Wall clock time and date at job start Tue Mar 31 2020 13:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00174 * 2 1 4 4 H 1.48495 * 109.47039 * 269.99479 * 3 2 1 5 5 H 1.48502 * 109.47109 * 29.99382 * 3 2 1 6 6 H 1.48500 * 109.47296 * 149.99367 * 3 2 1 7 7 C 1.37877 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00023 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47141 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46802 * 55.00088 * 11 10 9 13 13 N 1.46896 * 109.47123 * 295.00277 * 11 10 9 14 14 C 1.50693 * 109.47056 * 174.99778 * 11 10 9 15 15 O 1.21289 * 119.99931 * 100.00371 * 14 11 10 16 16 N 1.34776 * 120.00361 * 279.99979 * 14 11 10 17 17 C 1.46370 * 119.77129 * 359.97438 * 16 14 11 18 18 C 1.52178 * 111.20096 * 243.73512 * 17 16 14 19 19 O 1.43248 * 110.13798 * 298.82036 * 18 17 16 20 20 C 1.35568 * 115.81303 * 89.24692 * 19 18 17 21 21 C 1.38858 * 120.21532 * 108.28350 * 20 19 18 22 22 C 1.38117 * 119.90566 * 183.70440 * 21 20 19 23 23 C 1.38483 * 120.33054 * 359.16459 * 22 21 20 24 24 F 1.35095 * 120.05743 * 179.37371 * 23 22 21 25 25 C 1.38636 * 119.89135 * 359.34569 * 23 22 21 26 26 C 1.37660 * 119.67064 * 0.71274 * 25 23 22 27 27 C 1.46641 * 119.77078 * 180.02562 * 16 14 11 28 28 H 0.97000 * 119.99860 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47031 * 60.00140 * 9 7 2 30 30 H 1.08994 * 109.46869 * 299.99875 * 9 7 2 31 31 H 1.09002 * 109.47109 * 60.00164 * 10 9 7 32 32 H 1.09002 * 109.47299 * 300.00311 * 10 9 7 33 33 H 1.00902 * 110.99818 * 299.99787 * 13 11 10 34 34 H 1.00904 * 111.00406 * 63.95148 * 13 11 10 35 35 H 1.09000 * 109.13369 * 4.18186 * 17 16 14 36 36 H 1.09003 * 109.13544 * 123.29298 * 17 16 14 37 37 H 1.08999 * 109.35939 * 59.03055 * 18 17 16 38 38 H 1.08999 * 109.36208 * 178.61979 * 18 17 16 39 39 H 1.08002 * 120.04573 * 3.46366 * 21 20 19 40 40 H 1.08002 * 119.83853 * 179.44884 * 22 21 20 41 41 H 1.07996 * 120.16587 * 180.68351 * 25 23 22 42 42 H 1.08993 * 109.58629 * 339.78611 * 27 16 14 43 43 H 1.09002 * 109.69172 * 219.43843 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0009 12 1 5.9148 -2.0472 0.8429 13 7 6.0411 -2.0512 -1.2542 14 6 6.0538 -4.0520 0.1247 15 8 6.4279 -4.6511 -0.8613 16 7 6.0873 -4.6521 1.3310 17 6 5.6353 -3.9243 2.5177 18 6 6.7758 -3.7165 3.5035 19 8 7.2815 -4.9815 3.9464 20 6 8.2775 -5.5143 3.1968 21 6 9.5766 -5.5521 3.6860 22 6 10.5994 -6.0257 2.8878 23 6 10.3338 -6.4799 1.6069 24 9 11.3403 -6.9303 0.8264 25 6 9.0332 -6.4722 1.1269 26 6 8.0156 -5.9985 1.9237 27 6 6.5776 -6.0294 1.4456 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8751 -0.6805 -0.8888 31 1 3.6585 -3.1502 -0.8893 32 1 3.6578 -3.1507 0.8907 33 1 5.7176 -2.5800 -2.0503 34 1 5.7717 -1.0818 -1.3304 35 1 5.2443 -2.9533 2.2139 36 1 4.8416 -4.4916 3.0040 37 1 7.5757 -3.1575 3.0180 38 1 6.4128 -3.1519 4.3623 39 1 9.7874 -5.2079 4.6878 40 1 11.6108 -6.0463 3.2662 41 1 8.8195 -6.8357 0.1326 42 1 6.5270 -6.5175 0.4724 43 1 5.9664 -6.5784 2.1619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424165336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:13 Heat of formation + Delta-G solvation = -87.190187 kcal Electronic energy + Delta-G solvation = -27565.493410 eV Core-core repulsion = 23525.450572 eV Total energy + Delta-G solvation = -4040.042838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.12842 -41.10048 -39.55215 -37.64096 -35.91662 -35.60589 -32.92537 -32.43360 -30.84472 -30.40281 -28.76757 -27.84400 -26.08643 -24.14972 -23.49459 -22.47338 -21.74691 -20.41287 -19.28948 -18.33702 -17.77877 -17.48311 -17.01062 -16.72603 -16.24485 -15.88538 -15.52362 -15.38130 -14.72414 -14.61172 -14.43861 -14.36413 -14.24667 -13.89989 -13.67389 -13.45840 -13.19949 -13.04506 -12.72866 -12.66375 -12.16122 -12.00319 -11.84216 -11.74274 -11.43999 -11.35173 -11.05303 -10.51361 -10.40193 -10.16827 -9.93428 -9.59824 -9.37871 -9.31725 -8.90454 -8.68721 -8.67607 -8.40505 -6.16855 -4.16978 0.63288 0.82083 2.66056 2.71808 3.04826 3.20639 3.29006 3.29475 3.59183 3.91121 4.28094 4.32408 4.37566 4.50769 4.68020 4.74441 4.80593 4.86705 4.95335 5.00539 5.13023 5.15644 5.20128 5.28613 5.42912 5.46483 5.47979 5.51705 5.62796 5.77045 5.81152 6.02839 6.05651 6.21705 6.31939 6.33329 6.56038 7.00348 7.08812 7.13014 7.16385 7.38498 7.60011 7.69669 8.20371 8.38735 8.86984 9.44071 10.96297 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.003017 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.913132 B = 9278.626069 C = 9715.606087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.132 4.132 11 C 0.070 3.930 12 H 0.097 0.903 13 N -0.830 5.830 14 C 0.529 3.471 15 O -0.529 6.529 16 N -0.612 5.612 17 C 0.069 3.931 18 C 0.048 3.952 19 O -0.322 6.322 20 C 0.098 3.902 21 C -0.107 4.107 22 C -0.138 4.138 23 C 0.089 3.911 24 F -0.138 7.138 25 C -0.116 4.116 26 C -0.104 4.104 27 C 0.156 3.844 28 H 0.264 0.736 29 H 0.018 0.982 30 H 0.012 0.988 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.349 0.651 34 H 0.351 0.649 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.101 0.899 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.856 -10.518 8.858 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.172 4.172 11 C -0.045 4.045 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.317 3.683 15 O -0.403 6.403 16 N -0.346 5.346 17 C -0.055 4.055 18 C -0.028 4.028 19 O -0.238 6.238 20 C 0.053 3.947 21 C -0.126 4.126 22 C -0.157 4.157 23 C 0.069 3.931 24 F -0.116 7.116 25 C -0.135 4.135 26 C -0.106 4.106 27 C 0.033 3.967 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.030 0.970 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.120 0.880 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.551 -10.957 8.717 24.048 hybrid contribution -0.486 1.089 -0.405 1.259 sum 19.066 -9.868 8.312 23.021 Atomic orbital electron populations 1.69905 1.06350 1.27072 1.50447 1.25040 0.94748 0.99217 0.94376 0.86778 0.80272 0.83581 0.78619 1.20209 1.21288 1.18996 1.21044 0.89128 0.94554 1.51571 0.91031 1.19571 0.97657 0.91163 0.96315 1.22268 0.91006 1.01296 1.02624 1.21564 0.95859 0.91530 0.95506 0.88565 1.58741 1.66725 1.07470 1.03319 1.20912 0.76462 0.88787 0.82121 1.90639 1.47180 1.65872 1.36629 1.47835 1.65252 1.14005 1.07524 1.22236 0.97177 0.99782 0.86257 1.23272 0.96609 0.83634 0.99246 1.86137 1.50746 1.36008 1.50919 1.18567 0.87888 0.97986 0.90226 1.21105 0.90326 1.00342 1.00812 1.21002 1.00647 1.01295 0.92770 1.17708 0.84891 1.00606 0.89860 1.91508 1.59166 1.86796 1.74166 1.20890 0.90395 1.01288 1.00973 1.20644 0.96927 0.99353 0.93693 1.20506 0.89017 0.83841 1.03339 0.92569 0.96395 0.97018 0.91869 0.91670 0.83744 0.83396 0.87058 0.89490 0.91686 0.86685 0.84192 0.84262 0.83912 0.88036 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.96 55.43 0.77 -25.98 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 20.46 27.47 -169.99 -4.67 15.79 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 7 C -0.53 -14.05 9.66 -34.44 -0.33 -14.39 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C -0.01 -0.20 3.81 -27.88 -0.11 -0.31 16 10 C -0.13 -2.34 4.44 -26.73 -0.12 -2.46 16 11 C 0.07 1.07 2.34 -68.87 -0.16 0.91 16 12 H 0.10 1.33 6.69 -51.93 -0.35 0.98 16 13 N -0.83 -12.90 8.94 -5.66 -0.05 -12.95 16 14 C 0.53 8.18 6.92 -10.99 -0.08 8.10 16 15 O -0.53 -9.64 15.68 5.55 0.09 -9.55 16 16 N -0.61 -7.70 2.69 -175.04 -0.47 -8.17 16 17 C 0.07 0.71 5.53 -4.53 -0.03 0.68 16 18 C 0.05 0.42 6.68 36.74 0.25 0.67 16 19 O -0.32 -3.34 9.90 -18.40 -0.18 -3.52 16 20 C 0.10 1.04 5.61 -39.18 -0.22 0.82 16 21 C -0.11 -0.97 10.00 -39.40 -0.39 -1.36 16 22 C -0.14 -1.24 10.00 -39.54 -0.40 -1.64 16 23 C 0.09 0.95 7.31 -39.34 -0.29 0.67 16 24 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 25 C -0.12 -1.30 9.69 -39.65 -0.38 -1.69 16 26 C -0.10 -1.18 5.49 -104.23 -0.57 -1.75 16 27 C 0.16 1.79 5.66 -4.69 -0.03 1.76 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 30 H 0.01 0.24 6.29 -51.93 -0.33 -0.08 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.11 6.98 -51.93 -0.36 0.75 16 33 H 0.35 5.55 8.58 -39.29 -0.34 5.22 16 34 H 0.35 5.23 7.55 -39.29 -0.30 4.93 16 35 H 0.11 1.17 4.67 -51.93 -0.24 0.93 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 38 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.14 1.55 8.00 -52.49 -0.42 1.13 16 42 H 0.10 1.24 6.96 -51.93 -0.36 0.88 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -32.05 351.05 -7.74 -39.78 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.60 Total: 9.03 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.95 Total: -8.19 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.25 Total: -47.11 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.10 Total: -13.07 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.05 -7.74 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424165336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.406 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds