Wall clock time and date at job start Tue Mar 31 2020 13:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00140 * 2 1 4 4 H 1.48493 * 109.47079 * 240.00234 * 3 2 1 5 5 H 1.48504 * 109.46852 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46763 * 120.00128 * 3 2 1 7 7 C 1.37877 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47244 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47619 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46392 * 304.99890 * 11 10 9 13 13 N 1.46904 * 109.46970 * 64.99532 * 11 10 9 14 14 C 1.50694 * 109.47675 * 184.99936 * 11 10 9 15 15 O 1.21281 * 119.99663 * 260.00199 * 14 11 10 16 16 N 1.34773 * 119.99987 * 79.99354 * 14 11 10 17 17 C 1.46502 * 119.99833 * 180.02562 * 16 14 11 18 18 H 1.08997 * 109.43831 * 324.91834 * 17 16 14 19 19 C 1.53072 * 109.43648 * 205.00025 * 17 16 14 20 20 C 1.53410 * 108.29296 * 191.74302 * 19 17 16 21 21 O 1.42825 * 108.36904 * 64.70704 * 20 19 17 22 22 C 1.35903 * 117.86463 * 310.87514 * 21 20 19 23 23 C 1.39337 * 118.48886 * 196.95127 * 22 21 20 24 24 F 1.35101 * 119.91665 * 0.26966 * 23 22 21 25 25 C 1.38135 * 120.17781 * 180.24306 * 23 22 21 26 26 C 1.38307 * 119.92663 * 0.05257 * 25 23 22 27 27 C 1.38084 * 119.99803 * 359.93922 * 26 25 23 28 28 C 1.38279 * 121.81574 * 17.14829 * 22 21 20 29 29 H 0.97006 * 119.99779 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46935 * 60.00252 * 9 7 2 31 31 H 1.09002 * 109.47056 * 300.00328 * 9 7 2 32 32 H 1.09000 * 109.47320 * 60.00033 * 10 9 7 33 33 H 1.09002 * 109.46991 * 299.99914 * 10 9 7 34 34 H 1.00898 * 110.99877 * 60.00286 * 13 11 10 35 35 H 1.00902 * 110.99779 * 183.96043 * 13 11 10 36 36 H 0.97000 * 120.00159 * 0.02562 * 16 14 11 37 37 H 1.09006 * 109.70029 * 72.04475 * 19 17 16 38 38 H 1.08993 * 109.70166 * 311.44669 * 19 17 16 39 39 H 1.08996 * 109.68278 * 304.98839 * 20 19 17 40 40 H 1.09002 * 109.68599 * 184.42465 * 20 19 17 41 41 H 1.08003 * 120.04226 * 179.77766 * 25 23 22 42 42 H 1.07999 * 120.00683 * 179.91253 * 26 25 23 43 43 H 1.07998 * 119.82027 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7878 -5.0072 0.8405 13 7 0.7288 -5.1181 -1.2567 14 6 2.4547 -6.1299 0.1226 15 8 2.7868 -6.7531 -0.8634 16 7 2.9572 -6.4593 1.3290 17 6 3.9050 -7.5699 1.4492 18 1 3.6425 -8.3498 0.7345 19 6 3.8453 -8.1390 2.8690 20 6 5.0360 -9.0878 3.0579 21 8 6.2390 -8.3224 2.9747 22 6 6.3796 -7.4723 1.9238 23 6 7.6530 -6.9945 1.6212 24 9 8.7126 -7.3832 2.3638 25 6 7.8352 -6.1248 0.5636 26 6 6.7507 -5.7261 -0.1966 27 6 5.4878 -6.1984 0.1013 28 6 5.2986 -7.0726 1.1597 29 1 -0.4850 0.8401 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 2.8718 -3.6044 0.8894 33 1 2.8718 -3.6043 -0.8905 34 1 1.3488 -5.1021 -2.0525 35 1 0.1644 -5.9545 -1.2547 36 1 2.6914 -5.9610 2.1176 37 1 2.9133 -8.6873 3.0062 38 1 3.9043 -7.3267 3.5933 39 1 5.0286 -9.8464 2.2753 40 1 4.9724 -9.5668 4.0349 41 1 8.8227 -5.7529 0.3332 42 1 6.8915 -5.0451 -1.0229 43 1 4.6430 -5.8849 -0.4939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424122610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:39 Heat of formation + Delta-G solvation = -102.868673 kcal Electronic energy + Delta-G solvation = -27417.213866 eV Core-core repulsion = 23376.491158 eV Total energy + Delta-G solvation = -4040.722708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.89743 -41.23894 -39.68840 -37.71053 -35.98844 -35.16188 -32.84682 -32.16105 -30.94805 -30.18119 -29.99215 -26.90131 -25.44048 -24.26154 -23.50946 -22.43158 -20.78836 -20.68336 -19.91089 -18.21616 -17.78061 -17.09096 -17.03705 -16.54116 -16.16620 -15.84432 -15.65926 -15.44382 -15.11949 -14.83054 -14.61028 -14.48384 -14.15946 -13.77495 -13.53334 -13.33507 -13.15343 -12.68333 -12.37201 -12.32403 -12.06455 -11.82353 -11.60010 -11.50723 -11.21364 -11.09372 -10.89967 -10.72807 -10.61366 -10.23538 -9.85423 -9.42517 -9.34399 -9.04818 -8.93391 -8.42270 -8.38892 -8.25538 -5.96389 -3.98762 0.91165 1.06190 2.57133 2.81538 3.02741 3.34574 3.39300 3.41569 3.46243 3.96120 4.14167 4.33626 4.38538 4.47798 4.64370 4.67131 4.80251 4.91291 4.98402 5.05297 5.11562 5.16010 5.23158 5.39091 5.43091 5.45745 5.56007 5.69658 5.74424 5.93926 6.10734 6.19185 6.35224 6.38118 6.46913 6.57132 7.02592 7.05634 7.25541 7.46283 7.71020 7.73030 7.91856 8.09154 8.13709 8.44899 9.08880 9.64665 11.14432 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.003362 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.360309 B = 8325.271846 C = 9473.135212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.078 3.922 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.485 3.515 15 O -0.548 6.548 16 N -0.721 5.721 17 C 0.189 3.811 18 H 0.102 0.898 19 C -0.168 4.168 20 C 0.066 3.934 21 O -0.309 6.309 22 C 0.105 3.895 23 C 0.063 3.937 24 F -0.135 7.135 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.074 4.074 28 C -0.151 4.151 29 H 0.260 0.740 30 H 0.035 0.965 31 H 0.013 0.987 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.348 0.652 35 H 0.334 0.666 36 H 0.406 0.594 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.632 -19.335 5.300 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.117 0.883 13 N -0.334 5.334 14 C 0.271 3.729 15 O -0.426 6.426 16 N -0.373 5.373 17 C 0.084 3.916 18 H 0.120 0.880 19 C -0.206 4.206 20 C -0.009 4.009 21 O -0.223 6.223 22 C 0.058 3.942 23 C 0.043 3.957 24 F -0.114 7.114 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.092 4.092 28 C -0.154 4.154 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.242 0.758 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.487 -19.015 4.966 21.823 hybrid contribution 0.959 0.225 0.343 1.043 sum 10.446 -18.790 5.308 22.144 Atomic orbital electron populations 1.69962 1.05955 1.26563 1.50692 1.24979 0.94794 0.99036 0.95417 0.86721 0.79633 0.83438 0.78559 1.20291 1.21315 1.20358 1.21227 0.92851 0.91297 1.50819 0.93034 1.19004 0.93517 0.89785 0.98202 1.21673 0.98891 0.92117 1.00700 1.21879 0.93516 0.93103 0.95243 0.88304 1.58985 1.26860 1.44336 1.03187 1.22898 0.81866 0.85644 0.82476 1.90660 1.61110 1.53913 1.36924 1.46248 1.45609 1.34593 1.10875 1.19597 0.84961 0.89761 0.97280 0.88000 1.22535 1.00349 1.01149 0.96593 1.22987 0.81605 0.92373 1.03938 1.86051 1.40917 1.52981 1.42392 1.18609 0.92053 0.93943 0.89556 1.17092 0.81432 1.02474 0.94711 1.91483 1.54359 1.89966 1.75559 1.21037 1.00976 0.97323 0.94353 1.21000 0.91744 1.00907 1.00498 1.21407 0.98379 0.94322 0.95115 1.20086 0.94382 1.02306 0.98588 0.93021 0.94653 0.96906 0.92769 0.92819 0.83772 0.85385 0.75828 0.88652 0.89360 0.91297 0.86647 0.84096 0.84564 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.03 0.79 4.86 -27.89 -0.14 0.65 16 10 C -0.10 -1.81 4.78 -26.74 -0.13 -1.94 16 11 C 0.08 1.20 3.15 -68.86 -0.22 0.98 16 12 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 13 N -0.81 -12.54 8.44 -5.65 -0.05 -12.59 16 14 C 0.48 6.66 5.63 -10.99 -0.06 6.60 16 15 O -0.55 -8.74 14.16 5.56 0.08 -8.66 16 16 N -0.72 -7.96 4.86 -54.86 -0.27 -8.23 16 17 C 0.19 1.97 2.70 -69.01 -0.19 1.78 16 18 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 19 C -0.17 -1.23 5.67 -26.48 -0.15 -1.38 16 20 C 0.07 0.49 7.03 37.37 0.26 0.75 16 21 O -0.31 -3.56 10.09 -19.43 -0.20 -3.75 16 22 C 0.10 1.32 6.48 -39.16 -0.25 1.07 16 23 C 0.06 0.81 7.30 -39.21 -0.29 0.52 16 24 F -0.14 -1.82 17.05 2.25 0.04 -1.79 16 25 C -0.12 -1.35 10.02 -39.59 -0.40 -1.75 16 26 C -0.12 -1.48 10.04 -39.61 -0.40 -1.88 16 27 C -0.07 -0.99 9.07 -39.51 -0.36 -1.35 16 28 C -0.15 -1.87 5.56 -104.45 -0.58 -2.45 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.35 5.49 8.58 -39.29 -0.34 5.15 16 35 H 0.33 4.46 9.06 -39.29 -0.36 4.10 16 36 H 0.41 3.84 8.58 -40.82 -0.35 3.49 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 43 H 0.14 2.12 4.67 -52.49 -0.25 1.87 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -32.70 359.09 -8.42 -41.12 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.85 Total: 9.40 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -3.30 Total: -11.59 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.42 Total: -46.60 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.12 Total: -12.41 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.70 -8.42 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.751 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds