Wall clock time and date at job start Tue Mar 31 2020 13:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99349 * 2 1 4 4 H 1.48497 * 109.47190 * 269.99984 * 3 2 1 5 5 H 1.48502 * 109.47178 * 30.00521 * 3 2 1 6 6 H 1.48498 * 109.46759 * 150.00102 * 3 2 1 7 7 C 1.37873 * 120.00640 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99731 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00426 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47502 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47404 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47153 * 54.99686 * 11 10 9 13 13 N 1.46896 * 109.46848 * 294.99714 * 11 10 9 14 14 C 1.50701 * 109.47212 * 174.99684 * 11 10 9 15 15 O 1.21286 * 119.99821 * 99.99758 * 14 11 10 16 16 N 1.34770 * 120.00293 * 280.00118 * 14 11 10 17 17 C 1.46505 * 120.00284 * 179.97438 * 16 14 11 18 18 H 1.09001 * 109.43060 * 324.99673 * 17 16 14 19 19 C 1.53065 * 109.43551 * 205.08970 * 17 16 14 20 20 C 1.53380 * 108.32013 * 191.69992 * 19 17 16 21 21 O 1.42840 * 108.32598 * 64.75097 * 20 19 17 22 22 C 1.35901 * 117.84637 * 310.78362 * 21 20 19 23 23 C 1.39342 * 118.48858 * 197.01271 * 22 21 20 24 24 F 1.35105 * 119.91068 * 0.43125 * 23 22 21 25 25 C 1.38129 * 120.17471 * 180.45347 * 23 22 21 26 26 C 1.38303 * 119.92712 * 359.97438 * 25 23 22 27 27 C 1.38079 * 120.00532 * 359.91637 * 26 25 23 28 28 C 1.38278 * 121.81613 * 17.29208 * 22 21 20 29 29 H 0.96993 * 120.00296 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46946 * 59.99522 * 9 7 2 31 31 H 1.09008 * 109.46848 * 299.99960 * 9 7 2 32 32 H 1.09000 * 109.47017 * 59.99496 * 10 9 7 33 33 H 1.09008 * 109.46970 * 299.99804 * 10 9 7 34 34 H 1.00900 * 111.00550 * 299.99950 * 13 11 10 35 35 H 1.00896 * 111.00310 * 63.95536 * 13 11 10 36 36 H 0.97004 * 119.99647 * 0.02562 * 16 14 11 37 37 H 1.09010 * 109.69448 * 311.44691 * 19 17 16 38 38 H 1.09000 * 109.69770 * 72.03439 * 19 17 16 39 39 H 1.09003 * 109.71327 * 305.04435 * 20 19 17 40 40 H 1.08995 * 109.69752 * 184.45172 * 20 19 17 41 41 H 1.07995 * 120.03846 * 179.97438 * 25 23 22 42 42 H 1.08001 * 119.99899 * 179.90892 * 26 25 23 43 43 H 1.07989 * 119.82447 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5465 1.4403 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0218 -2.6363 -0.0014 11 6 5.5517 -2.6362 -0.0014 12 1 5.9151 -2.0475 0.8409 13 7 6.0413 -2.0497 -1.2561 14 6 6.0542 -4.0517 0.1211 15 8 6.4282 -4.6499 -0.8654 16 7 6.0878 -4.6529 1.3268 17 6 6.5757 -6.0291 1.4458 18 1 6.2866 -6.5943 0.5598 19 6 5.9632 -6.6810 2.6879 20 6 6.7030 -7.9976 2.9559 21 8 8.0596 -7.6921 3.2825 22 6 8.7345 -6.8443 2.4624 23 6 10.1254 -6.8106 2.5404 24 9 10.7710 -7.6165 3.4117 25 6 10.8457 -5.9551 1.7297 26 6 10.1851 -5.1300 0.8377 27 6 8.8071 -5.1632 0.7570 28 6 8.0785 -6.0199 1.5668 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.6806 0.8905 31 1 3.8753 -0.6794 -0.8895 32 1 3.6587 -3.1491 -0.8920 33 1 3.6581 -3.1511 0.8880 34 1 5.7178 -2.5778 -2.0527 35 1 5.7718 -1.0803 -1.3315 36 1 5.7882 -4.1745 2.1158 37 1 6.0741 -6.0158 3.5444 38 1 4.9065 -6.8832 2.5135 39 1 6.6722 -8.6246 2.0647 40 1 6.2334 -8.5199 3.7893 41 1 11.9236 -5.9305 1.7923 42 1 10.7471 -4.4596 0.2044 43 1 8.2943 -4.5180 0.0592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424122612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:41 Heat of formation + Delta-G solvation = -123.771101 kcal Electronic energy + Delta-G solvation = -27161.050317 eV Core-core repulsion = 23119.421212 eV Total energy + Delta-G solvation = -4041.629105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.86200 -42.09141 -40.67010 -38.55526 -37.32799 -36.50747 -34.80388 -33.01819 -32.06395 -31.77354 -30.90314 -28.59416 -26.71056 -25.14406 -24.86214 -23.38570 -22.22673 -21.53588 -21.08897 -19.19700 -19.07051 -18.58112 -18.10333 -17.87027 -17.37934 -16.82083 -16.60308 -16.31132 -16.06112 -15.88786 -15.64903 -15.61147 -15.46048 -15.14515 -14.67153 -14.61246 -14.24115 -14.14072 -13.92458 -13.58906 -13.43243 -13.10042 -13.05772 -12.70151 -12.60828 -12.29224 -12.05713 -11.91425 -11.86568 -11.85891 -11.65296 -11.39574 -10.80841 -10.76022 -10.29023 -9.83002 -9.63936 -9.28485 -8.29478 -6.34860 0.01144 0.15353 1.39093 1.40428 1.51486 1.55306 1.95867 2.15809 2.36545 2.54812 3.06478 3.08767 3.42613 3.57059 3.68226 3.71840 3.76152 3.96336 4.03102 4.11112 4.17080 4.21246 4.26628 4.35190 4.44875 4.58511 4.59959 4.74442 4.79010 4.85815 4.92837 4.96755 5.04112 5.21871 5.29953 5.38092 5.45718 5.48841 5.63552 5.63647 6.07453 6.24055 6.25659 6.47316 6.50868 6.74228 7.17690 7.30236 8.87258 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.002759 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.076603 B =10146.254029 C =10797.990630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.236 1.236 7 C -0.533 4.533 8 H 0.027 0.973 9 C -0.007 4.007 10 C -0.118 4.118 11 C 0.081 3.919 12 H 0.118 0.882 13 N -0.829 5.829 14 C 0.530 3.470 15 O -0.559 6.559 16 N -0.711 5.711 17 C 0.191 3.809 18 H 0.091 0.909 19 C -0.161 4.161 20 C 0.061 3.939 21 O -0.324 6.324 22 C 0.100 3.900 23 C 0.041 3.959 24 F -0.143 7.143 25 C -0.111 4.111 26 C -0.125 4.125 27 C -0.090 4.090 28 C -0.157 4.157 29 H 0.266 0.734 30 H 0.031 0.969 31 H 0.023 0.977 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.346 0.654 35 H 0.354 0.646 36 H 0.416 0.584 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.144 0.856 41 H 0.166 0.834 42 H 0.155 0.845 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.310 -12.762 6.740 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.159 1.159 7 C -0.571 4.571 8 H 0.046 0.954 9 C -0.044 4.044 10 C -0.158 4.158 11 C -0.035 4.035 12 H 0.136 0.864 13 N -0.361 5.361 14 C 0.317 3.683 15 O -0.437 6.437 16 N -0.363 5.363 17 C 0.086 3.914 18 H 0.108 0.892 19 C -0.199 4.199 20 C -0.014 4.014 21 O -0.239 6.239 22 C 0.054 3.946 23 C 0.022 3.978 24 F -0.122 7.122 25 C -0.130 4.130 26 C -0.144 4.144 27 C -0.108 4.108 28 C -0.159 4.159 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.253 0.747 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.162 0.838 41 H 0.184 0.816 42 H 0.173 0.827 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.235 -13.373 6.522 25.929 hybrid contribution -1.670 0.928 -0.064 1.912 sum 19.566 -12.444 6.459 24.071 Atomic orbital electron populations 1.70077 1.08556 1.28208 1.52592 1.26075 0.95589 1.03764 0.94055 0.85623 0.79782 0.77835 0.79177 1.19355 1.21591 1.15909 1.21456 0.92276 0.92877 1.50535 0.95425 1.19505 0.93718 0.94007 0.97180 1.22017 0.93442 0.98605 1.01740 1.21440 0.93329 0.92261 0.96424 0.86425 1.58755 1.66419 1.07676 1.03250 1.20742 0.76144 0.88528 0.82884 1.90655 1.48563 1.66381 1.38056 1.45918 1.65749 1.14594 1.10048 1.19646 0.87798 0.83690 1.00270 0.89151 1.22526 1.02458 0.97908 0.96993 1.23312 0.77573 0.96091 1.04419 1.86041 1.28194 1.60934 1.48696 1.18736 0.89966 0.93050 0.92884 1.17433 0.87614 0.97125 0.95672 1.91461 1.81244 1.71772 1.67682 1.21292 1.01918 0.94804 0.94992 1.21201 0.93895 0.99970 0.99286 1.21465 0.94840 0.97402 0.97119 1.20186 0.97071 0.99408 0.99276 0.92566 0.95065 0.95884 0.93855 0.91512 0.84104 0.83024 0.74693 0.88845 0.86725 0.90659 0.83789 0.81638 0.82687 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.40 13.96 21.45 0.30 -58.10 16 2 C 0.00 0.10 5.47 84.65 0.46 0.56 16 3 Si 0.95 41.61 27.47 68.60 1.88 43.50 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 7 C -0.53 -29.03 9.66 25.60 0.25 -28.78 16 8 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 9 C -0.01 -0.27 3.81 29.85 0.11 -0.16 16 10 C -0.12 -3.99 4.78 30.59 0.15 -3.85 16 11 C 0.08 2.18 3.21 44.17 0.14 2.32 16 12 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 13 N -0.83 -22.79 8.93 -171.81 -1.54 -24.33 16 14 C 0.53 14.16 5.64 87.66 0.49 14.65 16 15 O -0.56 -18.19 14.18 -3.05 -0.04 -18.24 16 16 N -0.71 -14.62 4.86 -445.88 -2.17 -16.78 16 17 C 0.19 3.77 2.70 44.29 0.12 3.89 16 18 H 0.09 2.06 7.58 -2.39 -0.02 2.04 16 19 C -0.16 -2.14 5.67 30.74 0.17 -1.97 16 20 C 0.06 0.79 7.03 72.11 0.51 1.30 16 21 O -0.32 -6.79 10.09 -92.44 -0.93 -7.72 16 22 C 0.10 2.29 6.48 22.55 0.15 2.44 16 23 C 0.04 0.94 7.30 22.51 0.16 1.10 16 24 F -0.14 -3.49 17.05 44.97 0.77 -2.72 16 25 C -0.11 -2.05 10.02 22.26 0.22 -1.82 16 26 C -0.13 -2.40 10.04 22.25 0.22 -2.17 16 27 C -0.09 -2.10 9.07 22.31 0.20 -1.89 16 28 C -0.16 -3.51 5.56 -19.75 -0.11 -3.62 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 31 H 0.02 0.90 6.29 -2.38 -0.01 0.89 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.35 10.02 8.58 -89.69 -0.77 9.25 16 35 H 0.35 9.30 7.55 -89.70 -0.68 8.62 16 36 H 0.42 6.75 8.58 -92.71 -0.80 5.95 16 37 H 0.09 1.17 8.11 -2.38 -0.02 1.15 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.13 3.47 4.69 -2.92 -0.01 3.46 16 Total: -1.00 -71.30 353.56 0.31 -70.99 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -1.22 Total: 31.40 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 3.26 Total: -18.00 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -3.40 Total: -99.21 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.98 Total: -25.96 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.77 Total: -2.72 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.88 Total: 43.50 kcal Total: -71.30 0.31 -70.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.779 kcal (2) G-P(sol) polarization free energy of solvation -71.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds