0.1058 28 6 5.3005 -7.0727 -1.1597 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8896 31 1 0.6240 -2.5567 0.8904 32 1 2.8712 -3.6039 0.8922 33 1 2.8725 -3.6047 -0.8878 34 1 0.1636 -5.9540 1.2555 35 1 1.3475 -5.1012 2.0538 36 1 2.6935 -5.9614 -2.1150 37 1 2.9110 -8.6925 -2.9964 38 1 3.9007 -7.3335 -3.5898 39 1 4.9677 -9.5751 -4.0273 40 1 5.0286 -9.8497 -2.2674 41 1 8.4979 -7.3123 -2.2229 42 1 8.8293 -5.7568 -0.3484 43 1 4.6482 -5.8788 0.4905 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424119623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:01 Heat of formation + Delta-G solvation = -127.937534 kcal Electronic energy + Delta-G solvation = -27544.516431 eV Core-core repulsion = 23502.706656 eV Total energy + Delta-G solvation = -4041.809775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.91730 -42.15537 -40.80610 -38.35422 -37.17058 -36.54021 -34.83881 -33.12200 -31.96845 -31.74103 -30.92470 -28.35294 -26.64277 -25.08719 -24.81380 -23.70268 -22.36461 -21.48946 -21.14086 -19.00856 -18.83243 -18.42636 -18.13258 -18.01523 -17.44066 -16.87857 -16.68395 -16.48372 -16.31263 -16.09624 -15.73075 -15.43939 -15.28636 -14.99073 -14.48083 -14.32447 -14.26893 -14.13631 -13.94483 -13.84231 -13.44487 -12.99328 -12.81034 -12.73653 -12.54842 -12.36666 -12.27560 -11.82935 -11.79291 -11.73025 -11.64259 -11.29150 -11.03042 -10.50566 -10.36313 -10.09096 -9.65139 -9.16851 -8.15640 -6.25699 0.00145 0.10106 1.38801 1.41305 1.42376 1.50300 1.97840 2.26565 2.42885 2.51070 3.16539 3.17290 3.42338 3.49573 3.55780 3.62828 3.77850 3.89386 4.02417 4.07370 4.13368 4.27119 4.27517 4.36822 4.47110 4.62285 4.72921 4.78292 4.84684 4.89602 4.94479 5.05815 5.08527 5.14671 5.21453 5.34183 5.54436 5.60967 5.82055 5.96164 6.06001 6.28805 6.31623 6.36730 6.51036 6.92089 7.05173 7.42279 8.95281 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.003610 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.195100 B = 7755.017968 C = 8736.019274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.041 3.959 10 C -0.081 4.081 11 C 0.086 3.914 12 H 0.115 0.885 13 N -0.818 5.818 14 C 0.492 3.508 15 O -0.572 6.572 16 N -0.708 5.708 17 C 0.186 3.814 18 H 0.092 0.908 19 C -0.158 4.158 20 C 0.060 3.940 21 O -0.315 6.315 22 C 0.132 3.868 23 C -0.122 4.122 24 C -0.109 4.109 25 C 0.033 3.967 26 F -0.156 7.156 27 C -0.123 4.123 28 C -0.157 4.157 29 H 0.263 0.737 30 H -0.003 1.003 31 H 0.007 0.993 32 H 0.036 0.964 33 H 0.062 0.938 34 H 0.348 0.652 35 H 0.344 0.656 36 H 0.416 0.584 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.149 0.851 40 H 0.076 0.924 41 H 0.171 0.829 42 H 0.166 0.834 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.113 -22.044 -9.622 26.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.069 0.931 9 C 0.004 3.996 10 C -0.119 4.119 11 C -0.030 4.030 12 H 0.133 0.867 13 N -0.347 5.347 14 C 0.277 3.723 15 O -0.452 6.452 16 N -0.360 5.360 17 C 0.081 3.919 18 H 0.110 0.890 19 C -0.196 4.196 20 C -0.015 4.015 21 O -0.229 6.229 22 C 0.085 3.915 23 C -0.140 4.140 24 C -0.128 4.128 25 C 0.014 3.986 26 F -0.135 7.135 27 C -0.143 4.143 28 C -0.159 4.159 29 H 0.072 0.928 30 H 0.015 0.985 31 H 0.025 0.975 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.254 0.746 37 H 0.138 0.862 38 H 0.110 0.890 39 H 0.166 0.834 40 H 0.094 0.906 41 H 0.188 0.812 42 H 0.183 0.817 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.933 -21.697 -9.252 26.434 hybrid contribution 0.335 0.803 0.710 1.123 sum 12.268 -20.894 -8.542 25.691 Atomic orbital electron populations 1.70085 1.07498 1.27604 1.51560 1.25843 0.95690 1.02825 0.94901 0.85648 0.78436 0.78868 0.78980 1.19155 1.20585 1.19836 1.21675 0.93158 0.92912 1.50664 0.93116 1.18805 0.93773 0.91109 0.95897 1.21368 0.97695 0.92551 1.00304 1.21643 0.93764 0.91753 0.95793 0.86725 1.58954 1.27188 1.45410 1.03153 1.22393 0.81624 0.85132 0.83118 1.90660 1.61818 1.54768 1.37948 1.46107 1.44996 1.34729 1.10127 1.19808 0.83550 0.88816 0.99708 0.89022 1.22539 1.02024 1.01442 0.93576 1.23322 0.80114 0.91951 1.06106 1.86026 1.42400 1.52630 1.41864 1.18783 0.92922 0.91994 0.87763 1.20754 0.95890 0.99111 0.98242 1.21221 0.98870 0.97904 0.94768 1.17950 0.95391 0.95541 0.89757 1.91462 1.96139 1.68668 1.57223 1.21216 0.96415 0.98302 0.98334 1.20159 0.96595 1.01431 0.97736 0.92847 0.98453 0.97505 0.94546 0.91910 0.83816 0.84240 0.74646 0.86208 0.88986 0.83374 0.90581 0.81159 0.81665 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.01 0.32 5.46 84.65 0.46 0.79 16 3 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.04 2.17 4.86 29.85 0.15 2.31 16 10 C -0.08 -3.31 4.78 30.59 0.15 -3.16 16 11 C 0.09 2.79 3.15 44.17 0.14 2.93 16 12 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 13 N -0.82 -27.30 8.44 -171.81 -1.45 -28.75 16 14 C 0.49 14.32 5.63 87.66 0.49 14.82 16 15 O -0.57 -19.76 14.19 -3.05 -0.04 -19.81 16 16 N -0.71 -15.59 4.86 -445.88 -2.17 -17.76 16 17 C 0.19 3.63 2.70 44.29 0.12 3.75 16 18 H 0.09 2.00 7.57 -2.39 -0.02 1.98 16 19 C -0.16 -1.66 5.67 30.75 0.17 -1.49 16 20 C 0.06 0.54 7.03 72.12 0.51 1.05 16 21 O -0.32 -5.02 10.27 -92.51 -0.95 -5.97 16 22 C 0.13 2.68 6.47 22.51 0.15 2.82 16 23 C -0.12 -2.25 9.93 22.42 0.22 -2.03 16 24 C -0.11 -2.35 10.02 22.26 0.22 -2.12 16 25 C 0.03 0.97 7.30 22.34 0.16 1.13 16 26 F -0.16 -5.26 17.27 44.97 0.78 -4.48 16 27 C -0.12 -3.76 9.06 22.35 0.20 -3.56 16 28 C -0.16 -3.76 5.56 -19.75 -0.11 -3.87 16 29 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.01 0.38 7.75 -2.38 -0.02 0.36 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.35 9.75 9.06 -89.69 -0.81 8.93 16 35 H 0.34 11.98 8.58 -89.69 -0.77 11.21 16 36 H 0.42 7.47 8.58 -92.71 -0.80 6.67 16 37 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 0.96 8.11 -2.39 -0.02 0.94 16 39 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.17 2.62 8.06 -2.92 -0.02 2.60 16 43 H 0.12 4.28 4.70 -2.91 -0.01 4.26 16 Total: -1.00 -74.91 359.40 0.44 -74.47 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -1.30 Total: 29.63 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 3.27 Total: -18.02 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -3.33 Total: -103.04 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.99 Total: -25.78 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -74.91 0.44 -74.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.468 kcal (2) G-P(sol) polarization free energy of solvation -74.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds