Wall clock time and date at job start Tue Mar 31 2020 13:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00140 * 2 1 4 4 H 1.48493 * 109.47079 * 240.00234 * 3 2 1 5 5 H 1.48504 * 109.46852 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46763 * 120.00128 * 3 2 1 7 7 C 1.37877 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47244 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47619 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46392 * 304.99890 * 11 10 9 13 13 N 1.46904 * 109.46970 * 64.99532 * 11 10 9 14 14 C 1.50694 * 109.47675 * 184.99936 * 11 10 9 15 15 O 1.21281 * 119.99663 * 260.00199 * 14 11 10 16 16 N 1.34773 * 119.99987 * 79.99354 * 14 11 10 17 17 C 1.46502 * 119.99833 * 180.02562 * 16 14 11 18 18 H 1.08997 * 109.43831 * 324.91834 * 17 16 14 19 19 C 1.53072 * 109.43648 * 205.00025 * 17 16 14 20 20 C 1.53410 * 108.29296 * 191.74302 * 19 17 16 21 21 O 1.42825 * 108.36904 * 64.70704 * 20 19 17 22 22 C 1.35903 * 117.86463 * 310.87514 * 21 20 19 23 23 C 1.39337 * 118.48886 * 196.95127 * 22 21 20 24 24 F 1.35101 * 119.91665 * 0.26966 * 23 22 21 25 25 C 1.38135 * 120.17781 * 180.24306 * 23 22 21 26 26 C 1.38307 * 119.92663 * 0.05257 * 25 23 22 27 27 C 1.38084 * 119.99803 * 359.93922 * 26 25 23 28 28 C 1.38279 * 121.81574 * 17.14829 * 22 21 20 29 29 H 0.97006 * 119.99779 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46935 * 60.00252 * 9 7 2 31 31 H 1.09002 * 109.47056 * 300.00328 * 9 7 2 32 32 H 1.09000 * 109.47320 * 60.00033 * 10 9 7 33 33 H 1.09002 * 109.46991 * 299.99914 * 10 9 7 34 34 H 1.00898 * 110.99877 * 60.00286 * 13 11 10 35 35 H 1.00902 * 110.99779 * 183.96043 * 13 11 10 36 36 H 0.97000 * 120.00159 * 0.02562 * 16 14 11 37 37 H 1.09006 * 109.70029 * 72.04475 * 19 17 16 38 38 H 1.08993 * 109.70166 * 311.44669 * 19 17 16 39 39 H 1.08996 * 109.68278 * 304.98839 * 20 19 17 40 40 H 1.09002 * 109.68599 * 184.42465 * 20 19 17 41 41 H 1.08003 * 120.04226 * 179.77766 * 25 23 22 42 42 H 1.07999 * 120.00683 * 179.91253 * 26 25 23 43 43 H 1.07998 * 119.82027 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7878 -5.0072 0.8405 13 7 0.7288 -5.1181 -1.2567 14 6 2.4547 -6.1299 0.1226 15 8 2.7868 -6.7531 -0.8634 16 7 2.9572 -6.4593 1.3290 17 6 3.9050 -7.5699 1.4492 18 1 3.6425 -8.3498 0.7345 19 6 3.8453 -8.1390 2.8690 20 6 5.0360 -9.0878 3.0579 21 8 6.2390 -8.3224 2.9747 22 6 6.3796 -7.4723 1.9238 23 6 7.6530 -6.9945 1.6212 24 9 8.7126 -7.3832 2.3638 25 6 7.8352 -6.1248 0.5636 26 6 6.7507 -5.7261 -0.1966 27 6 5.4878 -6.1984 0.1013 28 6 5.2986 -7.0726 1.1597 29 1 -0.4850 0.8401 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 2.8718 -3.6044 0.8894 33 1 2.8718 -3.6043 -0.8905 34 1 1.3488 -5.1021 -2.0525 35 1 0.1644 -5.9545 -1.2547 36 1 2.6914 -5.9610 2.1176 37 1 2.9133 -8.6873 3.0062 38 1 3.9043 -7.3267 3.5933 39 1 5.0286 -9.8464 2.2753 40 1 4.9724 -9.5668 4.0349 41 1 8.8227 -5.7529 0.3332 42 1 6.8915 -5.0451 -1.0229 43 1 4.6430 -5.8849 -0.4939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424122610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:38 Heat of formation + Delta-G solvation = -125.855733 kcal Electronic energy + Delta-G solvation = -27418.210660 eV Core-core repulsion = 23376.491158 eV Total energy + Delta-G solvation = -4041.719502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.88920 -42.13397 -40.74907 -38.57681 -37.09754 -36.47804 -34.79942 -33.01744 -31.91268 -31.79538 -30.93608 -28.33556 -26.67222 -25.15834 -24.87984 -23.46362 -22.31609 -21.53651 -21.12643 -19.10788 -18.84721 -18.36710 -18.02895 -17.84367 -17.44901 -16.89709 -16.81532 -16.55630 -16.41848 -15.97056 -15.64953 -15.53801 -15.38137 -14.94661 -14.72419 -14.27381 -14.19579 -13.95730 -13.80927 -13.47642 -13.40641 -13.14122 -12.77482 -12.68987 -12.52217 -12.34557 -12.23195 -11.89252 -11.87926 -11.73511 -11.62784 -11.24367 -10.98567 -10.47428 -10.32847 -9.87378 -9.59437 -9.31230 -8.12691 -6.22455 -0.02199 0.12056 1.42168 1.44695 1.45454 1.52548 1.98117 2.15298 2.45247 2.51943 3.05864 3.20692 3.41601 3.54592 3.58445 3.66437 3.80036 3.93977 4.01192 4.13174 4.15618 4.22645 4.32973 4.33615 4.43387 4.57021 4.75446 4.79729 4.83817 4.91311 4.95978 4.99828 5.16643 5.26263 5.28317 5.42431 5.58704 5.59515 5.86427 6.00622 6.11596 6.22477 6.32001 6.41207 6.55624 6.96403 7.08736 7.45663 8.98227 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.003362 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.360309 B = 8325.271846 C = 9473.135212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.040 3.960 10 C -0.081 4.081 11 C 0.086 3.914 12 H 0.111 0.889 13 N -0.819 5.819 14 C 0.494 3.506 15 O -0.569 6.569 16 N -0.707 5.707 17 C 0.189 3.811 18 H 0.096 0.904 19 C -0.159 4.159 20 C 0.059 3.941 21 O -0.324 6.324 22 C 0.103 3.897 23 C 0.042 3.958 24 F -0.141 7.141 25 C -0.112 4.112 26 C -0.130 4.130 27 C -0.092 4.092 28 C -0.157 4.157 29 H 0.262 0.738 30 H 0.006 0.994 31 H -0.007 1.007 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.346 0.654 35 H 0.347 0.653 36 H 0.416 0.584 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.146 0.854 41 H 0.165 0.835 42 H 0.150 0.850 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.552 -20.018 6.426 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.119 4.119 11 C -0.030 4.030 12 H 0.129 0.871 13 N -0.348 5.348 14 C 0.280 3.720 15 O -0.448 6.448 16 N -0.359 5.359 17 C 0.084 3.916 18 H 0.113 0.887 19 C -0.197 4.197 20 C -0.016 4.016 21 O -0.238 6.238 22 C 0.056 3.944 23 C 0.023 3.977 24 F -0.120 7.120 25 C -0.131 4.131 26 C -0.148 4.148 27 C -0.111 4.111 28 C -0.160 4.160 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.012 0.988 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.253 0.747 37 H 0.141 0.859 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.164 0.836 41 H 0.182 0.818 42 H 0.168 0.832 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.413 -19.721 6.126 23.128 hybrid contribution 0.664 0.387 0.002 0.768 sum 11.076 -19.334 6.128 23.109 Atomic orbital electron populations 1.70092 1.07577 1.27513 1.51780 1.25855 0.95645 1.02867 0.95049 0.85653 0.78396 0.78883 0.79018 1.19561 1.20996 1.19251 1.21705 0.93325 0.92767 1.50300 0.92675 1.18818 0.93880 0.91297 0.95761 1.21371 0.97667 0.92128 1.00725 1.21643 0.93766 0.91936 0.95663 0.87119 1.58955 1.27228 1.45411 1.03210 1.22356 0.81526 0.85108 0.82994 1.90659 1.61704 1.54619 1.37866 1.46101 1.44894 1.34627 1.10280 1.19728 0.83585 0.89000 0.99301 0.88656 1.22532 1.01654 1.01346 0.94128 1.23356 0.80098 0.92085 1.06012 1.86041 1.42993 1.52997 1.41810 1.18685 0.91947 0.94074 0.89705 1.17403 0.81618 1.03331 0.95379 1.91460 1.54629 1.90131 1.75804 1.21267 1.01886 0.96461 0.93465 1.21192 0.91480 1.01106 1.00998 1.21427 0.98475 0.95459 0.95708 1.20225 0.95350 1.02145 0.98237 0.92968 0.97536 0.98816 0.91746 0.93734 0.84053 0.83911 0.74694 0.85944 0.89162 0.90493 0.83622 0.81780 0.83245 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.04 1.99 4.86 29.85 0.15 2.14 16 10 C -0.08 -3.05 4.78 30.59 0.15 -2.91 16 11 C 0.09 2.58 3.15 44.17 0.14 2.71 16 12 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 13 N -0.82 -25.50 8.44 -171.80 -1.45 -26.95 16 14 C 0.49 13.15 5.63 87.66 0.49 13.65 16 15 O -0.57 -17.87 14.16 -3.03 -0.04 -17.91 16 16 N -0.71 -14.52 4.86 -445.89 -2.17 -16.68 16 17 C 0.19 3.61 2.70 44.29 0.12 3.73 16 18 H 0.10 2.00 7.58 -2.39 -0.02 1.98 16 19 C -0.16 -1.86 5.67 30.76 0.17 -1.69 16 20 C 0.06 0.71 7.03 72.12 0.51 1.22 16 21 O -0.32 -6.90 10.09 -92.45 -0.93 -7.83 16 22 C 0.10 2.49 6.48 22.54 0.15 2.63 16 23 C 0.04 1.06 7.30 22.51 0.16 1.23 16 24 F -0.14 -3.72 17.05 44.97 0.77 -2.95 16 25 C -0.11 -2.45 10.02 22.26 0.22 -2.22 16 26 C -0.13 -3.02 10.04 22.25 0.22 -2.80 16 27 C -0.09 -2.44 9.07 22.31 0.20 -2.24 16 28 C -0.16 -3.74 5.56 -19.75 -0.11 -3.85 16 29 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 30 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.35 11.03 8.58 -89.70 -0.77 10.26 16 35 H 0.35 9.11 9.06 -89.69 -0.81 8.30 16 36 H 0.42 7.01 8.58 -92.71 -0.80 6.22 16 37 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.09 1.08 8.11 -2.39 -0.02 1.06 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 42 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.13 3.75 4.67 -2.91 -0.01 3.73 16 Total: -1.00 -71.14 359.09 0.45 -70.69 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -1.30 Total: 29.08 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 3.27 Total: -17.71 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -3.33 Total: -99.33 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.98 Total: -25.74 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.77 Total: -2.95 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.14 0.45 -70.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.166 kcal (2) G-P(sol) polarization free energy of solvation -71.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds