Wall clock time and date at job start Tue Mar 31 2020 13:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99349 * 2 1 4 4 H 1.48497 * 109.47190 * 269.99984 * 3 2 1 5 5 H 1.48502 * 109.47178 * 30.00521 * 3 2 1 6 6 H 1.48498 * 109.46759 * 150.00102 * 3 2 1 7 7 C 1.37873 * 120.00640 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99731 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00426 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47502 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47404 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47153 * 54.99686 * 11 10 9 13 13 N 1.46896 * 109.46848 * 294.99714 * 11 10 9 14 14 C 1.50701 * 109.47212 * 174.99684 * 11 10 9 15 15 O 1.21286 * 119.99821 * 99.99758 * 14 11 10 16 16 N 1.34770 * 120.00293 * 280.00118 * 14 11 10 17 17 C 1.46505 * 120.00284 * 179.97438 * 16 14 11 18 18 H 1.09001 * 109.43060 * 324.99673 * 17 16 14 19 19 C 1.53065 * 109.43551 * 205.08970 * 17 16 14 20 20 C 1.53380 * 108.32013 * 191.69992 * 19 17 16 21 21 O 1.42840 * 108.32598 * 64.75097 * 20 19 17 22 22 C 1.35901 * 117.84637 * 310.78362 * 21 20 19 23 23 C 1.39342 * 118.48858 * 197.01271 * 22 21 20 24 24 F 1.35105 * 119.91068 * 0.43125 * 23 22 21 25 25 C 1.38129 * 120.17471 * 180.45347 * 23 22 21 26 26 C 1.38303 * 119.92712 * 359.97438 * 25 23 22 27 27 C 1.38079 * 120.00532 * 359.91637 * 26 25 23 28 28 C 1.38278 * 121.81613 * 17.29208 * 22 21 20 29 29 H 0.96993 * 120.00296 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46946 * 59.99522 * 9 7 2 31 31 H 1.09008 * 109.46848 * 299.99960 * 9 7 2 32 32 H 1.09000 * 109.47017 * 59.99496 * 10 9 7 33 33 H 1.09008 * 109.46970 * 299.99804 * 10 9 7 34 34 H 1.00900 * 111.00550 * 299.99950 * 13 11 10 35 35 H 1.00896 * 111.00310 * 63.95536 * 13 11 10 36 36 H 0.97004 * 119.99647 * 0.02562 * 16 14 11 37 37 H 1.09010 * 109.69448 * 311.44691 * 19 17 16 38 38 H 1.09000 * 109.69770 * 72.03439 * 19 17 16 39 39 H 1.09003 * 109.71327 * 305.04435 * 20 19 17 40 40 H 1.08995 * 109.69752 * 184.45172 * 20 19 17 41 41 H 1.07995 * 120.03846 * 179.97438 * 25 23 22 42 42 H 1.08001 * 119.99899 * 179.90892 * 26 25 23 43 43 H 1.07989 * 119.82447 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5465 1.4403 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0218 -2.6363 -0.0014 11 6 5.5517 -2.6362 -0.0014 12 1 5.9151 -2.0475 0.8409 13 7 6.0413 -2.0497 -1.2561 14 6 6.0542 -4.0517 0.1211 15 8 6.4282 -4.6499 -0.8654 16 7 6.0878 -4.6529 1.3268 17 6 6.5757 -6.0291 1.4458 18 1 6.2866 -6.5943 0.5598 19 6 5.9632 -6.6810 2.6879 20 6 6.7030 -7.9976 2.9559 21 8 8.0596 -7.6921 3.2825 22 6 8.7345 -6.8443 2.4624 23 6 10.1254 -6.8106 2.5404 24 9 10.7710 -7.6165 3.4117 25 6 10.8457 -5.9551 1.7297 26 6 10.1851 -5.1300 0.8377 27 6 8.8071 -5.1632 0.7570 28 6 8.0785 -6.0199 1.5668 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.6806 0.8905 31 1 3.8753 -0.6794 -0.8895 32 1 3.6587 -3.1491 -0.8920 33 1 3.6581 -3.1511 0.8880 34 1 5.7178 -2.5778 -2.0527 35 1 5.7718 -1.0803 -1.3315 36 1 5.7882 -4.1745 2.1158 37 1 6.0741 -6.0158 3.5444 38 1 4.9065 -6.8832 2.5135 39 1 6.6722 -8.6246 2.0647 40 1 6.2334 -8.5199 3.7893 41 1 11.9236 -5.9305 1.7923 42 1 10.7471 -4.4596 0.2044 43 1 8.2943 -4.5180 0.0592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424122612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:41 Heat of formation + Delta-G solvation = -100.473698 kcal Electronic energy + Delta-G solvation = -27160.040066 eV Core-core repulsion = 23119.421212 eV Total energy + Delta-G solvation = -4040.618854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.95147 -41.24120 -39.63298 -37.75772 -36.13845 -35.38904 -32.87482 -32.15998 -30.99211 -30.39055 -30.06877 -27.26445 -25.58755 -24.27828 -23.60130 -22.47644 -20.71772 -20.69673 -19.96927 -18.26999 -17.84977 -17.32182 -17.05927 -16.70472 -16.45528 -15.90474 -15.64600 -15.18758 -14.93185 -14.86331 -14.57308 -14.37418 -14.24306 -14.01504 -13.43340 -13.28959 -13.20552 -12.96084 -12.72171 -12.67623 -12.32823 -12.04632 -11.78310 -11.55751 -11.39199 -11.20636 -11.10661 -11.03601 -10.43281 -10.18254 -9.92459 -9.57178 -9.37355 -9.31723 -8.97336 -8.67137 -8.45155 -8.41756 -6.16603 -4.16637 0.85314 1.00272 2.65421 2.78933 2.97600 3.21240 3.29874 3.30431 3.40551 3.92776 4.15331 4.33068 4.34004 4.37529 4.62064 4.68354 4.80286 4.94143 4.95584 5.02590 5.07564 5.14398 5.16300 5.24722 5.35714 5.46191 5.50668 5.59200 5.65093 5.87628 6.04210 6.07492 6.16800 6.24337 6.33643 6.42321 6.57963 7.01661 7.02282 7.14856 7.21061 7.45749 7.60587 7.69280 8.20937 8.38950 8.86946 9.44497 10.96566 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.002759 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.076603 B =10146.254029 C =10797.990630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.129 4.129 11 C 0.071 3.929 12 H 0.098 0.902 13 N -0.830 5.830 14 C 0.528 3.472 15 O -0.531 6.531 16 N -0.724 5.724 17 C 0.192 3.808 18 H 0.105 0.895 19 C -0.169 4.169 20 C 0.066 3.934 21 O -0.310 6.310 22 C 0.107 3.893 23 C 0.062 3.938 24 F -0.135 7.135 25 C -0.120 4.120 26 C -0.126 4.126 27 C -0.075 4.075 28 C -0.151 4.151 29 H 0.264 0.736 30 H 0.018 0.982 31 H 0.012 0.988 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.349 0.651 35 H 0.352 0.648 36 H 0.405 0.595 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.159 -13.365 5.851 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.169 4.169 11 C -0.044 4.044 12 H 0.116 0.884 13 N -0.363 5.363 14 C 0.315 3.685 15 O -0.406 6.406 16 N -0.377 5.377 17 C 0.087 3.913 18 H 0.122 0.878 19 C -0.207 4.207 20 C -0.009 4.009 21 O -0.224 6.224 22 C 0.060 3.940 23 C 0.042 3.958 24 F -0.114 7.114 25 C -0.139 4.139 26 C -0.144 4.144 27 C -0.093 4.093 28 C -0.153 4.153 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.240 0.760 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.135 0.865 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 19.069 -13.955 5.603 24.285 hybrid contribution -0.951 1.232 0.217 1.571 sum 18.118 -12.723 5.820 22.891 Atomic orbital electron populations 1.69905 1.06358 1.27082 1.50522 1.25045 0.94757 0.99254 0.94369 0.86768 0.80305 0.83528 0.78600 1.20192 1.21307 1.18971 1.21052 0.89202 0.94528 1.51528 0.91085 1.19570 0.97583 0.91282 0.96329 1.22203 0.91082 1.01221 1.02386 1.21526 0.95804 0.91345 0.95707 0.88409 1.58739 1.66679 1.07537 1.03307 1.20886 0.76259 0.88858 0.82454 1.90661 1.47108 1.65942 1.36909 1.46038 1.66865 1.14274 1.10531 1.19568 0.88020 0.84300 0.99415 0.87752 1.22539 1.01809 0.98000 0.98355 1.23014 0.79027 0.95980 1.02909 1.86054 1.26612 1.61131 1.48575 1.18637 0.89705 0.92835 0.92820 1.17102 0.87216 0.96429 0.95055 1.91487 1.81134 1.71430 1.67321 1.21022 1.00660 0.96022 0.96158 1.20966 0.94400 0.99849 0.99225 1.21460 0.93921 0.96998 0.96954 1.20138 0.96607 0.99301 0.99242 0.92577 0.96338 0.97031 0.92003 0.91866 0.83782 0.83342 0.75961 0.89414 0.88344 0.91151 0.86546 0.84199 0.84725 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.53 -14.14 9.66 -34.44 -0.33 -14.47 16 8 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 9 C -0.01 -0.22 3.81 -27.89 -0.11 -0.32 16 10 C -0.13 -2.25 4.78 -26.74 -0.13 -2.38 16 11 C 0.07 1.03 3.21 -68.87 -0.22 0.81 16 12 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 13 N -0.83 -12.14 8.93 -5.66 -0.05 -12.19 16 14 C 0.53 7.35 5.64 -10.99 -0.06 7.29 16 15 O -0.53 -8.75 14.18 5.55 0.08 -8.67 16 16 N -0.72 -7.96 4.86 -54.86 -0.27 -8.23 16 17 C 0.19 2.00 2.70 -69.01 -0.19 1.81 16 18 H 0.10 1.21 7.58 -51.93 -0.39 0.81 16 19 C -0.17 -1.29 5.67 -26.50 -0.15 -1.44 16 20 C 0.07 0.49 7.03 37.35 0.26 0.76 16 21 O -0.31 -3.43 10.09 -19.43 -0.20 -3.63 16 22 C 0.11 1.27 6.48 -39.16 -0.25 1.01 16 23 C 0.06 0.74 7.30 -39.21 -0.29 0.45 16 24 F -0.14 -1.71 17.05 2.25 0.04 -1.67 16 25 C -0.12 -1.21 10.02 -39.60 -0.40 -1.60 16 26 C -0.13 -1.31 10.04 -39.62 -0.40 -1.71 16 27 C -0.08 -0.91 9.07 -39.51 -0.36 -1.27 16 28 C -0.15 -1.75 5.56 -104.45 -0.58 -2.33 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 31 H 0.01 0.24 6.29 -51.92 -0.33 -0.09 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.35 5.22 8.58 -39.29 -0.34 4.89 16 35 H 0.35 5.04 7.55 -39.29 -0.30 4.74 16 36 H 0.41 3.71 8.58 -40.82 -0.35 3.36 16 37 H 0.09 0.65 8.11 -51.92 -0.42 0.23 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.15 1.99 4.69 -52.49 -0.25 1.75 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -32.21 353.56 -7.97 -40.18 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.71 Total: 10.66 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -3.29 Total: -11.60 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.46 Total: -46.54 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.12 Total: -12.30 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.21 -7.97 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.293 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds